KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:57:32 2014 Check: 00 .. Name: bmy_08569T0/1-475 Len: 603 Check: 867 Weight: 1.00 Name: ENSBTAP00000046353/1-400 Len: 603 Check: 3916 Weight: 1.00 Name: ENSP00000335557/1-408 Len: 603 Check: 1590 Weight: 1.00 Name: ENSTTRP00000005911/1-406 Len: 603 Check: 7455 Weight: 1.00 // 1 50 bmy_08569T0/1-475 MGWIGMGTIA ASITCLPFPC VDRQVDDANE NAAGRGPRAM KMLLVNILFN ENSBTAP00000046353/1-400 -----AKSFI NVFQCGNF-- ---------- ---------- ---------- ENSP00000335557/1-408 -----MASKK FAVKCGNF-- ---------- ---------- ---------- ENSTTRP00000005911/1-406 -----MASKK FAVKCGNF-- ---------- ---------- ---------- 51 100 bmy_08569T0/1-475 YCIGYLRVSA ANPSGSIISK AVLLFPLETC PFMGGQRDGG PGGQRTPVKG ENSBTAP00000046353/1-400 ---------- ---------- -AVLVDLHVL P-QGSSKD-- ---------- ENSP00000335557/1-408 ---------- ---------- -AVLVDLHIL P-QGSNKD-- ---------- ENSTTRP00000005911/1-406 ---------- ---------- -AVLVDLHIS P-RGSNKD-- ---------- 101 150 bmy_08569T0/1-475 KGLSLGNRAD DMASWKMSGS LVTRNLRSSS VIRAAVESNM RCKECRYHSI ENSBTAP00000046353/1-400 ---------- --TSWFSE-- --QKKEEVCL LLKETIDSRV K--------- ENSP00000335557/1-408 ---------- --TSWFSE-- --QKKEEVCL LLKETIDSRV Q--------- ENSTTRP00000005911/1-406 ---------- --TSWFSE-- --QKKEEVCL LLKETIDSRV K--------- 151 200 bmy_08569T0/1-475 ICYVRKCKNS EAHQGTDHCA TGSLRKVRPT ADLAPDSGRR HRATEISDSG ENSBTAP00000046353/1-400 ---------- ---------- --EYLQVR-- --------KQ HRPSD-TEFT ENSP00000335557/1-408 ---------- ---------- --EYLEVR-- --------KQ HRPSN-AEFT ENSTTRP00000005911/1-406 ---------- ---------- --EYLGVR-- --------KQ HRPSN-TEFT 201 250 bmy_08569T0/1-475 REFPDGLESP SCTREELSKE RRRIVLRAWR GRFFLAQSSG ETLCKTCRSH ENSBTAP00000046353/1-400 RSNPLSLKAG YGFNITAYFL KRGIRLRCLR G--------- ---------- ENSP00000335557/1-408 RSNPLSLK-G YGFQITAYFL KRGIRLRCIR S--------- ---------- ENSTTRP00000005911/1-406 RSNPLSLK-G YGFQITAYFL KRGIRLRCLG G--------- ---------- 251 300 bmy_08569T0/1-475 EFPFPPSGLS WGARPCFTGV LQRVINDERF EDEKHLLRVF CTTFRATPDR ENSBTAP00000046353/1-400 ---------- ---------- ---------- -SPRTELQVF PDRFVVCVSQ ENSP00000335557/1-408 ---------- ---------- ---------- -TQNAELCVF PDRFVVCVSQ ENSTTRP00000005911/1-406 ---------- ---------- ---------- -SQNAELRVF PDRFVVCVSQ 301 350 bmy_08569T0/1-475 SEKIHSFPKG ACSDPRVIVI ILGPLKATAP VSEFSLGSFC PALPSEFHTY ENSBTAP00000046353/1-400 LAFSRDLSAS QSEDL----- ---PGRALHR ASGDRTGCVE QLLPPG--AE ENSP00000335557/1-408 LAFSRDLLAS QNEDL----- ---TERVLHG VSDYFAECAE SSLPPS--AK ENSTTRP00000005911/1-406 LAFSHDLLAS QSEEL----- ---PGRALQG ASEDRAACME RPLLPG--TE 351 400 bmy_08569T0/1-475 LECSLHYQFV NRTETKRSVV SRSRSSRNSV GTSSGSVTAE VARKRGDSEA ENSBTAP00000046353/1-400 PRRNVLREIV NRTETKSSTM SGSRSNRTSV GASSHSVAAE GAWRRRGLPA ENSP00000335557/1-408 LRRNALKEIV KRTETKSSVT SKSQTRRDTV ETSSDSVIAE IARRRNDGQA ENSTTRP00000005911/1-406 LRRNALQDLV NRTETKRSIV SKSRSSRNSV GTSSDSVIAE VARKRGDSQA 401 450 bmy_08569T0/1-475 PSSPP--AAG QAKASIRAAE SHRGLPVPKL ERVHQPPPEG TSSQQKRHPG ENSBTAP00000046353/1-400 SSSPP--AMG QAEDDRKASE THQGLPALKL EKGHQAWPE- ---QQKPHPR ENSP00000335557/1-408 SSSPPSESMG QAKDSIKAAE SHWGLPVQKL EKVNQTQPED TSGQQKPHPG ENSTTRP00000005911/1-406 PSGPP--SKG QAKAYIKAAE SHRGLPVPKL EKVHQPPPEG TSSQQKPHPG 451 500 bmy_08569T0/1-475 ARLETGLLRG SPVCSCESAP PGPKQSP--- ---------- ---------- ENSBTAP00000046353/1-400 VRLQTGLLSR SLVCGCESAF PCPKQSPRGA RTPQKCRKRN PAGDADHHKR ENSP00000335557/1-408 ERLKTGLLSR SPVCSCESAS PCPKQSPRVA KTQQKRRNCS SAEDFDHHGR ENSTTRP00000005911/1-406 TRLETGLLRR SPVCSCESAF PGPKQSPRGA RAQQKRRNRG SVEDADHRKR 501 550 bmy_08569T0/1-475 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000046353/1-400 VSLRSDRLAP REIIVGKAK- ---LPGSCQL ELSDPGLLLK QDLAETASNE ENSP00000335557/1-408 VSLGSDRLVP REIIVEKSKA VRVLPAS--- ELSDPGLLLK QDLAKTTSKE ENSTTRP00000005911/1-406 ASLGSDRLVP REIIVEKSKA VKVLPTS--- ELSDPGLLLK RDLAETASNE 551 600 bmy_08569T0/1-475 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000046353/1-400 ELHVLE-LSS RHLMKNKPGQ AQ---SATNT ESLALTQGSP TKKRKGWKQL ENSP00000335557/1-408 ELHVLESLSS RHLMKNNPGQ AQQTGLATNT ERLSTIQNSP TKKRKKYER- ENSTTRP00000005911/1-406 ELHALENLSS RHLMKNKPGQ ARQTGSATNT ERLATTQGSP SKKRKKYER- 601 650 bmy_08569T0/1-475 --- ENSBTAP00000046353/1-400 LAH ENSP00000335557/1-408 -GH ENSTTRP00000005911/1-406 -GH