KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:16 2014 Check: 00 .. Name: ENSP00000362171/1-506 Len: 508 Check: 6716 Weight: 1.00 Name: ENSBTAP00000045918/1-285 Len: 508 Check: 1109 Weight: 1.00 Name: ENSTTRP00000003358/1-482 Len: 508 Check: 1680 Weight: 1.00 Name: bmy_18165T0/1-460 Len: 508 Check: 8949 Weight: 1.00 Name: BACU010867/1-480 Len: 508 Check: 6473 Weight: 1.00 // 1 50 ENSP00000362171/1-506 MAEADFKMVS EPVAHGVAEE EMASSTSDSG EESDSSSSSS STSDSSSSSS ENSBTAP00000045918/1-285 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003358/1-482 MAEADPNRVL EPAAQGVDEE MVASSSSDSG EESDSSSSSS STSCSSSS-- bmy_18165T0/1-460 ---------- ---------- MVASSSSDSG EESDSSSSSS STSCSSSS-- BACU010867/1-480 MAEADPNRVL EPAAQGVDEE MVASSSSDSG EESDSSSSSS STSCSSSS-- 51 100 ENSP00000362171/1-506 TSGSSSGSGS SSSSSGSTSS RSRLYRKKRV PEPSRRARRA PLGTNFVDRL ENSBTAP00000045918/1-285 ---------- ---------- ---------- ---------- ----SFVDQL ENSTTRP00000003358/1-482 ---------S SSGSSSSSSS CSRFYRKKRV PGPSRSARRA PSGRSFVDQL bmy_18165T0/1-460 ---------S SSGSSSSSSS CSHFYRKKRV PGPSRSARRA PSGRSFVDQL BACU010867/1-480 ---------S SSGSSSSSSS CSRFYRKKRG PGPSRSARRA PSGRSFVDQL 101 150 ENSP00000362171/1-506 PQAVRNRVQA LRNIQDECDK VDTLFLKAIH DLERKYAELN KPLYDRRFQI ENSBTAP00000045918/1-285 PRAVRNRVQA LRNIQDECDK VDALFLEAIH DLERKYAELN RPLYNRRFQI ENSTTRP00000003358/1-482 PRAVRNRVQA LRNIQDECDK VDALFLKAIH DLERKYAELN RPLYDRRFRI bmy_18165T0/1-460 PRAVRNRVQA LRNIQDECDK VDALFLKAIH DLERKYAELN RPLYDRRFRI BACU010867/1-480 PRAVRNRVQA LRNIQDECDK VDALFLKAIH DLERKYAELN RPLYDRRFRI 151 200 ENSP00000362171/1-506 INAEYEPTEE ECEWNSEDEE FSSDEEVQDN TPSEMPPLEG EEEENPKENP ENSBTAP00000045918/1-285 INAEYEPTEE ECEWNLED-- ---------- --------EG EEEEDD---- ENSTTRP00000003358/1-482 INAEYEPTEE ECEWNSEDEV FSSDEEVQEE GPSEMPALEG EEEEDD---- bmy_18165T0/1-460 INAEYEPTEE ECEWNSEDEV FSSDEEVQEE GPSEMPALEG EEEEDA---- BACU010867/1-480 INAEYEPTEE ECEWNSEDEV FSSDEEVQEE GPSEMPALEG EEEEDA---- 201 250 ENSP00000362171/1-506 EVKAEEKEVP KEIPEVKDEE KEVPKEIPEV KAEEKADSKD CMEATPEVKE ENSBTAP00000045918/1-285 ---------- ---------- ---------- ---------- -LEAKL---- ENSTTRP00000003358/1-482 ---------P KTKPEVKAEE NAAPKENPEA KAEEEEESKD ALEAKTEVKE bmy_18165T0/1-460 ---------P KAKPEVKAEE NAAPKENSEA KAEEKAESKD ALEAKTEAKE BACU010867/1-480 ---------P KAKPEVKAEE NAAPKKNPEA KAEEKAESKD ALEAKTEAKE 251 300 ENSP00000362171/1-506 DPKEVPQVKA DDKEQPKATE AKARAAVRET HKRVPEERLQ DSVDLKRARK ENSBTAP00000045918/1-285 ---------- --RSRTKAAE AKTRTPGKEA PKRVPEVTPK ---------- ENSTTRP00000003358/1-482 DPKESPQAKA EDKEQPKVTE AKARAPGKEA PKRVPEVRPK ERA-LKRARK bmy_18165T0/1-460 DPKESPQAKA EGKEQPKVTE AKARAPGKEA PKRVPEVRPK ERA-LKRARK BACU010867/1-480 DPKESPQAKA EGKEQPQVTE AKARAPGKEA PKRVPEVRPK ERA-LKRARK 301 350 ENSP00000362171/1-506 GKPKREDPKG IPDYWLIVLK NVDKLGPMIQ KYDEPILKFL SDVSLKFSKP ENSBTAP00000045918/1-285 ---------- ------TVFK NVDKLGPMIQ KYDEPILNFL SDVSLTFSKP ENSTTRP00000003358/1-482 GKPKREDPKG IPDYWLTVLK NVDKLGPMIQ KYDEPILKFL SDVSLKFSKP bmy_18165T0/1-460 GKPKREDPKG IPDYWLTVLK NVDKLGPMIQ KYDEPILKFL SDVSLKFSKP BACU010867/1-480 GKPKREDPKG IPDYWLTVLK NVDKLGPMIQ KYDEPILKFL SDLSLKFSKP 351 400 ENSP00000362171/1-506 GQPVSYTFEF HFLPNPYFRN EVLVKTYIIK AKPDHNDPFF SWGWEIEDCK ENSBTAP00000045918/1-285 SRPVSYTFEF CFLPNPYFKT EVLTKRYIIK SKPDSNDPFF SWGWEIQDGK ENSTTRP00000003358/1-482 GRPISYTFEF CFLPNPYFKN EVLTKTYIIK SKPDHNDPFF SWGWEIQDCK bmy_18165T0/1-460 GRPISYTFEF CFLPNPYFKN EVLTKTYIIK SKPDHNDPFF SWGWEIQDCK BACU010867/1-480 GRPISYTFEF CFLPNPYFKN EVLTKTYIIK SKPDHNDPFF SWGWEIQDCK 401 450 ENSP00000362171/1-506 GCKIDWRRGK DVTVTTTQSR TTATGEIEIQ PRVVPNASFF NFFSPPEIPM ENSBTAP00000045918/1-285 GCKIDWRRGK DVTVTTTQSH TAATGQVETQ PRVVPNAEFF NIFSRPEIPT ENSTTRP00000003358/1-482 GCKIDWRRAK DVTVTTTRSR TTATGEVETQ PRVVPNASFF NFFSPPEIPT bmy_18165T0/1-460 GCKIDWRRAK DVTVTTTRSR TTATGEVETQ PRVVPNASFF NFFSPPEIPT BACU010867/1-480 GCKIDWRRAK DVTVTTTRSR TTATGEVETQ PRVVPNASFF NFFSPPEIPT 451 500 ENSP00000362171/1-506 IGKLEPREDA ILDEDFEIGQ ILHDNVILKS IYYYTGEVNG TYYQFGKHYG ENSBTAP00000045918/1-285 IGKLEPREDA ILDEDFEIGK TLHDNVILKS IYYYTG---- ---------- ENSTTRP00000003358/1-482 IGKLEPREDA ILDEDFEIGQ ILHDNVILKS IYYYTGEVNG T-YDVGKDCR bmy_18165T0/1-460 IGKLEPREDA ILDEDFEIGQ ILHDNVILKS IYYYTGEVNG T-YHVGKDYG BACU010867/1-480 IGKLEPREDA ILDEDFEIGQ ILHDNVILKS IYYYTGEVNG T-YHVGKDYG 501 550 ENSP00000362171/1-506 NKKYRK-- ENSBTAP00000045918/1-285 -------- ENSTTRP00000003358/1-482 NRKYRKKK bmy_18165T0/1-460 NRKYRK-- BACU010867/1-480 NRKYRK--