KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:30 2014 Check: 00 .. Name: ENSBTAP00000046191/1-620 Len: 769 Check: 2947 Weight: 1.00 Name: ENSP00000308727/1-629 Len: 769 Check: 5070 Weight: 1.00 Name: ENSTTRP00000015914/1-700 Len: 769 Check: 2830 Weight: 1.00 Name: bmy_17632T0/1-406 Len: 769 Check: 1236 Weight: 1.00 Name: BACU014643/1-621 Len: 769 Check: 9728 Weight: 1.00 // 1 50 ENSBTAP00000046191/1-620 ---------- ---------- ---------- ---------- ---------- ENSP00000308727/1-629 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015914/1-700 QRVPAGGGSL QRALRSPRLH APFRSAPRHP GSSPFGSASF GTEAPRCPAR bmy_17632T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU014643/1-621 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000046191/1-620 ---------- ---------- ---------- ---------- ---------- ENSP00000308727/1-629 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015914/1-700 RRSPATAASP APSTGPPGAR PQRCGSASPA PGSPRSSLSA VRARSLRRAN bmy_17632T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU014643/1-621 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000046191/1-620 ---------- ---------- ---------- -----MAAEG PGPGAR---- ENSP00000308727/1-629 ---------- ---------- ---------- -----MTAEG PSPPARWHRR ENSTTRP00000015914/1-700 RAQHAELSGV RGAVARALPS TARARAPASP MDVRTMSAKG PGSRTR---- bmy_17632T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU014643/1-621 ---------- ---------- ---------- -----MAAKG PGSRTR---- 151 200 ENSBTAP00000046191/1-620 ---LWAAALL LLGLPRLSTP ANGKLFVLES QNGSQGLALE AARLSCRSRG ENSP00000308727/1-629 LPGLWAAALL LLGLPRLSVR ADGKFFVLES QNGSQGLQLE AARLSCKSRG ENSTTRP00000015914/1-700 ---LWAAALL LLGLPGLSLR AEGKLFVLES QNGSQGLELE AARLSCKSRG bmy_17632T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU014643/1-621 ---LWAAALL LLGLPGLSVR AEGKLFVLES QNGSQGLELE AARLSCKSRG 201 250 ENSBTAP00000046191/1-620 AHLVSADELR RVVQDCALAV CTTGWLADGT LGTTVCNERR GEQQTMRAVD ENSP00000308727/1-629 AHLASADELR RVVQDCSFAV CTTGWLADGT LGTTVCSKGS GEQQIMRAVD ENSTTRP00000015914/1-700 AHLVSADELR KVVRDCAFSV CTTGWLADGS LGTTMCSKGS GEQQIMRAVD bmy_17632T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU014643/1-621 AHLVSADELR RVVQDCAFSV CTTGWLADGS LGTTMCSKGS GEQQIMRAVD 251 300 ENSBTAP00000046191/1-620 VRVKSSPVPG GTYNALCIKD EEKPCGDPPS FPHTILQGRT GLEMGDELLY ENSP00000308727/1-629 VRIESNPVPG GTYSALCIKD EEKPCGDPPS FPHTILQGRT GLEMGDELLY ENSTTRP00000015914/1-700 VRIESNPVPG GTYNALCIKD EEKPCGDPPS FPHTILQGHT GLEMGDELLY bmy_17632T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU014643/1-621 VRIESNPVPG GTYNALCMKD EEKPCGDPPS FPHTILQGHT GLEMGDELLY 301 350 ENSBTAP00000046191/1-620 VCAPGHVTGQ RETAFTLLCD SCGEWYGLVQ ACGKDEIEKI VDHHNKYNKE ENSP00000308727/1-629 VCAPGHIMGH RETAFTLLCN SCGEWYGLVQ ACGKDEAEAH IDYEDNFPDD ENSTTRP00000015914/1-700 LCAPGHVTGR RETAFTLLCN SCGEWYGLVQ ACGKDEGEVH IDYEDNFPDD bmy_17632T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU014643/1-621 LCAPGHVTGR RETAFTLLCN SCGEWYGLVQ ACGKDGGEVH IDYEDNFPDD 351 400 ENSBTAP00000046191/1-620 NSVSTIPFLE PSRGEA---- GYAMTSEEAP KQDRLVSMPV ASEDRAQDTS ENSP00000308727/1-629 RSVSFRELME DSRTEADEDR GQGDSSEEAP KQDRLVSISV GRENIARDKV ENSTTRP00000015914/1-700 RSVSFRELME DSRTEAEEDR GQGEASEEAP EQDHLVSISV GKEDTAQDTA bmy_17632T0/1-406 --------ME DSRTEAEEDR GQGEASEEAP KQDHLVSISV EREDTAQDTA BACU014643/1-621 RSVSFRELME DSRTE--EDR GQGETSEEAP KQDHLVSISV GREDTAQDTA 401 450 ENSBTAP00000046191/1-620 FVPTTGLLGA GSPVPTELPG SQGSGKDMLW SPAGTFHKPE WEKAMDEDAK ENSP00000308727/1-629 FVPTTGLPGA GSSVPADSPG SRLLQKHLFW FPAEAFHKPG LEKEVDDDTK ENSTTRP00000015914/1-700 FAPTTGLPST GSGVPTDLPG SRQNQKYMFW F-DETFHKPE LEKEMDEDTK bmy_17632T0/1-406 FAPTTGLPST GSSVPTDLPG SRQNQKYMFW FPDETFHKPE LEKEMDEDTK BACU014643/1-621 FAPTTRLPST GSGVPTDLPG SRQNQKYMFW FPDETFHKPE LEKEMDEDTK 451 500 ENSBTAP00000046191/1-620 KHLPAGDHHR DSTLAPGEPE TKVIYHSTDG PSGPSVGRND SRAGDAMVSS ENSP00000308727/1-629 KQFSAGDNHS GVKLVPGEPE TKVIYGNTDG PSGPFVGKND SKAGDPVVSS ENSTTRP00000015914/1-700 KQFPAGDNHS GTTSAPGEPE TRVIYSSTDG PLGPFVGRND SKAGDPMVSS bmy_17632T0/1-406 KQFPAGDNHS GTTLAPGEPE TRVIYSSTDG PLGPFVGRND SKAGDPMVSS BACU014643/1-621 KQFPAGDNHS GTTLAPGEPE TRVIYSSTDG PLGPFVGRND SKAGDPMVSS 501 550 ENSBTAP00000046191/1-620 SDESWLDGYP VTDGAWRQTE AGAEEDEEEE DKGDGSVGLE ESMLITPSQP ENSP00000308727/1-629 SDESWLDGYP VTEGAWRKTE A---EEEEDG DRGDGSVGLD ENVLVTPDQP ENSTTRP00000015914/1-700 SDESWLDGYP VTDGAWRKTE A---EEEEEK DEGNRSVGLE ETVLVTPNQP bmy_17632T0/1-406 SDESWLDGYP VTDGAWRKTE A----EEEEE DKGNRSVGLE ETVLVTPNQP BACU014643/1-621 SDESWLDGYP VTDGAWRKTE A---EEEEEE DKGNRSVGLE ETVLVTPNQP 551 600 ENSBTAP00000046191/1-620 ALAERKRSRG TTLTPSEDVT --SLLPSQTL DGEALALRPT NVSETEGPSK ENSP00000308727/1-629 ILVEVKKPKS STLTPSEGMT HSSVLPSQML DVEALALRPV NASETEG--I ENSTTRP00000015914/1-700 ALVEVKKPRS TTLTLNEDTT NRSVLPTQTL DVEALALRPM SVSETESPSK bmy_17632T0/1-406 ALVEVKKPRS TTLTLSEDTT HRSVLPTQTL DVEALALRPM SVSETESPRK BACU014643/1-621 ALVEVKKPRS TTLTLSEDTT HRSVLPTQTL DVEALALRPM SVSETESPSK 601 650 ENSBTAP00000046191/1-620 GAGDLTGNQS TVPWRYATKK PPSSTLPYEL TSSTLKTET- TTVQKTPNLT ENSP00000308727/1-629 GDGDLTKYQS TLPWRFITEE SPMATLSYEL TSSTLEILTV NTVKQTPNHI ENSTTRP00000015914/1-700 GDGDLTRDQS TVPWRYATEK PPMSTLPYEL TSSILETVT- TAIHKTSNLI bmy_17632T0/1-406 GDGDLTRDQS TVPWRYATEK PPMSTLPYEL TSSILETVT- TAIQKTSNLI BACU014643/1-621 GDGDLTRDQS TVPWRYATEK PPMSTLPYEL TSSILETVT- TAIQKTSDLI 651 700 ENSBTAP00000046191/1-620 PSTVAAATQT PLETTAPAVQ DTFPYLLSED FLGQEVPGPG ASEELLPTLE ENSP00000308727/1-629 PSTIMATTQP PVETTVPEIQ DSFPYLLSED FFGQEGPGPG ASEELHPTLE ENSTTRP00000015914/1-700 PSTVTAATRT PVEITAPEVQ DTFPYLLSED FLGQEVPGPG ASEELLPTLE bmy_17632T0/1-406 PSTVMAATQT PMEITAPEVQ DTFPYLLSED FLGQEVPGPG ASEELLPTLE BACU014643/1-621 PSTVMAATQT PTEITAPEVQ DTFPYLLSED LLGQEVPGPG AIEELLPTLE 701 750 ENSBTAP00000046191/1-620 PCAGGKCPSL GRGPIIATIV TVLCLLLFLA GVGGVWGYRS CQHKSSVYKL ENSP00000308727/1-629 SCVGDGCPGL SRGPVIATIV TVLCLLLLLA GVGMVWGYRK CQHKSSVYKL ENSTTRP00000015914/1-700 SCVGDKCRSL SR-------- ---------- ---------- ---------- bmy_17632T0/1-406 PCVGDKCPSL SRGPIVATIV TVLCLLLFLA GMGAVWGYRR CQRKSSVYKL BACU014643/1-621 PCIGDKCPSL SRGPIVATIV TVLCLLLFLA GMGAVWGYRR CQRKSSVYKL 751 800 ENSBTAP00000046191/1-620 NVGQRQARHY HQQIEMEKV ENSP00000308727/1-629 NVGQRQARHY HQQIEMEKV ENSTTRP00000015914/1-700 ---------- --------- bmy_17632T0/1-406 NVGQRQVGHY HQQIEMEKF BACU014643/1-621 NVGQRQVGHY HQQIEMEKV