KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:25 2014 Check: 00 .. Name: bmy_09328T0/1-492 Len: 539 Check: 7951 Weight: 1.00 Name: ENSP00000355559/1-500 Len: 539 Check: 9848 Weight: 1.00 Name: ENSBTAP00000046091/1-501 Len: 539 Check: 2259 Weight: 1.00 Name: BACU019357/1-450 Len: 539 Check: 3917 Weight: 1.00 Name: ENSTTRP00000007359/1-450 Len: 539 Check: 3714 Weight: 1.00 // 1 50 bmy_09328T0/1-492 MRRVSVVPFP TCL------- ---------- --------AC DLLPDLRGRG ENSP00000355559/1-500 MRNWLVLLCP CVLGAALHLW LRLRSPPPAC ASGAGPADQL ALFPQWKSTH ENSBTAP00000046091/1-501 MRNWLVLLCP CVLGAALHLW LRLRSPPPAR ASGAGPADQL ALFPQWKSNH BACU019357/1-450 ---------- ---------- ---------- --------QL ALLPQWKSSH ENSTTRP00000007359/1-450 ---------- ---------- ---------- --------QL ALLPQWKSRH 51 100 bmy_09328T0/1-492 -----GFRME SSSCKSKTNP GARWTVRVVS RGSVEMPKKI QRTLKA---- ENSP00000355559/1-500 YDVVVGVLSA RNNHELRNVI RSTWMRHLLQ HPTLSQRVLV KFIIGAHGCE ENSBTAP00000046091/1-501 YDVVVGVLSA RNNHQLRNVI RSTWLKHLLQ HPALSQRVLV KFIIGAHGCT BACU019357/1-450 YDVVVGVLSA RNNHELRNVI RSTWLKHLVQ HPALSQRVLV KFIIGAHGCE ENSTTRP00000007359/1-450 YDVVVGVLSA RNNHELRNVI RSTWLKHLVQ HPALSQRVLV KFIIGAHGCE 101 150 bmy_09328T0/1-492 ----NRRERL E--------- VLNQEIEAFS LLEDTSSGLS EDRVVSVSFR ENSP00000355559/1-500 VPVEDREDPY SCKLLNITNP VLNQEIEAFS LSEDTSSGLP EDRVVSVSFR ENSBTAP00000046091/1-501 VPVEDREDPY SCKLLNITNP VLNQEIEAFS LLEDTSSGLS EDRVVSVSFR BACU019357/1-450 VPVEDREDPY SCKLLNITNP VLNQEIEAFS LLEDTSSGLS EDRVVSVSFR ENSTTRP00000007359/1-450 VPVEDREDPY SCKLLNITNP VLNQEIEAFS LLEDTSSGLS EDRVVSVSFR 151 200 bmy_09328T0/1-492 VLYPIVITSL GVFYDANDVG FQRNITVKLY QAEQEEALFI ARFSPPSCGV ENSP00000355559/1-500 VLYPIVITSL GVFYDANDVG FQRNITVKLY QAEQEEALFI ARFSPPSCGV ENSBTAP00000046091/1-501 VLYPIVITSL GVFYDAGDVG FQRNITVKLY QAEQEEALFS ARFSPPSCGV BACU019357/1-450 VLYPIVITSL GVFYDANDVG FQRNITVKLY QAEQEEALFI ARFSPPSCGV ENSTTRP00000007359/1-450 VLYPIVITSL GVFYDASDVG FQRNITVKLY QAEQEEALFI ARFSPPSCGV 201 250 bmy_09328T0/1-492 QVNKLWYKPV EQFILPESFE GTIVWESQDL QGLVSRNLHK VTVNDGGGVL ENSP00000355559/1-500 QVNKLWYKPV EQFILPESFE GTIVWESQDL HGLVSRNLHK VTVNDGGGVL ENSBTAP00000046091/1-501 QVNKLWYKPV EQFILPESFE GTIVWESQDL QGLVSRNLHK VTVNDGGGVL BACU019357/1-450 QVNKLWYKPV EQFILPESFE GTIVWESQDL QGLVSRNLHK VTVNDGGGVL ENSTTRP00000007359/1-450 QVNKLWYKPV EQFILPESFE GTIVWESQDL QGLVSRNLHK VTVNDGGGVL 251 300 bmy_09328T0/1-492 RVITAGEGAL PHEFMEGVEG VAGGFLYTIQ EGDALLKNLH SRPRRLLDHI ENSP00000355559/1-500 RVITAGEGAL PHEFLEGVEG VAGGFIYTIQ EGDALLHNLH SRPQRLIDHI ENSBTAP00000046091/1-501 RVVTTGEGAL PHEFMEGVEG VAGGFIYTIQ EGDALLKTLH SRPRRLLDHI BACU019357/1-450 RVITAGEGAL PHEFMEGVEG VAGGFLYNIQ EGDALLKNLH SRPRRLLDHI ENSTTRP00000007359/1-450 RVITAGEGAL PHEFMEGVEG VAGGFIYTIQ EGDALLKNLH SRPRRLLDHI 301 350 bmy_09328T0/1-492 SNLHEEDALL KEESSLYDDI VFVDVVDTYR NVPAKLLNFY KWTVETTSFD ENSP00000355559/1-500 RNLHEEDALL KEESSIYDDI VFVDVVDTYR NVPAKLLNFY RWTVETTSFN ENSBTAP00000046091/1-501 HNLHEEDALL KEESSLYDDI VFVDVVDTYR NVPAKLLNFY RWTVETTSFD BACU019357/1-450 SNLHEEDALL KEESSLYDDI VFVDVVDTYR NVPAKLLNFY KWTVETTSFD ENSTTRP00000007359/1-450 SNLHEEDALL EEESSLYDDI VFVDVVDTYR NVPAKLLNFY KWTVETTSFD 351 400 bmy_09328T0/1-492 LLLKTDDDCY IDLEAVFNRI ALKNLDGPNF WWGKNAVGIA YSFVVIIKDS ENSP00000355559/1-500 LLLKTDDDCY IDLEAVFNRI VQKNLDGPNF WWG------- ---------- ENSBTAP00000046091/1-501 LLLKTDDDCY IDLEAVFNRI ALKNLDGPNF WWG------- ---------- BACU019357/1-450 LLLKTDDDCY IDLEAVFNRI ALKNLDGPNF WWG------- ---------- ENSTTRP00000007359/1-450 LLLKTDDDCY IDLEAVFNRI ALKNLDGPNF WWG------- ---------- 401 450 bmy_09328T0/1-492 SLTSGRLCVR ATQRSRLMLR VSFRLNWAVD RTGKWQELEY PSPAYPAFAC ENSP00000355559/1-500 ---------- ---------- -NFRLNWAVD RTGKWQELEY PSPAYPAFAC ENSBTAP00000046091/1-501 ---------- ---------- -NFRLNWAVD RTGKWQELEY PSPAYPAFAC BACU019357/1-450 ---------- ---------- -NFRLNWAVD RTGKWQELEY PSPAYPAFAC ENSTTRP00000007359/1-450 ---------- ---------- -NFRLNWAVD RTGKWQELEY PSPAYPAFAC 451 500 bmy_09328T0/1-492 GSGYVITRDI VHWLAGNSGR LKTYQGEDVS MGIWMAAIGP KRYQDSLWLC ENSP00000355559/1-500 GSGYVISKDI VKWLASNSGR LKTYQGEDVS MGIWMAAIGP KRYQDSLWLC ENSBTAP00000046091/1-501 GSGYVISRDI VHWLAGNSGR LKTYQGEDVS MGIWMAAIGP KRYQDSLWLC BACU019357/1-450 GSGYVITRDI VHWLAGNSGR LKTYQGEDVS MGIWMAAIGP KRYQDSLWLC ENSTTRP00000007359/1-450 GSGYVISRDI VHWLAGNSGR LKTYQGEDVS MGIWMAAIGP KRYQDSLWLC 501 550 bmy_09328T0/1-492 EKTCETGMLS SPQYSPRELT QLWKLKELCG DPCRCEARG ENSP00000355559/1-500 EKTCETGMLS SPQYSPWELT ELWKLKERCG DPCRCQAR- ENSBTAP00000046091/1-501 EKTCEPGMLS SPQYSPQELA QLWRLKELCG DPCRCEGRG BACU019357/1-450 EKTCETGMLS SPQYSPQELT QLWKLK---- --------- ENSTTRP00000007359/1-450 EKTCETGMLS SPQYSPQELT QLWKLK---- ---------