KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:24 2014 Check: 00 .. Name: ENSBTAP00000046062/1-227 Len: 273 Check: 4453 Weight: 1.00 Name: ENSTTRP00000007328/1-202 Len: 273 Check: 3771 Weight: 1.00 Name: ENSP00000335091/1-227 Len: 273 Check: 5663 Weight: 1.00 Name: bmy_20385T0/1-192 Len: 273 Check: 3315 Weight: 1.00 Name: BACU018190/1-152 Len: 273 Check: 7153 Weight: 1.00 // 1 50 ENSBTAP00000046062/1-227 MGGKQSTAAR SRGPFPGVST DDSAVPPPGG APHFGHYRAG GGAMGLRSRS ENSTTRP00000007328/1-202 ---------- ---------- ---------- ---------- ---------- ENSP00000335091/1-227 MGGKQSTAAR SRGPFPGVST DDSAVPPPGG APHFGHYRTG GGAMGLRSRS bmy_20385T0/1-192 MGGKQSTAAR SRGPFPGVST DDSAVPPPGG APHFGHYRAG GGAMGLRSRS BACU018190/1-152 MGGKQSTAAR SRGPFPGVST DDSAVPPPGG APHFGHYRAG GGAMGLRSRS 51 100 ENSBTAP00000046062/1-227 VSSVAGMGMD PSSAGGVSFG LYTPASRGAG DAERAPGSGG SASDSTYAHG ENSTTRP00000007328/1-202 ---------- ---------- LFNPASRGTG DSERAPGGGG SASDSTYAHG ENSP00000335091/1-227 VSSVAGMGMD PSTAGGVPFG LYTPASRGTG DSERAPGGGG SASDSTYAHG bmy_20385T0/1-192 VSSVAGMGMD PSTAGGVPFG LYTPASRGTG DSERAPGGGG SASDSTYAHG BACU018190/1-152 VSSVAGMGMD PSLAGGVPFG LYTPASRGTG DSERAPGGGG SASDSTYAHG 101 150 ENSBTAP00000046062/1-227 NGYQETGGGH HRDGMLYLGS RASLADALPL HIAPRWFSSH SGFKCPICSK ENSTTRP00000007328/1-202 NGY-ETGGGH HRDGMLYLGS RASLADALPL HIAPRWFSSH SGFKCPICSK ENSP00000335091/1-227 NGYQETGGGH HRDGMLYLGS RASLADALPL HIAPRWFSSH SGFKCPICSK bmy_20385T0/1-192 NGYQETGGGH HRDGMLYLGS RASLADALPL HIAPRWFSSH SG-------E BACU018190/1-152 NGYQETGGGH HRDGMLYLGS RASLADALPL HIAPRWFSSH SA-------- 151 200 ENSBTAP00000046062/1-227 SVASDEMEMH FIMCLSKPRL SYN------- ---------- ---------- ENSTTRP00000007328/1-202 SVASDEMEMH FIMCLSKPRL SYNVRTQSSL RGAPDRPGLL ASGRTLGQLW ENSP00000335091/1-227 SVASDEMEMH FIMCLSKPRL SYN------- ---------- ---------- bmy_20385T0/1-192 SAVGGGLRGW SA-------- ---------- ---------- ---------- BACU018190/1-152 ----RQLDKY KI-------- ---------- ---------- ---------- 201 250 ENSBTAP00000046062/1-227 ---------- ---------D DVLTKDAGEC VICLEELLQG DTIARLPCLC ENSTTRP00000007328/1-202 RAERSWGHGG PTCPVDSGGD DVLTKDAGEC VICLEELLQG DTIARLPCLC ENSP00000335091/1-227 ---------- ---------D DVLTKDAGEC VICLEELLQG DTIARLPCLC bmy_20385T0/1-192 ---------- ---------S EGAPGRPTPS RVCEDLEVEC ATWICLPS-- BACU018190/1-152 ---------- ---------- ------SG-- ---------- ---------- 251 300 ENSBTAP00000046062/1-227 IYHKSCIDSW FEVNRSCPEH PAD ENSTTRP00000007328/1-202 IYHKSCIDSW FEVNRSCPEH PAD ENSP00000335091/1-227 IYHKSCIDSW FEVNRSCPEH PAD bmy_20385T0/1-192 --------PW FAEAKG---- --- BACU018190/1-152 ---------- ---------- ---