KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:44 2014 Check: 00 .. Name: ENSP00000421169/1-534 Len: 541 Check: 9273 Weight: 1.00 Name: ENSBTAP00000046715/1-537 Len: 541 Check: 8185 Weight: 1.00 Name: ENSTTRP00000003654/1-371 Len: 541 Check: 8082 Weight: 1.00 Name: bmy_09549T0/1-532 Len: 541 Check: 6594 Weight: 1.00 Name: BACU007627/1-371 Len: 541 Check: 6530 Weight: 1.00 // 1 50 ENSP00000421169/1-534 MEEEMQPAEE GPSVPKIYKQ RSPYSVLKTF PSKRPALAKR YERPTLVELP ENSBTAP00000046715/1-537 MEEEMQPAEE GPSVPKIYKQ RGPYSVLKTF PGKRPALAKR YERPTLVELP ENSTTRP00000003654/1-371 ---------- ---------- ---------- ---------- ---------- bmy_09549T0/1-532 MEEEMQPAEE GPSVPKIYKQ RGPYSVLKTF PSKRPALAKR YERPTLVELP BACU007627/1-371 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000421169/1-534 HVRAPPPPPP PFAPHAAVSI SSSEPPP--- ---QQFQAQS SYPPGPGRAA ENSBTAP00000046715/1-537 HVR---PPPP PFAPHAVVSI SSSEPPPPPP PQQQQFQAQG SFPPGPGRAN ENSTTRP00000003654/1-371 ---------- ---------- ---------- ---------- ---------- bmy_09549T0/1-532 HVR---PPPP AFAPQAAVSI SSSEPPPPP- ---QQFQAQS SYPPGPGRAA BACU007627/1-371 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000421169/1-534 AAASSSSPSC TPATSQGHLR TPAQPPPASP AASSSSSFAA VVRYGPGA-A ENSBTAP00000046715/1-537 AAASSSSPSG TPAASQGHLR TTAAPPAAAA AASSSSSFAA VVRYGSSP-A ENSTTRP00000003654/1-371 ---------- ---------- ---------- ---------- ---------- bmy_09549T0/1-532 AAASSSSPSC TPAASQGHLR IPA-PPPAAP AASSSSSFAA VVRYGSGPAA BACU007627/1-371 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000421169/1-534 AAAGTGGTGS DSASLELSAE SRMILDAFAQ QCSRVLSLLN CGGKLLDSNH ENSBTAP00000046715/1-537 ASAGSSSTGG DGASLELSAE SRMILDAFAQ QCSRVLSLLN CGGKLLDSNH ENSTTRP00000003654/1-371 ---------- ---------- SRMILDAFAQ QCSRVLSLLN CGGKLLDSSH bmy_09549T0/1-532 AAAGSSSAGG NGASLELSAE SRMILDAFAQ QCSRVLSLLN CGGKLLDSSH BACU007627/1-371 ---------- ---------- SRMILDAFAQ QCSRVLSLLN CGGKLLDSSH 201 250 ENSP00000421169/1-534 SQSMISCVKQ EGSSYNERQE HCHIGKGVHS QTSDNVDIEM QYMQRKQQTS ENSBTAP00000046715/1-537 SQSMISCVKQ EGSSYTERQE PCPVGKGVHS QTSDNLDIEM QYMQRKQQTS ENSTTRP00000003654/1-371 SQSLISCVKQ EGSSYTERQE QCPVGKGVHS QTSDSVDIEM QYMQRKQQTS bmy_09549T0/1-532 SQSMISCVKQ EGSSYTERQE QCPVGKGVHS QTSDNVDIEM QYMQRKQQTS BACU007627/1-371 SQSMISCVKQ EGSSYAERQE QCPVGKGVHS QTSDNVDIEM QYMQRKQQTS 251 300 ENSP00000421169/1-534 AFLRVFTDSL QNYLLSGSFP TPNPSSASEY GHLADVDPLS TSPVHTLGGW ENSBTAP00000046715/1-537 AFLRVFTDSL QNYLLSGSFP TPNTSSVSEY GHLADVDPLS TSPVHTLGGW ENSTTRP00000003654/1-371 AFLRVFTDSL QNYLLSGSFP TANTSSVSEY GHLADVDPLA TSPVHTLGGW bmy_09549T0/1-532 AFLRVFTDSL QNYLLSGSFP TANTSSVSEY GHLADVDPLA TSPVHTLGGW BACU007627/1-371 AFLRVFTDSL QNYLLSGSFP TANTSSVSEY GHLADVDPLA TSPVHTLGGW 301 350 ENSP00000421169/1-534 TSPATSESHG HPSSSTLPEE EEEEDEEGYC PRCQELEQEV ISLQQENEEL ENSBTAP00000046715/1-537 TSPATSESHG HPSSSTLPEE EEEEEEEGYC PRCQELEQEV ISLQQENEEL ENSTTRP00000003654/1-371 TSPATSESHG HPSSSTLPEE EEEEEEEGYC PRCQELEQEV VSLQQENEEL bmy_09549T0/1-532 TSPATSESHG HPSSSTLPEE EEEE-EEGYC PRCQELEQEV ISLQQENEEL BACU007627/1-371 TSPATSESHG HPSSSTLPEE EEEEEEEGYC PRCQELEQEV ISLQQENEEL 351 400 ENSP00000421169/1-534 RRKLESIPVP CQTVLDYLKM VLQHHNQLLI PQPADQPTEG SKQLLNNYPV ENSBTAP00000046715/1-537 RRKLESIPVP CQTVLDYLKM VLQHHNQLMI PQPADQPTEG SKQLLNNYPV ENSTTRP00000003654/1-371 RRKLESIPVP CQTVLDYLKT LLQHYNQLVI PQPADQPAEG SKQLLNNYPV bmy_09549T0/1-532 RRKLESIPVP CQTVLDYLKT VLQHHNQLMV PQPADQPAEG SKQLLNNYPV BACU007627/1-371 RRKLESIPVP CQTVLDYLKT VLQHHNQLMI PQPADQPAEG SKQLLNNYPV 401 450 ENSP00000421169/1-534 YITSKQWDEA VNSSKKDGRR LLRYLIRFVF TTDELKYSCG LGKRKRSVQS ENSBTAP00000046715/1-537 YITSKQWDEA VNSSKKDGRR LLRYLIRFVF TTDELKYSCG LGKRKRSVQS ENSTTRP00000003654/1-371 YITSKQWDEA VNSSKKDGRR LLRYLIRFVF TTDELKYSCG LGKRKRSVQS bmy_09549T0/1-532 YITSKQWDEA VNSSKKDGRR LLRYLIRFVF TTDELKYSCG LGKRKRSVQS BACU007627/1-371 YITSKQWDEA VNSSKKDGRR LLRYLIRFVF TTDELKYSCG LGKRKRSVQS 451 500 ENSP00000421169/1-534 GETGPERRPL DPVKVTCLRE FIRMHCTSNP DWWMPSEEQI NKVFSDAVGH ENSBTAP00000046715/1-537 GETGPERRPL DPVKVTCLRE FIRMHCTSNP DWWMPSEEQI NKVFSDAVGH ENSTTRP00000003654/1-371 GETGPERRPL DPVKVTCLRE FIRMHCTSNP DWWMPSEEQI NKVFSDAVGH bmy_09549T0/1-532 GETGPERRPL DPVKVTCLRE FIRMHCTSNP DWWMPSEEQI NKVFSDAVGH BACU007627/1-371 GETGPERRPL DPVKVTCLRE FIRMHCTSNP DWWMPSEEQI NKVFSDAVGH 501 550 ENSP00000421169/1-534 ARQGRAVGTF LHNGGSFYEG IDHQASQDEV FNKSSQDGSG D ENSBTAP00000046715/1-537 ARQGRAVGTF LHNGGSFYEG IDHQPSQDEV FNKNSQDGSG D ENSTTRP00000003654/1-371 ARQGRAVGTF LHNGGSFYEG IDHQASQDEV FSKNSQDGSG D bmy_09549T0/1-532 ARQGRAVGTF LHNGGSFYEG IDHQASQDEV FSKNSQDGSG D BACU007627/1-371 ARQGRAVGTF LHNGGSFYEG IDHQASQDEV FSKNSQDGSG D