KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:20 2014 Check: 00 .. Name: ENSP00000409906/1-1073 Len: 1112 Check: 1941 Weight: 1.00 Name: ENSBTAP00000045997/1-1112 Len: 1112 Check: 5236 Weight: 1.00 Name: ENSTTRP00000002725/1-1005 Len: 1112 Check: 5228 Weight: 1.00 Name: bmy_07323T0/1-742 Len: 1112 Check: 7677 Weight: 1.00 Name: BACU004221/1-1112 Len: 1112 Check: 3097 Weight: 1.00 // 1 50 ENSP00000409906/1-1073 MAWVKFLRKP GGNLGKVYQP GSMLSLAPTK GLLNEPGQNS CFLNSAVQVL ENSBTAP00000045997/1-1112 MAWVKFLRKP GGNLGKTYQP GSMLSLAPTK GLLNEPGQNS CFLNSAVQVL ENSTTRP00000002725/1-1005 MAWN---LKP G---NESYQP GSMLSLA-TK G-LNEPGQNS C-LNSAVQVL bmy_07323T0/1-742 MAWVKFLRKP GGNLGKAYQP GSMLSLAPTK GLLNEPGQNS CFLNSAVQVL BACU004221/1-1112 MAWVKFLRKP GGNLGKTYQP GSMLSLAPTK GLLNEPGQNS CFLNSAVQVL 51 100 ENSP00000409906/1-1073 WQLDIFRRSL RVLTGHVCQG DACIFCALKT IFAQFQHSRE KALPSDNIRH ENSBTAP00000045997/1-1112 WQLDIFRRSL RVLTGHVCQG DACIFCALKT IFAQFQHSQE KALPSDNIRH ENSTTRP00000002725/1-1005 WQLDIFRRSL RVLDGHVCQG VACIFCALKT IFAQFQHSRE KALPSDNIRH bmy_07323T0/1-742 WQLDIFRRSL RVLTGHVCQG DACIFCALKK IFAQFQHSRE KALPSDNIRH BACU004221/1-1112 WHLDIFRRSL RVLNGHVCPR DACIFCALKT IFQQFQHSRE KALPSDNIRH 101 150 ENSP00000409906/1-1073 ALAESFKDEQ RFQLGLMDDA AECFENMLER IHFHIVPSRD ADMCTSKSCI ENSBTAP00000045997/1-1112 ALAESFRDEQ RFQLGLMDDA AECFENILER IHFHIVPSRD ADMCTSKSCI ENSTTRP00000002725/1-1005 ALAESFKDEQ RFQLGLMDDA AECFENILER IHFHIVPSRD ADMCTSKSCI bmy_07323T0/1-742 ALAESFKDEQ RFQLGLMDDA AECFENILER IHFHIVPSRD ADMCTSKSCI BACU004221/1-1112 ALAESFKDEQ RFQLGLMDDA AECFENILER IHFHIVPSRD ADMCTSKSCI 151 200 ENSP00000409906/1-1073 THQKFAMTLY EQCVCRSCGA SSDPLPFTEF VRYISTTALC NEVERMLERH ENSBTAP00000045997/1-1112 THQKFAMTLY EQCVCRSCGA SSDPLPFTEF VRYISTTALC NEVERMMERH ENSTTRP00000002725/1-1005 THQKFAMTLY EQCVCRSCGA SSDPLPFTEF VRYISTTALC NEVERMMERH bmy_07323T0/1-742 THQKFAMTLY EQCVCRSCGA SSDPLPFTEF VR-------- NEVERMMERH BACU004221/1-1112 THQKFAMTLY EQCVCRSCGA SSDPLPFTEF VRYISTTALC NEVERMMERH 201 250 ENSP00000409906/1-1073 ERFKPEMFAE LLQAANTTDD YRKCPSNCGQ KIKIRRVLMN CPEIVTIGLV ENSBTAP00000045997/1-1112 ERFKPDMFAE LLQAANTTDD YRKCPSNCGQ KIKIRRVLMN CPEIVTIGLV ENSTTRP00000002725/1-1005 ERSKPEMFAE LLQAANTTDD YRKCPSNCGQ KIKIRRVLMN CPEIVTIGLV bmy_07323T0/1-742 ERSKPEMFAE LLQAANTTDD YRKCPSNCGQ KIKIRRVLMN CPEIVTIGLV BACU004221/1-1112 ERSKPEMFAE LLQAANTTDD YRKCPSNCGQ KIKIRRVLMN CPEIVTIGLV 251 300 ENSP00000409906/1-1073 WDSEHSDLTE AVVRNLATHL YLPGLFYRVT DENAKNSELN LVGMICYTSQ ENSBTAP00000045997/1-1112 WDSEHSDLTE DVVRNLATQL YLPGLFYRVT DENAKNSELH LVGMICYTSR ENSTTRP00000002725/1-1005 WDSEHSDLTE DVVRNLATHL YLPGLFYRVT DENAKNSELH LVGMICYTSR bmy_07323T0/1-742 WDSEHSDLTE DVVRNLATHL YLPGLFYRVT DENAKNSELH LVGMICYTSR BACU004221/1-1112 WDSEHSDLTE DVVRNLATHL YLPGLFYRVT DENAKNSELH LVGMICYTSR 301 350 ENSP00000409906/1-1073 HYCAFAFHTK SSKWVFFDDA NVKEIGTRWK DVVSKCIRCH FQPLLLFYAN ENSBTAP00000045997/1-1112 HYCAFAFHTK SSKWVFFDDA NVKEVGSRWK DVVSKCIRCH FQPLLLFYAN ENSTTRP00000002725/1-1005 HYCAFAFHTK SSKWVFFDDA NVKEVGTRWK DVVSKCIRCH FQPLLLFYAN bmy_07323T0/1-742 HYCAFAFHTK SSKWVFFDDA NVKEVGTRWK DVVSKCIRCH FQPLLLFYAN BACU004221/1-1112 HYCAFAFHTK SSKWVFFDDA NVKEVGTRWK DVVSKCIRCH FQPLLLFYAN 351 400 ENSP00000409906/1-1073 PDGTAVSTED ALRQVISWSH YKSVAENMGC EKPVIHKSDN LKENGFGDQA ENSBTAP00000045997/1-1112 PDGTAVSTED ALRQVINWSH HKSIAENIGC EKPSISKSEN SKENGFGDQT ENSTTRP00000002725/1-1005 PDGTAVSTED ALRQVINWSP HKSVAENIGC EKSSIHKSEN SKENGFGDQT bmy_07323T0/1-742 PDGTAVSTED ALKQVINWSH HKSVAENIGC EKPSIHKSEN SKENEFGDQT BACU004221/1-1112 PDGTAVSTED ALKQIINWSH HKSVAENIGC EKPSIHKSEN SKENGFGDQT 401 450 ENSP00000409906/1-1073 KQRENQKFPT DNISSSNRSH SHTGVGKGPA KLSHIDQREK IKDISRECAL ENSBTAP00000045997/1-1112 KQRENQKFQA DSISSFNRSH IQTSGGRGPV KSGHNDQREK IKDISRECAL ENSTTRP00000002725/1-1005 KQRENQKFQA DSISSFSQSH IQTSGSRGTV KSSHNDQREK IKDISRECAL bmy_07323T0/1-742 KQRENQKFQA DSISSFNRSH IQTSGSRGTV KSSHNDQREK IKDISRECAL BACU004221/1-1112 KQRENQKFQA DSISSFNRSH IQTSGSRGTV KSSHNDQREK IKDISRECAL 451 500 ENSP00000409906/1-1073 KAIEQKNLLS SQRKDLEKGQ RKDLGRHRDL VDEDLSHFQS GSPPAPNGFK ENSBTAP00000045997/1-1112 KAIEQKNLLS SQRKDLERGQ RKDLGRHRDL VDEDPPHFKT GSPPTLNGFR ENSTTRP00000002725/1-1005 KAIEQKNLLS SQRKDLERGQ RKDLGRHRDL VNEDLPHFKS GSPPAPNGFR bmy_07323T0/1-742 KAIEQKNLLS SQRKDLERGQ RKDLGRHRDL VDEDLPHFKS GSPPAPNGFR BACU004221/1-1112 KAIEQKNLLS SQRKDLERGQ RKDLGRDKDL VDEDLPHFKS GSPPAPNGFR 501 550 ENSP00000409906/1-1073 QHGNPHLYHS QGKGSYKHDR VVPQSRASAQ IISSSKSQIL APGEKITGKV ENSBTAP00000045997/1-1112 QYGNSHLYHS QGKGPCKHDR NAHQNRTSAQ TLSSSKSQIL ALGEKITGKI ENSTTRP00000002725/1-1005 QYGNPHLYHS QGKGPCKHDR IAHQSRASAQ TLSSSKSQIL ASGEKITGKF bmy_07323T0/1-742 QYGNPHLYHS QGKGPCKHDR IAHQNRASAQ TLSSSKSQIL ASGEKITGKF BACU004221/1-1112 QYGNPHLYPS QGKGPCKHDR IAHQSRASAQ TLSSSKSQIL ASGEKITGKF 551 600 ENSP00000409906/1-1073 KSDNGTGYDT DSSQDSRDRG NSCDSSSKSR NRGWKPMRET LNVDSIFSES ENSBTAP00000045997/1-1112 KSDSGTGYDT DSSQDSRDKG SSSNGSNKSR NRGWKPMRET LNVDSIFNES ENSTTRP00000002725/1-1005 KSDSGTGYDT DSSQDSRDKG SSCNGSTKSR NRGWKPMRET LNVDSIFNES bmy_07323T0/1-742 KSDSGTGYET DSSQDSRDKG SSCNGSTKSR NRGWKPMRET LNVDSIFNES BACU004221/1-1112 KSDSGTGYDT DSSQDSRDKG SSCNGSTKSR NRGWKPMRET LNVDSIFNES 601 650 ENSP00000409906/1-1073 EKRQHSPRHK PNISNKPKSS KDPSFSNWPK ENPKQKGLMT IYEDEMKQEI ENSBTAP00000045997/1-1112 EKRQQSPRHK SNISNKSKCS KDQSFNDWPK ENPKQKCLMT IYEDEMKQET ENSTTRP00000002725/1-1005 EKRQHSPRHK SNISNKSKCS KDQSFNSCPK ENPKQKCLMT IYEDEMKQET bmy_07323T0/1-742 EKRQHSPRHK SNISNKSKCS KDQSFNSCPK ENPKQKCLMT IYEDEMKQET BACU004221/1-1112 EKRQHSPRHK SNISNKSKYS KDQSFNSCPK ENPKQKCLMT IYEDEMKQET 651 700 ENSP00000409906/1-1073 GSRSSLESNG KGAEKNKGLV EGKVHGDNWQ MQRTESGYES SDHISNGSTN ENSBTAP00000045997/1-1112 GSRSSLEFNG KVAEKNKALK ETKVHGDNWQ MQRTESGYES SDHISNGSAN ENSTTRP00000002725/1-1005 GSRSSLEFNG KGAEKNKALK ETKVHGDNWQ MQRTESGYES SDHISNGSAN bmy_07323T0/1-742 GSRSSLEFNG KGAEKNKALK ETKVHGDNWQ MQRTESGYES SDHISNGSAN BACU004221/1-1112 GSRSSLEFNG KGAEKNKALK ETKVHGDNWQ MQRTESGYES SDHISNGSAN 701 750 ENSP00000409906/1-1073 LDSPVIDGNG TVMDISGVKE TVCFSDQITT SNLNKERGDC TSLQSQHHLE ENSBTAP00000045997/1-1112 LDSPIIDGNG TLVDISGDKE TTSFSDQIKT SNLNTERVNY TSQQSKNNLE ENSTTRP00000002725/1-1005 LESPVIDGNG AVMDISGVKE TASFSNQIKT SNLNIDRMNC TSQQSKNYLE bmy_07323T0/1-742 LDSPVIDGNG TVMDISGVKE TASFSNQIKT SNLNIDRMNY TSQQSKNCLE BACU004221/1-1112 LDSPVIDGNG TVMDISGVKE TASFSNQIKT SNLNIDRMNY TSQQSKNCLE 751 800 ENSP00000409906/1-1073 GFRKELRNLE AGYKSHEFHP ESHLQIKNHL IKRSHVHEDN GKLFPSSSLQ ENSBTAP00000045997/1-1112 GFKRELKNLD VASKAHEFHP ESHLQIKNPL IKRSHIHETN GKTLPSSNPE ENSTTRP00000002725/1-1005 GFRKELKNLE VAYKSYESHP ESYLQIKNPL IKRSHIRETN GKLFPSSNPQ bmy_07323T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU004221/1-1112 GFRKELKNLE VAYKSYESHP ESHLQIKNPL IKRSHIRETN GNLFPSSSPQ 801 850 ENSP00000409906/1-1073 IPKDHNAREH IHQSDEQKLE KPNECKFSEW LNIENSERTG LPFHVD-NSA ENSBTAP00000045997/1-1112 ILKDHTVREH THQSDEQKLE KSSEPKFSEW LNKEKSEKTG LLFHTDDNSG ENSTTRP00000002725/1-1005 ILKDHTAREH THQSDEQKLE KASECKFSEW LNIENSEGTG LLFHVDDNSA bmy_07323T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU004221/1-1112 ILKDHTAREH THQSDEQKLE KSSECKFSDW LNIENSERTG LLFHVDGNSA 851 900 ENSP00000409906/1-1073 SGKRVNSNE- --PSSLWSSH LRTVGLKPET APLIQQQNIM DQCYFENSLS ENSBTAP00000045997/1-1112 SGKRVNSNET VSPSSSWSSH MRTVGSKPET APLIQQQNMM ERYYSENSLP ENSTTRP00000002725/1-1005 SAKRVNSNGT VSPSSLWSSH MRTVGLKPGT APLIQQQNTI EQCYSENSLS bmy_07323T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU004221/1-1112 SGKRVNSNGT VSPSSLWSSH MRTVGLKPGT PPLIQQQNMM EQCYSENSLS 901 950 ENSP00000409906/1-1073 TECIIRSASR SDGCQMPKLF CQNLPPPLPP KKYAITSVPQ SEKSESTPDV ENSBTAP00000045997/1-1112 REHLVQSTCR SDGCQMPKLV CQNAPPPLPP KKYAMTSVPQ SEKNDSTPDV ENSTTRP00000002725/1-1005 REHLIQSTCR SDGCQMPELV CQNTPPPLPP KKYAITSVPQ SEKNDAPPAV bmy_07323T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU004221/1-1112 REHLIQSPCR SDGCQMPELV CQNTPPPLPP KKYAITSVPP SGKNDAPPAV 951 1000 ENSP00000409906/1-1073 KLTEVFKA-T SHLPKHSLST ASEPSLEVST HMNDERHKET FQVRECFGNT ENSBTAP00000045997/1-1112 KVTETFKTNS SSLLKHSLST ASELGVDMSL YVNDERFKDT FQAKEYVSNT ENSTTRP00000002725/1-1005 -PTEMFKANS SSLPKHSLST ASEPGLEVST HMNDERLKET FQ-KEYVGNT bmy_07323T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU004221/1-1112 KPAEMFKANS SSLPKHSLST ASEPGLEVST YMNDERLKET FQAKEYVGNT 1001 1050 ENSP00000409906/1-1073 PNCPSSSSTN DFQANSG-AI DAFCQPELDS ISTCPNETVS LTTYFSVDSC ENSBTAP00000045997/1-1112 SNTPSSSATK DFQADSGRAV GAFCQPETDS SSTCPNETVS LTTYFSVDNC ENSTTRP00000002725/1-1005 SNTPSSSSAN DFQADS---- ---------- ---------- ---------- bmy_07323T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU004221/1-1112 SNTPSSSSAN DFQADSGTAV GASCQPEIDS SSTCPNETIS LTTYFSVDNC 1051 1100 ENSP00000409906/1-1073 MTDTYRLKYH QRPKLSFPES SGFCNNSLS- ---------- ---------- ENSBTAP00000045997/1-1112 MTDTYRLKYH QRPKLCFPEN SGFCNDNSLS QNERELGPVL HSSFGSNCPS ENSTTRP00000002725/1-1005 ---------- ---------- ---------- ---------- ---------- bmy_07323T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU004221/1-1112 MTDTYRLKYH QRPKLCFPES SGFCNDNSLS QNERGLEPVL HSSLGSNCPS 1101 1150 ENSP00000409906/1-1073 ---------- -- ENSBTAP00000045997/1-1112 EQKHKPGIYC NR ENSTTRP00000002725/1-1005 ---------- -- bmy_07323T0/1-742 ---------- -- BACU004221/1-1112 KQRYKPGIHC NR