KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:39 2014 Check: 00 .. Name: ENSP00000356584/1-470 Len: 508 Check: 3343 Weight: 1.00 Name: ENSBTAP00000046577/1-469 Len: 508 Check: 3696 Weight: 1.00 Name: ENSTTRP00000013745/1-470 Len: 508 Check: 2441 Weight: 1.00 Name: bmy_16684T0/1-470 Len: 508 Check: 3372 Weight: 1.00 Name: BACU012845/1-501 Len: 508 Check: 4935 Weight: 1.00 // 1 50 ENSP00000356584/1-470 MADSGLREPQ EDSQKDLEND PSVNSQAQET TIIASNAEEA EILHSACGLS ENSBTAP00000046577/1-469 MTDRGLRDPP EDPQKDLEND PSLN--TQEA TVTTSTTEEA QTPDPAPGLN ENSTTRP00000013745/1-470 MTDRALRDPP EDPQKDLEND PSINCQAQET TVTASPTEEA QTPNPASGLN bmy_16684T0/1-470 MTDRGLRDPP EDPQKDLEGD PSINCQAQET TVTASTTEEA QTPNPASGLN BACU012845/1-501 MTDRGLRDPP EDPQKDLESD PSINCQAQET TVTASTTEEA QTPNPGSGLN 51 100 ENSP00000356584/1-470 KDHQEVETEG PESADTGDKS ES-------- ---------- ---------- ENSBTAP00000046577/1-469 KDHQEIETVG PGSTDTDAQS EN-------- ---------- ---------- ENSTTRP00000013745/1-470 KDHQEVESVG PGSTDTDDQS ES-------- ---------- ---------- bmy_16684T0/1-470 KDHQEVESVG PGSTDTDDQS ES-------- ---------- ---------- BACU012845/1-501 KDHQEIESVG PGSTDTDDQS EGPGSTNTDD QSECPGSTNT DDQSEIPGST 101 150 ENSP00000356584/1-470 --------PD EANVGKHPKD KTEDENKQSF LDGGKGHHLP SENLGKEPLD ENSBTAP00000046577/1-469 --------PD ETDCGKYLKD -TEGENSQSF QGGEQGHQLP SESLSEDPVD ENSTTRP00000013745/1-470 --------PD ETDDRKYPKD -TEGENSQSF QGGEQGHPLP SESLGEDLLD bmy_16684T0/1-470 --------PD ETDYXKYPKD -TEGENSQSF QGGEQGHQLP SESLGEDLLD BACU012845/1-501 NTDDQSEIPD ETDYRKYPKD -TEDENSQSF Q-----HQLP SESLGEDLLD 151 200 ENSP00000356584/1-470 PDPSHSPSDK VGRADAHLGS SSVALPKEAS DGTGASQEPP TTDSQEAQSP ENSBTAP00000046577/1-469 PETKCSPSDK VGRTDAHIVG SSAALPEHVS DGPGASQEPP VVDPQDAQSP ENSTTRP00000013745/1-470 PEPNNSPSDK VGRTDAHLVS SSAALPEHVS DRPGALQEPP VLDPQDTQSP bmy_16684T0/1-470 PEPNCSPSDK VGRTDAHLVS SSAALPEHVS DRPGALQEPP VLDPQDAQSP BACU012845/1-501 PEPNCSPSDK VGRTDTHLVS SSAALPEHVS DRPGALREPP VLDPQDAQSP 201 250 ENSP00000356584/1-470 GHSSAGQEGE DTLRRRLLAP EAGSHPQQTQ KLEEIKE-NA QDTMRQINKK ENSBTAP00000046577/1-469 GHSSAGLESQ HTLRRRLLAP ETETHQQETQ ELEENKEKNA QGTIRRIDKK ENSTTRP00000013745/1-470 GHSSAGLESQ DTLRKRLPAP EVERHQQETQ KLEGNKE-NV QDTIRKINKK bmy_16684T0/1-470 EHSSTGLESE DTLRKRLLAP EVERHQEETQ KLEGNKE-NA QDTIRRINKK BACU012845/1-501 EHPSTGLESQ DMLRKRLLVP EVERHQQETQ KLEGNKE-NA QDTIRRINKK 251 300 ENSP00000356584/1-470 GFWSYGPVIL VVLVVAVV-A SSVNSYYSSP AQQVPKNPAL EAFLAQFSQL ENSBTAP00000046577/1-469 DFLSYGSIIF CFLVLIIVLL SSVNSYYSSP AQQVPKNPAL EAFLVHFSQL ENSTTRP00000013745/1-470 DFRSYGSIFL GFLVLILVLL SSVSSYYSCP AQQVPKNPAL EAFLVHFSHL bmy_16684T0/1-470 DFLSYGSIFL GSLVLTLVLL SSVNSYYSSP AQQVPKNPAL EAFLVHFSHL BACU012845/1-501 DFLNYGSIFL GFLVLTLILL SSVNSYYSSP AQQVPKNPAL EAFLVHFSHL 301 350 ENSP00000356584/1-470 EDKFPGQSSF LWQRGRKFLQ KHLNASNPTE PATIIFTAAR EGRETLKCLS ENSBTAP00000046577/1-469 KDKFPGQSSF LWQRGRKFLQ KHLNASHPSE PATIIFTAAR EGRETLKCLS ENSTTRP00000013745/1-470 KDKFPGQSSF LWQRGRKFLQ KHLNASHPTE PATIIFTAAQ EGRETLKCLS bmy_16684T0/1-470 KDKFPGQSSF LWQRGRKFLQ KHLNASHPTE PATIIFTAAQ EGRETLKCLS BACU012845/1-501 KDKFPGQSSF LWQRGRKFLQ KHLNASHPTE PATIIFTAAR EGRETLKCLS 351 400 ENSP00000356584/1-470 HHVADAYTSS QKVSPIQIDG AGRTWQDSDT VKLLVDLELS YGFENGQKAA ENSBTAP00000046577/1-469 HHVADAYTSA QKVSAIQIDG AGKTLQDSDK VKHSVDRELS SGFEKGQKAA ENSTTRP00000013745/1-470 HHVADAYTSA QKVSAIQIDG AGKTFQDSDK VKESVDKKLS SGFEKGQKAA bmy_16684T0/1-470 HHVADAYTSA QKVSAIQIDG AGKTFQDSDK VKHSVDEELS SGFEKGQKAA BACU012845/1-501 YHVADAYTSA WKASAIQIDG AGKTFQDSDA VKESVDEELR SGFEKGQKAA 401 450 ENSP00000356584/1-470 VVHHFESFPA GSTLIFYKYC DHENAAFKDV ALVLTVLLEE ETLEASVGPR ENSBTAP00000046577/1-469 VVHHFESLPA GSTLIFYKYC DHENAAFKDV ALVLTVLLEE ETLEASVSPR ENSTTRP00000013745/1-470 VVHRFESLPA GSTLIFYKYC DHENAAFKDV ALVLTILLEE ETLEASVSPR bmy_16684T0/1-470 VVHRFESLPA GSTLIFYKYC DHENAAFKDV ALVLTILLEE ETLEASVGPR BACU012845/1-501 VVHRFESLPA GSTLIFYKYC DHENAAFKDV ALVLTILLEE ETLEASVGPR 451 500 ENSP00000356584/1-470 ETEEKVRDLL WAKFTNSDTP TSFNHMDSDK LSGLWSRISH LVLPVQPVSS ENSBTAP00000046577/1-469 ETEEKVRDLL WARFTNSNTP SSFNHMDSDK LSGLWSRISH LVLPVQPVRS ENSTTRP00000013745/1-470 ETEEKVRDLL WARFTNSNTP SSFRHMDSDK LSGLWSRISH LVLPVQPVRS bmy_16684T0/1-470 ETEEKVRDLL WARFTNSNTP SSFNHMDSDK LSGLWSRISH LVLPVQPVRS BACU012845/1-501 ETEEKVRDLL WARFTNSNTP SSFNHMDSDK LSGLWSRISH LVLPVQPVRS 501 550 ENSP00000356584/1-470 IEEQGCLF ENSBTAP00000046577/1-469 IEERGCFV ENSTTRP00000013745/1-470 IEEHGCFL bmy_16684T0/1-470 IEEQGCFL BACU012845/1-501 IEEQGCFL