KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:29 2014 Check: 00 .. Name: BACU002708/1-318 Len: 359 Check: 2449 Weight: 1.00 Name: ENSP00000358730/1-347 Len: 359 Check: 3357 Weight: 1.00 Name: ENSBTAP00000046189/1-205 Len: 359 Check: 8561 Weight: 1.00 Name: ENSTTRP00000001460/1-347 Len: 359 Check: 6107 Weight: 1.00 Name: bmy_20743T0/1-215 Len: 359 Check: 6826 Weight: 1.00 // 1 50 BACU002708/1-318 MPVNSTAVSL ANATYITVEI LIGLCAIVGN VLVIWVVKLN PSLQNTTFYF ENSP00000358730/1-347 MPNNSTALSL ANVTYITMEI FIGLCAIVGN VLVICVVKLN PSLQTTTFYF ENSBTAP00000046189/1-205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001460/1-347 MPVNSTAVSL ANATYITVEI LIGLCAXXXX XXXXXXXXXX XXXXXXXXXX bmy_20743T0/1-215 ---------- ---------- ---------- ---------- ---------- 51 100 BACU002708/1-318 IVSLALADIA VGVLVMPLAI VISLGVTIHF YSCLLMTCLL LIFTHASIMS ENSP00000358730/1-347 IVSLALADIA VGVLVMPLAI VVSLGITIHF YSCLFMTCLL LIFTHASIMS ENSBTAP00000046189/1-205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001460/1-347 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20743T0/1-215 ---------- ---------- ---------- ---------- ---------- 101 150 BACU002708/1-318 LLAIAVDRYL RVKLTVRYKR VTTQRRIWLA ------LGLC WLVSFLVGLT ENSP00000358730/1-347 LLAIAVDRYL RVKLTVRFRI PGLPGCILSF QLKVCFLPVM WLF-ILLSLA ENSBTAP00000046189/1-205 ---------- ---------- ---------- ---------M RLF-ILLSLT ENSTTRP00000001460/1-347 XXXXXXXXXX XXXXXXXSRI PKTTGSIWSS QLKVHFLPVM RLF-ILLSLT bmy_20743T0/1-215 ---------- ---------- ---------- ---------M RLF-ILLSLT 151 200 BACU002708/1-318 PMFGWNMKLN SEYHKNLTFL S----CQFRS VVRMDYMVYF S--FFTWIFI ENSP00000358730/1-347 -LISDAMVMD EKVKRSFVLD TASAICNYNA HYK-NHPKYW CRGYFRD-YC ENSBTAP00000046189/1-205 -VFSDAMVMD EKVKESFVLD TASAICNYDT HYK-DHPKYW CRGYFRY-YC ENSTTRP00000001460/1-347 -VFSDAMVMD EKVKESFVLE TASAICNYDA H-K-DHPKYR CRGYFRD-YC bmy_20743T0/1-215 -VFSDAMVMD EKVKESFVLD TASTICNYDA HYK-DHPKYW CRGYFQD-YC 201 250 BACU002708/1-318 PLVVMCAIYL DIFYVIRNKL NQ-----NFS NSKETGAFY- --GREFKTAK ENSP00000358730/1-347 NIIAFSPNST NHV-ALRDTG NQLIVTMSCL TKEDTGWYWC GIQRDFARDD ENSBTAP00000046189/1-205 NIIAFTPNST DRV-ALRDTG NQLIVTVSCL TKEDTGWYWC GIQRDFARDD ENSTTRP00000001460/1-347 NIIAFTPNST DRV-ALRDTG NQLIVTVSCL TKEDTGWHWC SIQWDFARDD bmy_20743T0/1-215 NIIAFTPNST DRV-ALRDIG NQLIVTVSCL TKEDTGWYWC GIQRDFARDD 251 300 BACU002708/1-318 SLFLVLFLF- ---ALS---W L--------P LSVINCIIYF NGEVPQVVLY ENSP00000358730/1-347 MDFTELIVTD DKGTLANDFW SGKDLSGNKT RSCKAPKVVR KADRSRTSIL ENSBTAP00000046189/1-205 MDFTELVVTD DRRAITNNFW SGQDLSGNKN RSCRASKVVH KADHSRMSIL ENSTTRP00000001460/1-347 MDFTELVVTD NRRALANNFW SGRDLSGNKN RSCGSSKVVH KADHSRMTIP bmy_20743T0/1-215 VDFTELVVTD NRRALANNFW SGRDLSGNKN RSCSSSKVVH KADHSKMTIL 301 350 BACU002708/1-318 LGILLSHANS MMNPIVYAYK IKKFKETYLL --ILKAYVIC QPSNSLDSST ENSP00000358730/1-347 IICILITGLG IISVISHLTK RRRSQRNRRV GNTLKPFSRV LTPKEMAPTE ENSBTAP00000046189/1-205 IICILITGLG IISIFSRLSR RRRNQRNRRG KGLTR---NQ KTSQASASPT ENSTTRP00000001460/1-347 IICMLSTGLG TISIISHLSR RRRGQMSRRV DDSLKPLSHV LTPKAMAHTE bmy_20743T0/1-215 IICMLITGLG IISIISHLSR RKRGQMSRRV DDSLKPLSHV LIPKAMAHTE 351 400 BACU002708/1-318 EQTSE---- ENSP00000358730/1-347 QM------- ENSBTAP00000046189/1-205 PL------- ENSTTRP00000001460/1-347 QMD------ bmy_20743T0/1-215 QMGLKISFI