KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:57:28 2014 Check: 00 .. Name: bmy_05820T0/1-461 Len: 712 Check: 1898 Weight: 1.00 Name: ENSP00000339764/1-689 Len: 712 Check: 7734 Weight: 1.00 Name: BACU000822/1-515 Len: 712 Check: 2472 Weight: 1.00 Name: ENSBTAP00000046130/1-337 Len: 712 Check: 9515 Weight: 1.00 // 1 50 bmy_05820T0/1-461 MEDSGIQRGI WDGDAKAVQQ CLTDIFTSVY TTCDIPENAI FGPCILSHTS ENSP00000339764/1-689 MEDTGIQRGI WDGDAKAVQQ CLTDIFTSVY TTCDIPENAI FGPCVLSHTS BACU000822/1-515 MEDSGIQRGI WDGDAKAVQQ CLTDIFTSVY TTCDIPENAI FGPCILSHTS ENSBTAP00000046130/1-337 MEDSGIQRGI WEGDAKAVQQ CLTDIFTSVY TTCDIPENAI FGPCVLSHTS 51 100 bmy_05820T0/1-461 LYDSIAFIAL KSTDKRTVPY IFRVDTSAAN GSSEGLMWLR LVQSARDKEE ENSP00000339764/1-689 LYDSIAFIAL KSTDKRTVPY IFRVDTSAAN GSSEGLMWLR LVQSARDKEE BACU000822/1-515 LYDSIAFIAL KSTDKRTVPY IFRVDTSAAN GSSEGLMWLR LVQSARDKEE ENSBTAP00000046130/1-337 LYDSIAFIAL KSTDKRTVPY IFRVDTSAAN GSSEGLMWLR LVQSARDKEE 101 150 bmy_05820T0/1-461 QNLEAYIKNG QLFYRSLRRI AKDEELLVWY GKELTELLLL CPSRSHSKMN ENSP00000339764/1-689 QNLEAYIKNG QLFYRSLRRI AKDEELLVWY GKELTELLLL CPSRSHNKMN BACU000822/1-515 QNLEAYIKNG QLFYRSLRRI AKDEELLVWY GKELTELLLL CPSRSHSKMN ENSBTAP00000046130/1-337 QNLEAYIKNG QLFYRSLRRI AKDEELLVWY GKELTELLLL CPSRSHSKMN 151 200 bmy_05820T0/1-461 -GS------- ---------- ---------- -----VDVSP REEQGSGVGT ENSP00000339764/1-689 -GSSPYTCLE CSQRFQFEFP YVAHLRFRCP KRLHSADISP QDEQGGGVGT BACU000822/1-515 -GSSPYTCLE CSQRFQFEFP YVAHLRFRCP KRLHSVDVSP REEQGSGVGT ENSBTAP00000046130/1-337 AGSSPYTCLE CSQRFQFEFP YVAHLRFRCP KRLHGADLSP REEQGGSVGT 201 250 bmy_05820T0/1-461 KDH-GGGGGG KDQQPPQPQE TPLGPSPKFC KAGPVHHYPA PSPEGGNPPA ENSP00000339764/1-689 KDHGGGGGGG KDQQ-QQQQE APLGPGPKFC KAGPLHHYPS PSPESSNPSA BACU000822/1-515 KDH-GGGGGG KDQQPPQPQE APLGPSPKFC KAGP------ -----NPPAA ENSBTAP00000046130/1-337 KDHGGGGGGG KDQQ--QSQE APLGPGPKFC KAG------- ---------- 251 300 bmy_05820T0/1-461 AGGGGSSAKP STDFHNLARE LENSGGASSC SPVRSLS--- ---GGSDHQE ENSP00000339764/1-689 A-AGGSSAKP STDFHNLARE LENSRGGSSC SPAQSLSSGS GSGGGGGHQE BACU000822/1-515 GGGGGSSAKP STDFHNLARE LENSGGASSC SPVRSLS--- ---GGSDHQE ENSBTAP00000046130/1-337 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_05820T0/1-461 AELSPDGNAA G--------- ---------- ---------- ---------- ENSP00000339764/1-689 AELSPDGIAT GGGKGKRKFP EEAAEGGGGA GLVGGRGRFV ERPLPASKED BACU000822/1-515 AELSPDGNAA GVGKGKRKFP EEAAEGGGG- ---------- ---------- ENSBTAP00000046130/1-337 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_05820T0/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000339764/1-689 LVCTPQQYRA SGSYFGLEEN GRLFAPPSPE TGEAKRSAFV EVKKAARAAS BACU000822/1-515 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000046130/1-337 ---------- ---------- ---------- ---------- ---------- 401 450 bmy_05820T0/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000339764/1-689 LQEEGTADGA GVASEDQDAG GGGGSSTPAA ASPVGAEKLL APRPGGPLPS BACU000822/1-515 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000046130/1-337 ---------- ---------- ---------- ---------- ---------- 451 500 bmy_05820T0/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000339764/1-689 RLEGGSPARG SAFTSVPQLG SAGSTSGGGG TGAGAAGGAG GGQGAASDER BACU000822/1-515 ---------- ---------- ---------- ---------G AGLGAASDER ENSBTAP00000046130/1-337 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_05820T0/1-461 ------PARS FSQLSPLVLG QKLSALEPCH PGDGVGPTRL YPAASDPLAV ENSP00000339764/1-689 KSAFSQPARS FSQLSPLVLG QKLGALEPCH PADGVGPTRL YPAAADPLAV BACU000822/1-515 KSAFSQPARS FSQLSPLVLG QKLSALEPCH PGDGVGPTRL YPAASDPLAV ENSBTAP00000046130/1-337 ---------- ---------- ---------- ------PVHH YPAPS----- 551 600 bmy_05820T0/1-461 KLQGAADLNG GCGSLPSGGG GGGGGGLPKQ SPFLYATAFW PKSS-AAAAA ENSP00000339764/1-689 KLQGAADLNG GCGSLPSGGG G-----LPKQ SPFLYATAFW PKSSAAAAAA BACU000822/1-515 KLQGAADLNG GCGSLPSGGG G-GGGGLPKQ SPFLYATAFW PKSSAAAAAA ENSBTAP00000046130/1-337 ---------- -----PESGG G--------- ---------- ---------- 601 650 bmy_05820T0/1-461 AAAAAAGPLQ LQLPSALTLL PPSFTSLCLP AQNWCAKCNA SFRMTSDLVY ENSP00000339764/1-689 AAAAAAGPLQ LQLPSALTLL PPSFTSLCLP AQNWCAKCNA SFRMTSDLVY BACU000822/1-515 AAGGRGAP-- -----AVAAA LGAHAAAALL HLSVSARAEL VRQVQCLLPH ENSBTAP00000046130/1-337 ----CGAP-- -----AVAAA VGAHAAAALV HLAVSARAEL VRQVQCLLPH 651 700 bmy_05820T0/1-461 HMRSHHKKEY AMEPLVKR-- ----RREEKL KCPICNESFR ERHHLSR--- ENSP00000339764/1-689 HMRSHHKKEY AMEPLVKR-- ----RREEKL KCPICNESFR ERHHLSR--- BACU000822/1-515 DLRPGVPHEV ASQKGVRHGA LGEAKTGGET QVP------- ---HLQRVLQ ENSBTAP00000046130/1-337 DLRPSVPHEV ASQKGVRHGA LGEAEAGGET QVP------- ---HLQRVLQ 701 750 bmy_05820T0/1-461 ----HMTSHN -- ENSP00000339764/1-689 ----HMTSHN -- BACU000822/1-515 GAPPPLQAHD LA ENSBTAP00000046130/1-337 GAPPPLQAYD LA