KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:57:24 2014 Check: 00 ..
Name: ENSBTAP00000046062/1-227 Len: 273 Check: 4453 Weight: 1.00
Name: ENSTTRP00000007328/1-202 Len: 273 Check: 3771 Weight: 1.00
Name: ENSP00000335091/1-227 Len: 273 Check: 5663 Weight: 1.00
Name: bmy_20385T0/1-192 Len: 273 Check: 3315 Weight: 1.00
Name: BACU018190/1-152 Len: 273 Check: 7153 Weight: 1.00
//
1 50
ENSBTAP00000046062/1-227 MGGKQSTAAR SRGPFPGVST DDSAVPPPGG APHFGHYRAG GGAMGLRSRS
ENSTTRP00000007328/1-202 ---------- ---------- ---------- ---------- ----------
ENSP00000335091/1-227 MGGKQSTAAR SRGPFPGVST DDSAVPPPGG APHFGHYRTG GGAMGLRSRS
bmy_20385T0/1-192 MGGKQSTAAR SRGPFPGVST DDSAVPPPGG APHFGHYRAG GGAMGLRSRS
BACU018190/1-152 MGGKQSTAAR SRGPFPGVST DDSAVPPPGG APHFGHYRAG GGAMGLRSRS
51 100
ENSBTAP00000046062/1-227 VSSVAGMGMD PSSAGGVSFG LYTPASRGAG DAERAPGSGG SASDSTYAHG
ENSTTRP00000007328/1-202 ---------- ---------- LFNPASRGTG DSERAPGGGG SASDSTYAHG
ENSP00000335091/1-227 VSSVAGMGMD PSTAGGVPFG LYTPASRGTG DSERAPGGGG SASDSTYAHG
bmy_20385T0/1-192 VSSVAGMGMD PSTAGGVPFG LYTPASRGTG DSERAPGGGG SASDSTYAHG
BACU018190/1-152 VSSVAGMGMD PSLAGGVPFG LYTPASRGTG DSERAPGGGG SASDSTYAHG
101 150
ENSBTAP00000046062/1-227 NGYQETGGGH HRDGMLYLGS RASLADALPL HIAPRWFSSH SGFKCPICSK
ENSTTRP00000007328/1-202 NGY-ETGGGH HRDGMLYLGS RASLADALPL HIAPRWFSSH SGFKCPICSK
ENSP00000335091/1-227 NGYQETGGGH HRDGMLYLGS RASLADALPL HIAPRWFSSH SGFKCPICSK
bmy_20385T0/1-192 NGYQETGGGH HRDGMLYLGS RASLADALPL HIAPRWFSSH SG-------E
BACU018190/1-152 NGYQETGGGH HRDGMLYLGS RASLADALPL HIAPRWFSSH SA--------
151 200
ENSBTAP00000046062/1-227 SVASDEMEMH FIMCLSKPRL SYN------- ---------- ----------
ENSTTRP00000007328/1-202 SVASDEMEMH FIMCLSKPRL SYNVRTQSSL RGAPDRPGLL ASGRTLGQLW
ENSP00000335091/1-227 SVASDEMEMH FIMCLSKPRL SYN------- ---------- ----------
bmy_20385T0/1-192 SAVGGGLRGW SA-------- ---------- ---------- ----------
BACU018190/1-152 ----RQLDKY KI-------- ---------- ---------- ----------
201 250
ENSBTAP00000046062/1-227 ---------- ---------D DVLTKDAGEC VICLEELLQG DTIARLPCLC
ENSTTRP00000007328/1-202 RAERSWGHGG PTCPVDSGGD DVLTKDAGEC VICLEELLQG DTIARLPCLC
ENSP00000335091/1-227 ---------- ---------D DVLTKDAGEC VICLEELLQG DTIARLPCLC
bmy_20385T0/1-192 ---------- ---------S EGAPGRPTPS RVCEDLEVEC ATWICLPS--
BACU018190/1-152 ---------- ---------- ------SG-- ---------- ----------
251 300
ENSBTAP00000046062/1-227 IYHKSCIDSW FEVNRSCPEH PAD
ENSTTRP00000007328/1-202 IYHKSCIDSW FEVNRSCPEH PAD
ENSP00000335091/1-227 IYHKSCIDSW FEVNRSCPEH PAD
bmy_20385T0/1-192 --------PW FAEAKG---- ---
BACU018190/1-152 ---------- ---------- ---