KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:45 2014 Check: 00 .. Name: ENSBTAP00000046805/1-501 Len: 527 Check: 5379 Weight: 1.00 Name: ENSP00000261835/1-500 Len: 527 Check: 8158 Weight: 1.00 Name: BACU007693/1-523 Len: 527 Check: 2817 Weight: 1.00 Name: bmy_02545T0/1-401 Len: 527 Check: 6208 Weight: 1.00 Name: ENSTTRP00000016101/1-332 Len: 527 Check: 3324 Weight: 1.00 // 1 50 ENSBTAP00000046805/1-501 MSPGLLMLLG SAVLVVF--- -GLCCTFVHR ARSRYEHIPG PPRPSFLLGH ENSP00000261835/1-500 MSPGL-LLLG SAVLLAF--- -GLCCTFVHR ARSRYEHIPG PPRPSFLLGH BACU007693/1-523 MSPGLLMLLG SAVLVVF--- -GLCCTFVHR ARSRYEHIPG PPRPSFLLGH bmy_02545T0/1-401 MSPGLLMLLG SAVLVVF--- -GLCCTFVHR ARSRYEHIPG PPRPR----- ENSTTRP00000016101/1-332 ------FLLG H--LPYFWKK DEVC------ ---------- ---------- 51 100 ENSBTAP00000046805/1-501 LPYFWKKDEV CGRVLQDVFL DWAKKYGPVV RVNVFHKTSV IVTSPESVKK ENSP00000261835/1-500 LPCFWKKDEV GGRVLQDVFL DWAKKYGPVV RVNVFHKTSV IVTSPESVKK BACU007693/1-523 LPYFWKKDEV CGRVLQDMFL DWAKKYGPVV RVNVFHKTSV IVTSPESVKK bmy_02545T0/1-401 ---------- ---------- --AKKYGPVV RVNVFHKTSV IVTSPESVKK ENSTTRP00000016101/1-332 ---------- -GRVLQDMFL DWAKKYGPVV RVNVFHKTSV IVTSPESVKK 101 150 ENSBTAP00000046805/1-501 FLMSTKYNKD SKMYHAIQTV FGERLFGQGL VSECDYERWH KQRRIMDLAF ENSP00000261835/1-500 FLMSTKYNKD SKMYRALQTV FGERLFGQGL VSECNYERWH KQRRVIDLAF BACU007693/1-523 FLMSTKYNKD SKMYHAIQTV FGERLFGQGL VSECDYERWH KQRRVMDLAF bmy_02545T0/1-401 FLMSTKYNKD SKMYHAIQTV FGE------- ---------- ---------- ENSTTRP00000016101/1-332 FLMSTKYNKD SKMYHAIQTV FGERLFGQGL VSECDYERWH KQRRVMDLAF 151 200 ENSBTAP00000046805/1-501 SRSSLVGLMG TFNEKAEQLV EILEAQADGQ TPVSMQDMLT CATMDILAKA ENSP00000261835/1-500 SRSSLVSLME TFNEKAEQLV EILEAKADGQ TPVSMQDMLT YTAMDILAKA BACU007693/1-523 SRSSLVSLME TFNEKAEQLV EILEAKADGQ TPVSMQDMLT CTTMDILAKA bmy_02545T0/1-401 --SSLVSLME TFNEKAEQLV EILEAKADGQ TPVSMQDMLT CTTMDILAKA ENSTTRP00000016101/1-332 SRS------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000046805/1-501 AFGMETSMLL GAQKPLSRKV KLILEGISAS RNTLAKGMPG DWRKSRDLQK ENSP00000261835/1-500 AFGMETSMLL GAQKPLSQAV KLMLEGITAS RNTLAKFLPG KRKQLREVRE BACU007693/1-523 AFGMETSMLL GAQKPLSRKV KLILEGISAS RNTLAKFMPG KWKQLREVRE bmy_02545T0/1-401 AFGMETSMLL GAQKPLSRKV KLILEGISAS RNTLAKFMPG KWKQLREVRE ENSTTRP00000016101/1-332 --GMEGGMLL GAQKPLSRKV KLILEGISAS RNTLAKFMPG KWKQLREVRE 251 300 ENSBTAP00000046805/1-501 SKLRLTGIGL SWVTQRRRGR QRGRGTPAAP QSQALRSPGT FEDLHIVAIY ENSP00000261835/1-500 SIRFLRQVGR DWVQRRREAL KRGEEVPADI LTQILKAEEG AQDDEGLLDN BACU007693/1-523 SVRFLRQVGK DWVQRRREAL QKGEDVPADI LTQILKAEEG AQDDEILLDN bmy_02545T0/1-401 SVRFLRQVGK DWVQRRREAL QRGEDVPADI LTQILKAEEG AQDDEILLDN ENSTTRP00000016101/1-332 SVRFLRQVGK DCVQRRREAL QRGEDVPADI LTQILKAEEG AQDDEILLDN 301 350 ENSBTAP00000046805/1-501 YITYITPGHH HSISCLCFTI LSDSKQRTMM DRLQAEVDEV IGSKRHLDCE ENSP00000261835/1-500 FVTFFIAGHE TSANHLAFTV MELSRQPEIV ARLQAEVDEV IGSKRYLDFE BACU007693/1-523 FVTFFIAGHE TSANHLAFTV MELSRQPEIL ARLQAEVDEV IGSKRHLDCE bmy_02545T0/1-401 FVTFFIAGHE TSANHLAFTV MELSRQPEIL ARLQAEVDEV IGSKRHLDCE ENSTTRP00000016101/1-332 FVTFFIAGHE TSANHLAFTV MELSRQPEIL ARLQAEVDEV IGSKRHLDCE 351 400 ENSBTAP00000046805/1-501 DLGRLQYLSQ VLKESLRLYP PAWGTFRLLE EETLIDGVRV PGNTPLL--- ENSP00000261835/1-500 DLGRLQYLSQ VLKESLRLYP PAWGTFRLLE EETLIDGVRV PGNTPLL--- BACU007693/1-523 DLGRLQYLSQ VLKESLRLYP PAWGTFRLLE EETLIDGVRV PGNTPLLQVG bmy_02545T0/1-401 DLGRLQYLSQ VLKESLRLYP PAWGTFRLLE EETLIDGVRV PGNTPLL--- ENSTTRP00000016101/1-332 DLGRLQYLSQ VLKESLRLYP PAWGTFRLLE EETLIDGIRV PGNTPLL--- 401 450 ENSBTAP00000046805/1-501 ---------- ---------F STYVMGRMDT YFEDPLTFNP DRFGPKAPKP ENSP00000261835/1-500 ---------- ---------F STYVMGRMDT YFEDPLTFNP DRFGPGAPKP BACU007693/1-523 EVRGDPSSEP ETSRSSARQF STYVMGRMDT YFEDPLTFNP DRFSPKAPKP bmy_02545T0/1-401 ---------- ---------F STYVMGRMDT YFEDPLTFNP DRFSPKAPKP ENSTTRP00000016101/1-332 ---------- ---------F STYVMGRMDT YFEDPLTFNP DRFSPKAP-- 451 500 ENSBTAP00000046805/1-501 KFTYFPFSLG PRSCIGQQFA QMEVKVVMAK LLQRLEFRLV PGQRFGLQEQ ENSP00000261835/1-500 RFTYFPFSLG HRSCIGQQFA QMEVKVVMAK LLQRLEFRLV PGQRFGLQEQ BACU007693/1-523 KFTYFPFSLG PRSCIGQQFA QMEVKVVMAK LLQRLEFRLV PGQRFRLLEQ bmy_02545T0/1-401 KFTYFPFSLG PRSCIGQQFA Q--------- ---------V GGQRWGFCPE ENSTTRP00000016101/1-332 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000046805/1-501 ATLKPLDPVL CTLQPRGWQP APPPPPC ENSP00000261835/1-500 ATLKPLDPVL CTLRPRGWQP APPPPPC BACU007693/1-523 ATLKPLDPVL CTLQPRGWQP APPPPPC bmy_02545T0/1-401 V--------- ---------- ------- ENSTTRP00000016101/1-332 ---------- ---------- -------