KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:57:24 2014 Check: 00 .. Name: ENSBTAP00000046086/1-843 Len: 881 Check: 406 Weight: 1.00 Name: ENSTTRP00000002049/1-824 Len: 881 Check: 5859 Weight: 1.00 Name: bmy_19225T0/1-864 Len: 881 Check: 6120 Weight: 1.00 Name: BACU006273/1-870 Len: 881 Check: 3547 Weight: 1.00 // 1 50 ENSBTAP00000046086/1-843 MTIQFRSLFP LALPGVLALL GWWWFFSRKK EPLDSHDRAA EAGAVALRAG ENSTTRP00000002049/1-824 ---------- ---------- ---------- ---------- ----VKLRAG bmy_19225T0/1-864 MAIQLRSLFP LALPGVLALL GWWWFFSRKK EHISNHNQQM GASAVKLRAG BACU006273/1-870 MAIQFRSLFP LALPGVLALL GWWWFFSRKK EHVRSHNKQM GASAVKLRAG 51 100 ENSBTAP00000046086/1-843 PEAQEVLPVE DSRPGAASP- -----PPERE LCGGGRPSPE PAALLRAHPA ENSTTRP00000002049/1-824 PDTEGPLPAE D-CPGAAAPP PGAAQPPERE LPTASKPPVE PP-LLRAHPA bmy_19225T0/1-864 PAAEEAVPVE DPSPGAVAPP PGATQPPERE LRTASKPPGE PPALLRAHPA BACU006273/1-870 PAAEEAVPVE DPSPGAAAPP PGAAQPPERE LPTASKPPGE LPALLRAHPA 101 150 ENSBTAP00000046086/1-843 CRRSESSGSL PNPADTRLRP GARKE----V ELTLAGDEAK AVPLECPLPA ENSTTRP00000002049/1-824 YRRPESSGGL PNTADTRFPP GPCKEDSARV ELALTGDEAK CAPLECPLPS bmy_19225T0/1-864 YRRSESSRGL PSTADTRFRP GPRKEDSARV ELALTGDEAK SAPLECPLPS BACU006273/1-870 YRRSESSRGL PSTADTRFRP GPRREDSARM ELALTGDEAK SAPLECPLPS 151 200 ENSBTAP00000046086/1-843 PKGLPFPHEA VEVCKREAVL GRPGGRGRQG QPAAPAEKPA PEEKARETGG ENSTTRP00000002049/1-824 PKGVPFPHEA AEVCNRETVM GRPAGRCQQG QSAAPAEKVD PGEKTREMGG bmy_19225T0/1-864 PKGVPFPHEA AEVCNRETVM GRPAGWRRQG PPAAPAEKVG PGEKTREMGG BACU006273/1-870 PKGVPFPHEA AEVCNRETVM GRPAGWRRQG PPAAPAEKVG PGEKTREMGG 201 250 ENSBTAP00000046086/1-843 AEGTGDAVLG ENVLEEGPAA WEPAPELELQ SSRA------ AGAGEK---- ENSTTRP00000002049/1-824 AESTGDAVTG ENVPEEGPVS REQGP--ELP SSRAPSLAPL GGGGEKG-SS bmy_19225T0/1-864 AEGTGDAVMG ENVLEEGPVS REQGP--ELP SSRAPSLAPL GGGGEKGRSS BACU006273/1-870 AEGTGDAVMG ENVLEEGPVS REQGP--ELL SSRAPSLAPL GGGGEKGRSS 251 300 ENSBTAP00000046086/1-843 ------DP-G RLL----EEA VVEAAPEEET LAPRGLAGRA WDGAFPQEQG ENSTTRP00000002049/1-824 LLAVDEDPVG KLLSSFVESA HSELATPDET PAPRVRGSRG WDGDFSRELG bmy_19225T0/1-864 LLAVGEDPVG QLLSSFVESA HSELATPDET PTPRVRGSRG WDGDFSRELG BACU006273/1-870 VLAVGEEPVG QLLSSFVESA HAELATPDET PTPRVRGSRG WDGDFSRELS 301 350 ENSBTAP00000046086/1-843 GEETWDRSEK IEQAAFQIIS KVILEATEEV LATTMGRIAG RVYQASATQP ENSTTRP00000002049/1-824 KEETLDRNEK VEQAAFQIIS KVILEATEEV LSTTMGRIAG RMHPASAAQL bmy_19225T0/1-864 KEETLDKNEK VEQAAFQIIS KVILEATEEV LTTTMGRIAG RMYQASAAQP BACU006273/1-870 KEETLDKNEK VEQAAFQIIS KVILEATEEV LTTTMGRIAG RMYQAPAAQP 351 400 ENSBTAP00000046086/1-843 QGLK-EESCA PASQKTPLGL EASEPTLTAV EAAPGLRDTA LPSTEPPAGD ENSTTRP00000002049/1-824 QGPK-EESCA RAHQRAALGQ DAAEPALATA EAATGPVDAA FPSADLPAED bmy_19225T0/1-864 QGLKEEESCA RANQKTALGQ HAAEPALAAA EAATGPAGAA FPSADLLAED BACU006273/1-870 QGPKEEEGCA RANQKTALGQ RAAEPALATA EAATGPVGAA FPSADLLAED 401 450 ENSBTAP00000046086/1-843 LPAPKTYVSC LSSPLSSPTK DRKPKNSAHH ISLAPCPLPA APLRELLDEA ENSTTRP00000002049/1-824 LPPPKTYVSC LTSPLSSPTK DRKPKNSAHH VSLAPCPPPA ASLGESLDEA bmy_19225T0/1-864 LPPPKTYVSC LTSPLSSPTK DRKPKNSMYH VSLAPHPPPA APLGESLDEA BACU006273/1-870 LPPPKTYVSC LTSPLSSPTQ DRKPKNSTHH ISLAPCPPPA APLGESLDEA 451 500 ENSBTAP00000046086/1-843 GGTGEETTHV PCVSDGGQAV PCGAASGQCS DSASTSGLED CCLETSPSPR ENSTTRP00000002049/1-824 SILAEDAACV TCVSSNGQGV PSVASSGQCS DSVSTSGLED SCTETTSSPR bmy_19225T0/1-864 SILAEDAACV TCMSNNGQGV PSVASSGQCS DSVSTSGLED SCTETTSSPR BACU006273/1-870 SILAEDAACV TCMSNNGQGV PSVASSGQCS DSVSTSGLED SCTETTSSPR 501 550 ENSBTAP00000046086/1-843 GEAATPPLPE STVPVSNGVL KGELSDLGTE DGWTVDAEAD HSGGSDGNSM ENSTTRP00000002049/1-824 DKATTPLLPE STVPFSNGVL KGELSDLGAE DGWTVGAEAD HSGGSDGNSM bmy_19225T0/1-864 DKATTPLLPE STVPFSNGVL KGELSDLGAE DGWTVDAEAD HSGGSDGNSM BACU006273/1-870 DKATTPLLPE STVPFSNGVL KGELSDLGAE DGWTVDAEAD HSGGSDGNSM 551 600 ENSBTAP00000046086/1-843 DSVDSCCGFR KPDDFQNAQA GSNPKKVDLI IWEIEVPKHL VGRLIGKQGR ENSTTRP00000002049/1-824 DSVDSCCGLR KPDGFQNAQA GSHPKKVDLT VWEIEVPKHL VGRLIGKQGR bmy_19225T0/1-864 DSVDSCCGLR KPDGFQNAQA GSHPKKVDLT VWEIEVPKHL VGRLIGKQGR BACU006273/1-870 DSVDSCCGLR KPDGFQNAQA GSHPKKVDLT VWEIEVPKHL VGRLIGKQGR 601 650 ENSBTAP00000046086/1-843 YVSFLKQTSG AKIYISTLPY TQNIQVCHIE GSQHHVDKAL NLIGKKFKEL ENSTTRP00000002049/1-824 YVSFLKQTSG AKIYISSLPY TQNVQICHIE GSQHHVDKAL SLIGKKFKEL bmy_19225T0/1-864 YVSFLKQTSG AKIYISTLPY TQNIQICHIE GSQHHVDKAL SLIGKKFKEL BACU006273/1-870 YVSFLKQTSG AKIYISTLPY TQNIQICHIE GSQHHVDKAL SLIGKKFKEL 651 700 ENSBTAP00000046086/1-843 NLTNIYAPPL PSLALPSLPM TSWLMLPDGV TVEVIVVNQV NAGHLFVQQH ENSTTRP00000002049/1-824 NLTNIYAPPL PSLALPSLPM TSWLMLPDGI TVEVIVVNQV NAGHLFVQQH bmy_19225T0/1-864 NLTNIYAPPL PSLALPSLPM TSWLMLPDGI TVEVIVVNQV NAGHLFVQQH BACU006273/1-870 NLTNIYAPPL PSLALPSLPM TSWLMLPDGI TVEVIVVSQV NAGHLFVQQH 701 750 ENSBTAP00000046086/1-843 THPTFHALRS LDQQMYLCYS QPGIPTLPTP VEITVICAAP GVDGAWWRAQ ENSTTRP00000002049/1-824 THPTFHALRS LDQQMYLCYS QPGIPTLPTP VEITVICAAP GVDGAWWRAQ bmy_19225T0/1-864 THPTFHALRS LDQQMYLCYS QPGIPTLPTP VEITVICAAP GMDGAWWRAQ BACU006273/1-870 THPTFHALRS LDQQMYLCYS QPGIPTLPTP VEITVICAAP GMDGAWWRAQ 751 800 ENSBTAP00000046086/1-843 VVAAYEDTNE VEIRYVDYGG YKRVKVDVLR QIRSDFVTLP FQGAEVLLDS ENSTTRP00000002049/1-824 VVASYEETNE VEIRYVDYGG YKRVKVGVLR QIRXXXXXXX XXXXXXXLDS bmy_19225T0/1-864 VVASYEETNE VEIRYVDYGG YKRVKVDVLR QIRSDFVTLP FQGAEVLLDS BACU006273/1-870 VVASYEETNE VEIRYVDYGG YKRVKVDVLR QIRSDFVTLP FQGAEVLLDS 801 850 ENSBTAP00000046086/1-843 VMPLSDDDHF SPEADAAMSE MTGNTALLAQ VTSYSPTGLP LIQLWSVVGD ENSTTRP00000002049/1-824 VMP-SNDDHF SPEADAAMSE MTGNAALLAQ VTRYSPTGLP LIQLWSVIGD bmy_19225T0/1-864 VMPLSDDDHF SPEADAAVSE MTGNTALLAQ VCGWGARG-- --RLDRVV-- BACU006273/1-870 VMPLSDDDHF SPEADAAVSE MTGNTALLAQ VTSYSPAGLP LIQLWSVIGD 851 900 ENSBTAP00000046086/1-843 EVV------L INRSLVERGL AQWVDSCYSS L ENSTTRP00000002049/1-824 EVV------L INRSLVERGL AQWVDSYYSS L bmy_19225T0/1-864 ---------L INRSLVERGL AQWVDSYYSS L BACU006273/1-870 EVSSVLLPLL TSRDAV--GG HSWE------ -