KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:41 2014 Check: 00 .. Name: bmy_22144T0/1-233 Len: 273 Check: 7726 Weight: 1.00 Name: ENSP00000305069/1-271 Len: 273 Check: 3750 Weight: 1.00 Name: ENSBTAP00000046602/1-272 Len: 273 Check: 5498 Weight: 1.00 Name: BACU006575/1-262 Len: 273 Check: 5291 Weight: 1.00 Name: ENSTTRP00000012208/1-268 Len: 273 Check: 3323 Weight: 1.00 // 1 50 bmy_22144T0/1-233 ---------- GSLDLIQSIE DDPLLDTQHL PHHSLHAHFR PRFHPLPTVI ENSP00000305069/1-271 -MAAGGRMED GSLDITQSIE DDPLLDAQLL PHHSLQAHFR PRFHPLPTVI ENSBTAP00000046602/1-272 IVVIFTNLFT GSLDLIQSIE DDPLLDTQHL PHHSLHAHFR PRFHPLPTVI BACU006575/1-262 ---------- GSLDLIQSIE DDPLLDTQHL PHHSLHAHFR PRFHPLPTVI ENSTTRP00000012208/1-268 ----AGGGTG GSLDLIQSIE DDPLLDTQHL PHHSLHAHFR PRFQALPTVI 51 100 bmy_22144T0/1-233 IANLLLLIHV T--------- VLCLISILYL PSSPRSWVGA RAL--AVPLR ENSP00000305069/1-271 IVNLLWFIHL VFVVLAFLTG VLCSYPNPNE DKCPGNYTNP LKVQTVIILG ENSBTAP00000046602/1-272 IANLLLLIHL VFVILAFLTG VLCSYPNPME DKCPGNYTNP LKVQTVIILG BACU006575/1-262 IANLLLLIHI VFVILAFLTG VLCSYPNPIE DKCPGNYTNP LKVQTVIILG ENSTTRP00000012208/1-268 IANLLLLIHI VFVILAFLTG VLCSYPNPIE DKCPGNYTNP LKVQTVIILG 101 150 bmy_22144T0/1-233 GLRQW----- ---------- --RRRGIGDS APPHPAHAPT LRLL--PAGS ENSP00000305069/1-271 KVILWILHLL LECYIQYHHS KIRNRGY-NL IYRSTRHLKR LALMIQSSGN ENSBTAP00000046602/1-272 KVILWILYFL LERYIQYHHC KVRNRGY-NK IYRSTRHLKR LPLMIHSTGS BACU006575/1-262 KVILWILHFL LERYIQYHHS KVRNRGY-NK IYRSTRHLKS LALMIHSTGS ENSTTRP00000012208/1-268 KVILWILHFL LERYIQYHHS KVRNRGY-NK IYRSTRHLKS LALMIHSTGN 151 200 bmy_22144T0/1-233 TALLLLLCLQ HSFPEPSALY LDLILATLAV ELVCSLMCLL VYTVKIRKFN ENSP00000305069/1-271 TVLLLILCMQ HSFPEPGRLY LDLILAILAL ELICSLICLL IYTVKIRRFN ENSBTAP00000046602/1-272 TALLLLLCLQ HSFPEPSTWY LDLILATLAL ELICSLTCLL VYTVKIQKFN BACU006575/1-262 TALLLLLCLQ HSFPEPSALY LDLILATLAV ELVCSLTCLL VYTVKIRKFN ENSTTRP00000012208/1-268 TALLFLLCLQ HSFPEPSALY LDLILATLAV ELVCSLTCLL VYTVKIRKFN 201 250 bmy_22144T0/1-233 KAKPQPDVLE EEKIYAYPSN ITSETGFRTL SSLEEIVEKQ GDIIVYLKRH ENSP00000305069/1-271 KAKPEPDILE EEKIYAYPSN ITSETGFRTI SSLEEIVEKQ GDTIEYLKRH ENSBTAP00000046602/1-272 KAKPQPDVLE EEKIYAYSNN ITSETGFRPL SSLEELVEKQ GDIIVYLKRH BACU006575/1-262 KTKPQPDVLE EEKIYAYPNN ITSETGFRTL SSLEEIVEKQ GDIIVYLKRH ENSTTRP00000012208/1-268 KAKPQPDVLE EEKIYAYPSN ITSETGFRTL SSLEEIVEKQ GDIIVYLKRH 251 300 bmy_22144T0/1-233 NALLSQRLLT FTSSDLSSQP SGI ENSP00000305069/1-271 NALLSKRLLA LTSSDLGCQP SRT ENSBTAP00000046602/1-272 NALLSQRLLA FSSSDLGSQP SGI BACU006575/1-262 NALLSQRLLT FTSSDLSSQP SGI ENSTTRP00000012208/1-268 NALLSQRLLA FTSSDLSSQP SGI