KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:32 2014 Check: 00 .. Name: ENSBTAP00000046330/1-454 Len: 559 Check: 9568 Weight: 1.00 Name: ENSP00000376827/1-559 Len: 559 Check: 7377 Weight: 1.00 Name: ENSTTRP00000006461/1-559 Len: 559 Check: 8706 Weight: 1.00 Name: bmy_03554T0/1-559 Len: 559 Check: 6772 Weight: 1.00 Name: BACU006263/1-516 Len: 559 Check: 4914 Weight: 1.00 // 1 50 ENSBTAP00000046330/1-454 -MQVAGRTD- ---------- ---------- ------GFL- ------PTLT ENSP00000376827/1-559 MAETVWSTDT GEAVYRSRDP VRNLRLRVHL QRITSSNFLH YQPAAELGKD ENSTTRP00000006461/1-559 MAETVWSTDT GEAVYRSWDP VRNLRLRXXX XXXXXSSYLH CQPAAQPGKD bmy_03554T0/1-559 MAEAVWSTDT GEAVYRSWDP VRNLRLRVHL QRITSSNYLH YQPAAQPGKD BACU006263/1-516 MAETVWSSDT GEAVYRSWDP VRNLRLRVHL QRITSSNYLH YQPAAQPGKD 51 100 ENSBTAP00000046330/1-454 LIDTPIWRRY HSFP------ ---------- ---------- ---------- ENSP00000376827/1-559 LIDLATFRPQ PTASGHRPEE DEEEEIVIGW QEKLFSQFEV DLYQNETACQ ENSTTRP00000006461/1-559 LIDLATFRPH PSTSGHRPEV DEEEEVVIGW QEKLFSQFEV DLYQNEAACQ bmy_03554T0/1-559 IIDLATFRPH PSASGHRPEV DEEEEVVIGW QEKLFSQFEV DLYQNEAACQ BACU006263/1-516 LIDLATFRPH PSASGHRPEV DEEEEVVIGW QEKLFSQFEV DLYQNEAACQ 101 150 ENSBTAP00000046330/1-454 ------RRQ- ---------- ---------- -------TQH CQKMTTAASE ENSP00000376827/1-559 SPLDYQYRQE ILKLENSGGK KNRRIFTYTD SDRYTNLEEH CQRMTTAASE ENSTTRP00000006461/1-559 SPLDHQYRQE ILKLEDLDGR KNRRIFTYTD SDRYTNLEEH CQKMTTAASE bmy_03554T0/1-559 SPLDHQYRQE ILKLEHLDGR KNRRIFTYTD SDRYTNLEEH CQKMTTAASE BACU006263/1-516 SPLDHQYRQE ILKLEHLDAR KNRRIFTYTD SDRYTNLEEH CQKMTTAASE 151 200 ENSBTAP00000046330/1-454 MPSFLVERMA NVRRRRQDRR GTEGGILKSR IVTWEPSEEF IRNNHVINTP ENSP00000376827/1-559 VPSFLVERMA NVRRRRQDRR GMEGGILKSR IVTWEPSEEF VRNNHVINTP ENSTTRP00000006461/1-559 MPSFLVERMA NVRRRRQDRR GMEGGILKSR IVTWEPSEEF IRNSHVINTP bmy_03554T0/1-559 MPSFLVERMA NVRRRRQDRR GMEGGILKSR IVTWEPSEEF IRNNHVINTA BACU006263/1-516 MPSFLVERMA NVRRRRQDRR GM-------- ---------- ---------- 201 250 ENSBTAP00000046330/1-454 LQTMYIMADL GPYGKLGYKK HEHVLCTLKV DSNGVITVKP DFTGSKGPYR ENSP00000376827/1-559 LQTMHIMADL GPYKKLGYKK YEHVLCTLKV DSNGVITVKP DFTGLKGPYR ENSTTRP00000006461/1-559 LQTMYIMADL GPYGKLGYKK YEHVLCTLKV DSNGVITVKP DFTGSRGPYR bmy_03554T0/1-559 LQTMYIMADL GPYGKLGYKK YEHVLCTLKV DSNGVITVKP DFTGSRGPYR BACU006263/1-516 ---------- -----LGYKK YEHVLCTLKV DSNGVITVKP DFTGSRGPYR 251 300 ENSBTAP00000046330/1-454 IETEGEKQEL WKYTVDNVSS LAQPEEEERE QRVFKDLYGR HKEYLNSLVG ENSP00000376827/1-559 IETEGEKQEL WKYTIDNVSP HAQPEEEERE RRVFKDLYGR HKEYLSSLVG ENSTTRP00000006461/1-559 IETDGEKQEL WKYTIDSVSS LAQPEEEERE QRALRDLYGR HKEYLNSLVG bmy_03554T0/1-559 IETDGEKQEL WKYTIDNVSS LAQPEEEERE QRVFKDLYGR HKEYLSSLVG BACU006263/1-516 IETDGEKQEL WKYTIDNVSS LAQPEEEERE QRVFKDLYGR HKEYLNSLVG 301 350 ENSBTAP00000046330/1-454 TDFEMTAPGA LRLFVNGEVV SAQGYEYDNL YVHFFVELPT SNWSSPAFQQ ENSP00000376827/1-559 TDFEMTVPGA LRLFVNGEVV SAQGYEYDNL YVHFFVELPT AHWSSPAFQQ ENSTTRP00000006461/1-559 TDFETTVPGA LRLFVNGEVV SAQGYEFDNL YVHFFVELPT TSWSSPAFQQ bmy_03554T0/1-559 TDFETTVPGA LRLFVNGEVV SAQGYEFDNL YVHFFVELPT TSWSSPAFQQ BACU006263/1-516 TDFETTVPGA LRLFVNGEVV SAQGYEFDNL YVHFFVELPT TSWSSPAFQQ 351 400 ENSBTAP00000046330/1-454 LSGITQTCAT KSRGMDNVAY FSYPFTFEAS FLHEDESVDA LPEWPVLYCE ENSP00000376827/1-559 LSGVTQTCTT KSLAMDKVAH FSYPFTFEAF FLHEDESSDA LPEWPVLYCE ENSTTRP00000006461/1-559 LSGITQTCAT KSLGTDNVAY FSYPFTFEAS FLHEDESAGA LPAWPVLYCE bmy_03554T0/1-559 LSGITQTCAT KSLGMDNVAY FSYPFTFEAS FLHEDESAGA LPAWPVLYCE BACU006263/1-516 LSGITQTCAT KSLGMDNVAY FSYPFTFEAS FLHEDESAGA LPAWPVLYCE 401 450 ENSBTAP00000046330/1-454 VLSLDFWQRY RVEGYGAVVL PATPGSHTLT VSTWRPLELS PVAELRRFFI ENSP00000376827/1-559 VLSLDFWQRY RVEGYGAVVL PATPGSHTLT VSTWRPVELG TVAELRRFFI ENSTTRP00000006461/1-559 VLSLDFWQRY RVEGYGAVVL PATPGSHTLT VPTWRPLELG PAAELRRFFI bmy_03554T0/1-559 VLSLDFWQRC RVEGYGAVVL PATPGSHTLT VSTWRPLELG PVAELRRVFI BACU006263/1-516 VLSLDYWQRC RVEGYGAVVL PATPGSHTLT VSTWRPLELG PVAELRRVFI 451 500 ENSBTAP00000046330/1-454 GGSLELEDLS YVWIPGTFKG ERLSRFGLRT ETTGSVTFRL HCLQQSRAFM ENSP00000376827/1-559 GGSLELEDLS YVRIPGSFKG ERLSRFGLRT ETTGTVTFRL HCLQQSRAFM ENSTTRP00000006461/1-559 GGSLELEDLS YVRIPGTFKG ERLSRFGLRT ETTGSVTFRL HCLQQSRAFM bmy_03554T0/1-559 GGSLELEDLS YVRIPATFKG ERLSRFGLRT ETTGSVTFRL HCLQQSRAFL BACU006263/1-516 GGSLELEDLS YVRVPATFKG ERLSRFGLRT ETTGSVTFRL HCLQQSRAFL 501 550 ENSBTAP00000046330/1-454 ESSSLRKRMR SVLDRLEGFS QQSSIQNVLE AFRRARRRMQ EARESLPQDL ENSP00000376827/1-559 ESSSLQKRMR SVLDRLEGFS QQSSIHNVLE AFRRARRRMQ EARESLPQDL ENSTTRP00000006461/1-559 ESSSLRKRMR SVLDRLEGFS QQSSIHNVLE AFRRARRRMQ EARESLPQDL bmy_03554T0/1-559 ESSSLRKRLR SVLDRLEGFS QQSSIHGVLE AFRRARRRMQ EARESLPQDL BACU006263/1-516 ESSSLRKRLR SVLDRLEGFS QQSSIHGVLE AFRRARRRMQ EARESLPQDL 551 600 ENSBTAP00000046330/1-454 VSPSVTSVS ENSP00000376827/1-559 VSPSGTLVS ENSTTRP00000006461/1-559 VSPSGTMVS bmy_03554T0/1-559 GSPSGATVS BACU006263/1-516 GSPSGATVS