KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:45 2014 Check: 00 .. Name: ENSTTRP00000007210/1-382 Len: 527 Check: 4992 Weight: 1.00 Name: BACU001278/1-455 Len: 527 Check: 5438 Weight: 1.00 Name: bmy_08656T0/1-507 Len: 527 Check: 298 Weight: 1.00 Name: ENSP00000403701/1-430 Len: 527 Check: 1998 Weight: 1.00 Name: ENSBTAP00000046840/1-420 Len: 527 Check: 649 Weight: 1.00 // 1 50 ENSTTRP00000007210/1-382 ---------- ---------- --------VF KKSSPNCK-- ---------- BACU001278/1-455 MWGPDDSGTG CDAGAEEGGA GGRPRGDGVF KKSSPNCK-- ---------- bmy_08656T0/1-507 ---------- ---------M GEKP-GTRVF KKSSPNCKRS LRTCVPGTPL ENSP00000403701/1-430 ---------- ---------M GEKP-GTRVF KKSSPNCK-- ---------- ENSBTAP00000046840/1-420 ---------- ---------M GEKP-GTRVF KKSSPNCK-- ---------- 51 100 ENSTTRP00000007210/1-382 ---LTVYLGK RDFVDHLDKV DPVDGVVLVD PDYLKDRKVF VTLTCAFRNG BACU001278/1-455 ---LTVYLGK RDFVDHLDKV DPVDGVVLVD PDYLKDRRVF VTLTCAFRYG bmy_08656T0/1-507 HPQLTVYLGK RDFVDHLDKV DPVDGVVLVD PDYLKDRRVF VTLTCAFRYG ENSP00000403701/1-430 ---LTVYLGK RDFVDHLDKV DPVDGVVLVD PDYLKDRKVF VTLTCAFRYG ENSBTAP00000046840/1-420 ---LTVYLGK RDFVDHLDKV DPVDGVVLVD PDYLKDRKVF VTLTCAFRYG 101 150 ENSTTRP00000007210/1-382 CEYLNVLGLT FPEELIXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001278/1-455 REDLDVLGLS FRKDLFIANY QAFPPTPNPP RPPARLQDRL LRKLGKHAHP bmy_08656T0/1-507 REDLDVLGLS FRKDLFIANY QAFPPTPNPP RPPTRLQDRL LRKLGKHAHP ENSP00000403701/1-430 REDLDVLGLS FRKDLFIATY QAFPPVPNPP RPPTRLQDRL LRKLGQHAHP ENSBTAP00000046840/1-420 REDLDVLGLS FRKDLFIANY QAFPPTPNPP RPPTRLQERL LRKLGQHAHP 151 200 ENSTTRP00000007210/1-382 XXXX------ ---------- ---------- ---------- ---------I BACU001278/1-455 FFFT------ ---------- ---ESSSLLR LGGRFRGFLE ELNSFLLPQI bmy_08656T0/1-507 FFFTVRTPPP SAEQGVWDCV GGAESSSLLI LGGRFRGFLE ELNSFLLPQI ENSP00000403701/1-430 FFFTVRMPLP SEGQ------ -GAGAGTVSG VG-------- ---------I ENSBTAP00000046840/1-420 FFFT------ ---------- ---------- ---------- ---------I 201 250 ENSTTRP00000007210/1-382 PQNLPCSVTL QPGPEDTGKA CGVDFEIRAF CAKSLEEKSH KRNSVRLVIR BACU001278/1-455 PQNLPCSVTL QPGPEDTGKA CGVDFEIRAF CAKSLEEKSH KRNSVRLVIR bmy_08656T0/1-507 PQNLPCSVTL QPGPEDTGKA CGVDFEIRAF CAKSLEEKSH KRNSVRLVIR ENSP00000403701/1-430 PQNLPCSVTL QPGPEDTGKA CGVDFEIRAF CAKSLEEKSH KRNSVRLVIR ENSBTAP00000046840/1-420 PQNLPCSVTL QPGPEDTGKA CGVDFEIRAF CAKSLEEKSH KRNSVRLVIR 251 300 ENSTTRP00000007210/1-382 KVQFAPEKPG PQPSAETTRH FLMSDRSLHL EASLDKEXXX XXXXXXXXXX BACU001278/1-455 KVQFAPEKPG PQPSAETTRH FLMSDRSLHL EASLDKELYY HGETLNVNVH bmy_08656T0/1-507 KVQFAPEKPG PQPSAETTRH FLMSDRSLHL EASLDKELYY HGETLNVNVH ENSP00000403701/1-430 KVQFAPEKPG PQPSAETTRH FLMSDRSLHL EASLDKELYY HGEPLNVNVH ENSBTAP00000046840/1-420 KVQFAPEKPG PQPSAETTRH FLMSDRSLHL EASLDKELYY HGEPLNVNVH 301 350 ENSTTRP00000007210/1-382 XXXXXXXXXX XXXXXXRQYA DICLFSTAQY KCPVAQIEQD DQVSPSSTFC BACU001278/1-455 VTNNSTKTVK KIKVSVRQYA DICLFSTAQY KCPVAQIEQD DQVSPSSTFC bmy_08656T0/1-507 VTNNSTKTVK KIKVSVRQYA DICLFSTAQY KCPVAQIEQD DQVSPSSTFC ENSP00000403701/1-430 VTNNSTKTVK KIKVSVRQYA DICLFSTAQY KCPVAQLEQD DQVSPSSTFC ENSBTAP00000046840/1-420 VTNNSTKTVK KIKVSVRQYA DICLFSTAQY KCPVAQVEQD DQVSPSSTFC 351 400 ENSTTRP00000007210/1-382 KVYTITPLLS NNREKRGLAL DGKLKHEDTN LASSTIVKEG ANKEVLGILV BACU001278/1-455 KVYTITPLLS NNREKRGLAL DGKLKHEDTN LASSTIVKEG ANKEVLGILV bmy_08656T0/1-507 KVYTITPLLS NNREKRGLAL DGKLKHEDTN LASSTIVKEG ANKEVLGILV ENSP00000403701/1-430 KVYTITPLLS DNREKRGLAL DGKLKHEDTN LASSTIVKEG ANKEVLGILV ENSBTAP00000046840/1-420 KVYTITPLLS NNREKRGLAL DGKLKHEDTN LASSTIVKEG ANKEVLGILV 401 450 ENSTTRP00000007210/1-382 SYRVKVKLVV SRGGDVSVEL PFVLMHPKPH DHITLPRPQS ---------- BACU001278/1-455 SYRVKVKLVV SRGGDVSVEL PFVLMHPKPH DHITLPRPQS ---------- bmy_08656T0/1-507 SYRVKVKLVV SRGGDVSVEL PFVLMHPKPH DHITLPRPQS GELATRPSPA ENSP00000403701/1-430 SYRVKVKLVV SRGGDVSVEL PFVLMHPKPH DHIPLPRPQS ---------- ENSBTAP00000046840/1-420 SYRVKVKLVV SRGGDVSVEL PFVLMHPKPH DHIALPRPQS ---------- 451 500 ENSTTRP00000007210/1-382 ---------- ------ATPH PPTLLLPSAA PETDAPVDTN LIEFDT---- BACU001278/1-455 ---------- ---------- --------AA PETDAPVDTN LIEFDTNYAT bmy_08656T0/1-507 REGLKQGQWR KKPVLSATPH PPSLLLPLAA PETDAPVDTN LIEFDTNYAT ENSP00000403701/1-430 ---------- ---------- --------AA PETDVPVDTN LIEFDTNYAT ENSBTAP00000046840/1-420 ---------- -------APT HPPTLLPSAV PETDAPVDTN LIEFETNYAT 501 550 ENSTTRP00000007210/1-382 ---------- ---------- ------- BACU001278/1-455 DDDIVFEDFA RLRLKGMKDE DYDDQFC bmy_08656T0/1-507 DDDIVFEDFA RLRLKGMKDE DYDDQFC ENSP00000403701/1-430 DDDIVFEDFA RLRLKGMKDD DYDDQLC ENSBTAP00000046840/1-420 DDDIVFEDFA RLRLKGLKDE DYDDQFC