KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:57:36 2014 Check: 00 .. Name: ENSTTRP00000015122/1-343 Len: 416 Check: 8125 Weight: 1.00 Name: ENSP00000335500/1-295 Len: 416 Check: 6565 Weight: 1.00 Name: bmy_22236T0/1-388 Len: 416 Check: 2088 Weight: 1.00 Name: ENSBTAP00000046417/1-288 Len: 416 Check: 2416 Weight: 1.00 // 1 50 ENSTTRP00000015122/1-343 ------SAPR WEFGVGPAAR WNRVASDAAG GNHPDPRPVA ---------- ENSP00000335500/1-295 ---------- ---------- ---------- ---------- ---------- bmy_22236T0/1-388 LIVGARALPL ELIGRLRPLT LPRLAAAAPA ATAGWPRPLP RRRGLLCFRP ENSBTAP00000046417/1-288 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015122/1-343 ---------- ---------- ---------- ---------- --------TP ENSP00000335500/1-295 ---------- ---------- ---------- ---------- ---------- bmy_22236T0/1-388 ALGVWGWYQP PAGTEWPRTL QVAITQTLGL QVEEDRQSRN GDPASAAQPP ENSBTAP00000046417/1-288 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000015122/1-343 RRFLVHPRTR TAGSVLP--M RNTSKELHGA ASRYAPCDWY YHLPVKQSEK ENSP00000335500/1-295 ---------- ---------M RNTSKELQGA THRYAPCDWY YHVPVKRSEK bmy_22236T0/1-388 RRFLVHPRTE NSRPSVSPGM RNTSKELHGA TSRYAPCDWY YHLPVKRSEK ENSBTAP00000046417/1-288 ---------- ---------M RNTSKELHGA ASRYAPCDWY YHLPVKQSEK 151 200 ENSTTRP00000015122/1-343 AVDAPPASQI PGLSDLRAAP SGHTPGARRC LVKETDSEYV KLAKQGGQPD ENSP00000335500/1-295 AVDAPPASQI PGLSNLGDSH SENLPGTRRY WIKETDSEYV KLAKQGGRPD bmy_22236T0/1-388 AMDAPPVSQI PGLSDLREAP NGHTLRERRY WVKETDSEDV KLAKQGGQPD ENSBTAP00000046417/1-288 AVDAPPASQI PGLSDPREAP SGHTLGLRRY WVKETDSEYV KLAKQGGRPD 201 250 ENSTTRP00000015122/1-343 LLKHFAPGTS KGSPVAYSLP DWYVHHSQPP TADRRXXXXX XXXXXXXXXX ENSP00000335500/1-295 LLKHFAPGTR KGSPVAYSLP DWYIHHSKPP TASQQEVRAV SMPDYMVHEE bmy_22236T0/1-388 LLKHFAPGTT KGSPVAYSLP DWYVHHSQPP TADRRQVPAV SIPDYMVYEG ENSBTAP00000046417/1-288 LLKHFAPGTT KGSPVAYSLP DWYIHHSKPP TADQRQVPAV SIPDYMVYEE 251 300 ENSTTRP00000015122/1-343 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXVR LPAIKSKYPS ENSP00000335500/1-295 FNPDQANGSY ASRRGPFDFD MKTVWQREAE ELEKEKKKLR LPAIDSKYLS bmy_22236T0/1-388 SNPDHASGNY ESRRGPFDFD MKSVWQREAE ELEKEKKKVR LPAIKSKYPS ENSBTAP00000046417/1-288 FNPDQATGNF ESRMGPFDFD MKTIWQREAE ELEKEKKKVR LPAIKSKYPS 301 350 ENSTTRP00000015122/1-343 KAGTPLGPKD PAGSKLSFPP MPGQKNSSPT NVSKLISNGY NAEWL--QQQ ENSP00000335500/1-295 KAGTPLGPKN PAGSRLSFPP VPGQKNSSPT NFSKLISNGY KDEWLQQQQR bmy_22236T0/1-388 KAGTPLGPKD PAGSKLSFPP I--------- -------NGY KAEWL--QQR ENSBTAP00000046417/1-288 KVGTPLGHRE PAGSKLSFPP IPGQRPSSPT NFSKLISNGY KDEWL--QQQ 351 400 ENSTTRP00000015122/1-343 ADRDKRTLQT SKASASSLSQ SPWDAEPPPD PEALEGAK-- EGPESSPPSP ENSP00000335500/1-295 ADSDKRTPKT SRASVLSQ-- SPRDLEGPQD AARLQDAEAS EGPEDTPESS bmy_22236T0/1-388 ADPDKRTPQT SRASASSPSQ SPRDAELPPD PEAPEGAK-- EGP-----GP ENSBTAP00000046417/1-288 ADSDKRAPQT PQSSVSSP-- SPLDAEPPAD PEAPGDTT-- EAAESSPLSS 401 450 ENSTTRP00000015122/1-343 VAPP---TAS APAERR ENSP00000335500/1-295 QSPEESVSAS TPAELK bmy_22236T0/1-388 VAPP---SAS APAERR ENSBTAP00000046417/1-288 AAPP---PDS TPVELK