KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:14 2014 Check: 00 .. Name: ENSP00000378130/1-583 Len: 809 Check: 2035 Weight: 1.00 Name: ENSTTRP00000015466/1-579 Len: 809 Check: 7892 Weight: 1.00 Name: ENSBTAP00000045833/1-618 Len: 809 Check: 2583 Weight: 1.00 Name: bmy_07170T0/1-676 Len: 809 Check: 5662 Weight: 1.00 Name: BACU014408/1-577 Len: 809 Check: 8550 Weight: 1.00 // 1 50 ENSP00000378130/1-583 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015466/1-579 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045833/1-618 ---------- ---------- ---------- ---------- ---------- bmy_07170T0/1-676 TRLLVKLTNN TNPQPPSPDP TPPSPPGGPS FEAYLQTTCS GGPWSWPLLK BACU014408/1-577 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000378130/1-583 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015466/1-579 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045833/1-618 ---------- ---------- ---------- ---------- ---------- bmy_07170T0/1-676 PPRPPPRPNP PLPPPLKLPP PPPRKWWLLL PPPRPKPPPR LKPPRPLPRK BACU014408/1-577 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000378130/1-583 ---------- ---------- ---------- ---------- ----MKLLHV ENSTTRP00000015466/1-579 ---------- ---------- ---------- ---------- ----MKPAHA ENSBTAP00000045833/1-618 ---------- ---------- ---------- ---------- ----MKLGHV bmy_07170T0/1-676 DMLAPTLKQN EALFSIKRLK IKFQKNIWGA EESTVEIQTL IVSNMKLAHA BACU014408/1-577 ---------- ---------- ---------- ---------- ----MK-GSV 151 200 ENSP00000378130/1-583 FLLFLCFHLR FCK------- ---------- ---------- ---------- ENSTTRP00000015466/1-579 VLLLLCFCLS FCE------- ---------- ---------- ---------- ENSBTAP00000045833/1-618 ILLLLCFYLS FCEDNFRKRG KSKAVKKSEA HHAPEASLSK ETEASSEVKP bmy_07170T0/1-676 VLLLLCFCLS FCE------- ---------- ---------- ---------S BACU014408/1-577 L--------- ---------- ---------- ---------- ---------S 201 250 ENSP00000378130/1-583 --VTYTSQED LVEKKCLAKK YTHLSCDKVF CQPWQRCIEG TCVCKLPYQC ENSTTRP00000015466/1-579 --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000045833/1-618 TSTQDTSQKD FVDKKCLTEK HTHLSCNKVF CQPWQKCIDG TCLCKLPYQC bmy_07170T0/1-676 TSTSDTFQED LVEKKCLTEK YTCLSCNKVF CQPWQKCIDG TCICKLPYQC BACU014408/1-577 TSTSDTFQED LVEKKCLTEK YTCLSCNKVF CQPWQKCIDG TCICKLPYQC 251 300 ENSP00000378130/1-583 PKNGTAVCAT NRRSFPTYCQ QKSLECLHPG TKFLNNGTCT AEGKFSVSLK ENSTTRP00000015466/1-579 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXEFSVSLE ENSBTAP00000045833/1-618 PKNGTRVCST NGKSYSTYCQ QKSFECYRPE AKFLKSGACT GGGQFSVSLS bmy_07170T0/1-676 PKNGTRVCSV NGKSYPTYCQ QKSFECLRPE AKFLKTGACT GEEQFSVSLE BACU014408/1-577 PKNGTRVCSV NGKSYPTYCQ QKSFECLRPE AKFLKTGACT GEEQFSVSLE 301 350 ENSP00000378130/1-583 HGNTDSEGIV EVKLVDQDKT MFICKSSWSM REANVACLDL GFQQGA-DTQ ENSTTRP00000015466/1-579 SEKGHSEGIV EVKLVDQDQK MFVCGKSWSI TQANVACLDL GFPLGALDTQ ENSBTAP00000045833/1-618 NGKQDSEGIV AVKLADLDTK MFVCGDSWSI TEANVACIDR GFQLGALDTH bmy_07170T0/1-676 NEKGHSEGIV EVKLVDQDKK MFVCGKSWSI TQANVACLDL GFQLGALDTQ BACU014408/1-577 NEKGHSEGIV EVKLIDQDKK MFVCGKSWSI TQANVACLDL GFQLGALDTQ 351 400 ENSP00000378130/1-583 RRFKLSDLSI NSTECLHVHC RGLETSLAEC TFTKRRTMGY QDFADVVCYT ENSTTRP00000015466/1-579 SR----DRHI NSTECLHVHC RGFETTLAEC TFTKGLTSSS KGLAGVVCYT ENSBTAP00000045833/1-618 RR----DPDP NSAECLHVRC RGLETSLAEC TFTKGV-HNS EGLAGVVCYT bmy_07170T0/1-676 RR----DPDT NSTECLHVHC RGFETSLAEC TFTKGLTSSS EGLAGVVCYT BACU014408/1-577 RR----DPHT NSTECLHVHC RGFETSLAEC TFTKGLTSSS EGLAGVVCYT 401 450 ENSP00000378130/1-583 QKADSPMDDF FQCVNGKYIS QMKACDGIND CGDQSDELCC KACQGKGFHC ENSTTRP00000015466/1-579 GSEVSPTNNS FQCVNGKHIP QKKACDGVND CGDQSDELCC KECRGESFFC ENSBTAP00000045833/1-618 ESAAPPKKDS FQCVNGKRIP QKKACDGVND CVDKSDELCC KDCRGEGFLC bmy_07170T0/1-676 GSAVSPTNDS FLCVNGKPIP QKKACDGVND CGDQSDELCC KECRGESFFC BACU014408/1-577 GSAVSPTNDS FPCVNGKLIP QEKACDGIND CGDQSDELCC KECRGESFFC 451 500 ENSP00000378130/1-583 KSGVCIPSQY QCNGEVDCIT GEDEVGCAGF --------AS VTQEETEILT ENSTTRP00000015466/1-579 KSGVCIPKQY KCNGEVDCIT GEDEIGCEGD --------LR MAQEETEMLT ENSBTAP00000045833/1-618 KSGVCIPKQY KCNGELDCIT GEDEVGCEET GHPEIK---- ---EAAEMLT bmy_07170T0/1-676 KSGVCIPKQY KCNGEVDCIT GEDEIGCE-- ---------- ---EETEMLT BACU014408/1-577 KSGVCIPKQY KCNGEVDCIT GEDEIDCEGT GHPEIKGALR TAQEETEMLT 501 550 ENSP00000378130/1-583 ADMDAERRRI KSLLPKLSCG VKNRMHIRRK RIVGGKRAQL GDLPWQVAIK ENSTTRP00000015466/1-579 ADMDAERKWI KSFFPKLSCG VKNSMHIRRK RVIGGKSAKV GDLPWQVAIK ENSBTAP00000045833/1-618 ADMDAERKFT KSFLPKLSCG VKNNMHIRRK RVVGGKPAKM GEFPWQMAIK bmy_07170T0/1-676 ADMDAERKWI KSFFPKLSCG VKNSAHIRRK RVVGGKPAKV GDFPWQVAIK BACU014408/1-577 ADMDAERRRI KSFFPKLSCG VKNSTHIRRK RVIGGKPAKV GDFPWQVAIK 551 600 ENSP00000378130/1-583 DASGITCGGI YIGGCWILTA AHCLRASKTH RYQIWTTVVD WIHPDLKRIV ENSTTRP00000015466/1-579 EGEKINCGGI YIGGCWILTA AHCVRISRIH RYQIWTSFTD LLRPDSQ-IA ENSBTAP00000045833/1-618 EGDKIHCGGI YIGGCWILTA AHCVRISRMH RYQIWTSFTD WLRPGFQ-TV bmy_07170T0/1-676 EDEKINCGGI YIGGCWILTA AHCVR----- KYI------- ---------- BACU014408/1-577 EDEKINCGGI YIGGCWILTA AHCVRISKIR RYQIWTSFTD LIKPDSQ-IA 601 650 ENSP00000378130/1-583 IEYVDRIIFH ENYNAGTYQN DIALIEMKKD GNKKDCELPR SIPACVPWSP ENSTTRP00000015466/1-579 VQLVNQIIIH DKYNGATYQN DIALIEMKKH PRRKECVLPH SVPACVPWSP ENSBTAP00000045833/1-618 VHSVNRIIIH ENYNGTTYQN DIALIEMKKR PNEKECVLSK SIPACVPWSP bmy_07170T0/1-676 ---------- ---------- ---------- ---------- ---------- BACU014408/1-577 VQLVNQIIIH DKYNGATYQN DIALIEMKKH PSRKECVLPH SVPACVPWSP 651 700 ENSP00000378130/1-583 YLFQPNDTCI VSGWGREKDN ERVFSLQWGE VKLISNCSKF YGNRFYEKEM ENSTTRP00000015466/1-579 YLFQPNDKCI VSGWGREKDN QKVYSLKWGE VHLIANCSKF YPDRYFEKEM ENSBTAP00000045833/1-618 YLFQPNDKCI VSGWGREKDN QKVYSLRWGE VHLINNCSEF YPGRYFEKEM bmy_07170T0/1-676 FLYVPN---- --GLLNYENN QKVYSLKWGE VHLIANCSKF YPGRYFEKEM BACU014408/1-577 YLFQPNDKCI VSGWGREKDN QKVYSLKWGE VHLIANCSKF YPGRYFEKEM 701 750 ENSP00000378130/1-583 ECAGTYDGSI DACKGDSGGP LVCMDANNVT YVWGVVSWGE NCGKPEFPGV ENSTTRP00000015466/1-579 ECAGTDDGSI DACKGDSGGP LVCKDANNVT YVWGVVSWGE NCGNSEFPGV ENSBTAP00000045833/1-618 QCAGTDDGSI DACKGDSGGP LVCQDVNNVT YVWGVVSWGE NCGKSEFPGV bmy_07170T0/1-676 ECAGTDDGSI DACKGDSGGP LVCKDANNVT YVWGVVSWGE NCGNSEFPGV BACU014408/1-577 ECAGTDDGSI DACKGDSGGP LVCKDANDVT YVWGVVSWGE NCGNSEFPGV 751 800 ENSP00000378130/1-583 YTKVANYFDW ISYHVGRPFI SQYNV----- ---------- ---------- ENSTTRP00000015466/1-579 YTKVANYFDW ISLHVGRSRI SQHNV----- ---------- ---------- ENSBTAP00000045833/1-618 YTKVANYFDW ISQHVGRSLI SQHNI----- ---------- ---------- bmy_07170T0/1-676 YTKVANYFDW IGLHVGRSRI SQHNGSTKFM PFWNSVQFSN KYSSQAYIFY BACU014408/1-577 YTKVVNYFDW ISLHVGRSRI SQHNV----- ---------- ---------- 801 850 ENSP00000378130/1-583 --------- ENSTTRP00000015466/1-579 --------- ENSBTAP00000045833/1-618 --------- bmy_07170T0/1-676 LLENAEAGT BACU014408/1-577 ---------