KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:57:25 2014  Check: 00 ..

 Name: ENSBTAP00000046090/1-190  Len:    252  Check:  3754  Weight:  1.00
 Name: ENSP00000330433/1-247     Len:    252  Check:  9977  Weight:  1.00
 Name: ENSTTRP00000015361/1-246  Len:    252  Check:  9212  Weight:  1.00
 Name: bmy_15461T0/1-252         Len:    252  Check:  953  Weight:  1.00
 Name: BACU001799/1-252          Len:    252  Check:  1746  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000046090/1-190  MAAAVVLLRP LCRLCRVVLF LSQFYILSGG ---------- ---------- 
ENSP00000330433/1-247     MAGGVLPLRG LRALCRVLLF LSQFCILSGG -----EQSQA LAQSIKDPGP 
ENSTTRP00000015361/1-246  MAPAGVLLWD LRRLCRVLLF LSQFYILSGG -----EPSQP LAQSDKDPGP 
bmy_15461T0/1-252         MAAAGDLLRG LRRLCRVLLF LSQFYILSGG GSFSVEPSQP LAQSDKDPGP 
BACU001799/1-252          MAAAGVLLRD LRRLCRVLLF LSQFYILSGG GSFSVEPSQP LAQSDKDPGP 


                          51                                                 100
ENSBTAP00000046090/1-190  ---------- -ESTDIPPYV MKCPSNGLCS RLPADCIDCK TNFSCVYGKP 
ENSP00000330433/1-247     TRTFTVVPRA AESTEIPPYV MKCPSNGLCS RLPADCIDCT TNFSCTYGKP 
ENSTTRP00000015361/1-246  TRTFTVVPRA AESTDIPPYM MKCPSNGLCS RLPADCIECK TNFSCVYGKP 
bmy_15461T0/1-252         TRTFTVVPRA AESTDIPPYM MKCPSNGLCS RLPADCIECK TNFSCVYGKP 
BACU001799/1-252          TRTFTVVPRA AESTDIPPYM MKCPSNGLCS RLPADCIECK TNFSCVYGKP 


                          101                                                150
ENSBTAP00000046090/1-190  VTFDCTVKPS VTCVDPDFKS QKSFVLNMTC RFCWQLPEAD YECFSSSDCR 
ENSP00000330433/1-247     VTFDCAVKPS VTCVDQDFKS QKNFIINMTC RFCWQLPETD YECTNSTSCM 
ENSTTRP00000015361/1-246  VTFDCTVKPS VTCVDQDFKS RKSFVLNMTC RFCWQL-GTD YECSSSTSCM 
bmy_15461T0/1-252         VTFDCTVKPS VTCVDQDFKS RKSFVLNMTC RFCWQLPETD YECSSSTSCM 
BACU001799/1-252          VTFDCTVKPS VTCVDQDFKS RKSFVLNMTC RFCWQLPETD YECSSSTSCM 


                          151                                                200
ENSBTAP00000046090/1-190  AVSCPRQRYP TNCTVRDHVH CLGNRTFPKM LYCNWTGGYK WSTALALR-- 
ENSP00000330433/1-247     TVSCPRQRYP ANCTVRDHVH CLGNRTFPKM LYCNWTGGYK WSTALALSIT 
ENSTTRP00000015361/1-246  AVSCPRQRYT ANCTVRDHVH CLGNRTFPKM LYCNWTGGYK WSTALALSIT 
bmy_15461T0/1-252         AVSCPRQRYT ANCTVRDHIH CLGNRTFPKM LYCNWTGGYK WSTALALSIT 
BACU001799/1-252          AVSCPRQRYT ANCTVRDHVH CLGNRTFPKM LYCNWTGGYK WSTALALSIT 


                          201                                                250
ENSBTAP00000046090/1-190  ---------- --------DL IMMYPGMSLF QLI---LFTV CLTS------ 
ENSP00000330433/1-247     LGGFGADRFY LGQWREGLGK LFSFGGLGIW TLIDVLLIGV GYVGPADGSL 
ENSTTRP00000015361/1-246  LGGFGADRFY LGQWREGLGK LFSFGGLGIW TLLDVLLIGV GYVGPADGSL 
bmy_15461T0/1-252         LGGFGADRFY LGQWREGLGK LFSFGGLGIW TLLDVLLIGV GYVGPADGSL 
BACU001799/1-252          LGGFGADRFY LGQWREGLGK LFSFGGLGIW TLLDVLLIGV GYVGPADGSL 


                          251                                                300
ENSBTAP00000046090/1-190  -- 
ENSP00000330433/1-247     YI 
ENSTTRP00000015361/1-246  YI 
bmy_15461T0/1-252         YI 
BACU001799/1-252          YI