KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:48 2014 Check: 00 .. Name: ENSTTRP00000000786/1-489 Len: 552 Check: 7526 Weight: 1.00 Name: ENSP00000362010/1-488 Len: 552 Check: 859 Weight: 1.00 Name: ENSBTAP00000046882/1-463 Len: 552 Check: 103 Weight: 1.00 Name: bmy_08674T0/1-508 Len: 552 Check: 8916 Weight: 1.00 Name: BACU018414/1-480 Len: 552 Check: 9854 Weight: 1.00 // 1 50 ENSTTRP00000000786/1-489 ---------- ---------- ---------- ---MSYPGYP PTGYPAFPGY ENSP00000362010/1-488 ---------- ---------- ---------- ---MSYPGYP PTGYPPFPGY ENSBTAP00000046882/1-463 ---------- ---------- ---------- ---MSYPGYP PTGYPPFPGY bmy_08674T0/1-508 MGSPVRRSSV PRGCPEVRGS KTLVDIVPLV PLRMSYPGYP PTGYPAFPGY BACU018414/1-480 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000786/1-489 P--------- --------PA GQESSFPPPG QYSYPSGFPP VGGGAYPPTP ENSP00000362010/1-488 P--------- --------PA GQESSFPPSG QYPYPSGFPP MGGGAYPQVP ENSBTAP00000046882/1-463 P--------- --------PT GQESSFPPPG QYPYPSGFPP MGGGAYPPAP bmy_08674T0/1-508 PVLFLDDHIH LKIFLVFQPA GQESSFPPPG QYSYPSGFPP MGGGAYPPTP BACU018414/1-480 ---------- ------FQPA GQESSFPPPG QYSYPSGFPP MGGGAYPPTP 101 150 ENSTTRP00000000786/1-489 SSG------Y PGAGGYPGAG GYPAPGGYPS APQPGGAPSY PG-------V ENSP00000362010/1-488 SSG------Y PGAGGYPAPG GYPAPGGYPG APQPGGAPSY PG-------- ENSBTAP00000046882/1-463 SSG------Y PGAGGYPAPG GYPAPGGYPG APQPGGAPSY PG-------- bmy_08674T0/1-508 SSGYPGAGGY PGAGGYPGAG GYPAPGGYPS APQPGGAPSY PG-------- BACU018414/1-480 SSG------Y PGAGGYPGAG GYPAPGGYPS APQPGGAPSY PGVCFFFSLV 151 200 ENSTTRP00000000786/1-489 LPPGQGFGAP PSGAGFSGYP QAPSQSYGGG PSQVPLPGGF PGGPMPSQYP ENSP00000362010/1-488 VPPGQGFGVP PGGAGFSGYP QPPSQSYGGG PAQVPLPGGF PGGQMPSQYP ENSBTAP00000046882/1-463 ---GQGFGAP PGGAGFPGYP QPPTQSYGGG PAQVPLPGGF PGGAMPSQYP bmy_08674T0/1-508 ---GQGFGAP PSGAGFSGYP QPPSQSYGGG PAQVPLPGGF PGGPMPSQYP BACU018414/1-480 LPPGQGFGAP PSGAGFSGYP QPPSQSYGGG PAQVPLPGGF PGGPMPSQYP 201 250 ENSTTRP00000000786/1-489 GGQSPYRSQI NTESLPSYPV FSPVSVDYSS SPASMTQGTQ GTIQPAANFD ENSP00000362010/1-488 GGQPTYPSQI NTDSFSSYPV FSPVSLDYSS EPATVTQVTQ GTIRPAANFD ENSBTAP00000046882/1-463 GGQSPYPSQ- ---------- ---------- -PAPMTQGTH GTIRPAANFD bmy_08674T0/1-508 GGQSPYPSQI NTESLPSYPV FSPVSLDYSS E--------- ---------- BACU018414/1-480 GGQSPYPSQI NTESLPSYPV FSPVSLDYSS EPASMTQGTQ GTIQPAANFD 251 300 ENSTTRP00000000786/1-489 AMRDAEILRK AMKGFGTDEQ AIVDVVANRS NDQRQKIKAA FKTMYGKDLI ENSP00000362010/1-488 AIRDAEILRK AMKGFGTDEQ AIVDVVANRS NDQRQKIKAA FKTSYGKDLI ENSBTAP00000046882/1-463 AMRDAEVLRK AMKGFGTDEQ AIIDVVANRS NDQRQKIKAA FKTMYGKDLI bmy_08674T0/1-508 ---------- ----VSTDEQ AIVDVVASRS NDQRQKIKAA FKTMYGKDLI BACU018414/1-480 AMRDAEILRK AMKGFGTDEQ AIVDVVASRS NDQRQKIKAA FKTMYGKDLI 301 350 ENSTTRP00000000786/1-489 KDLKSELSGN MEELILALFM PPTYYDAWSL QNAMKGVGTQ ERVLIEILCT ENSP00000362010/1-488 KDLKSELSGN MEELILALFM PPTYYDAWSL RKAMQGAGTQ ERVLIEILCT ENSBTAP00000046882/1-463 KDLKSELSGN MEELILALFM PSTYYDAWSL RNAMKGAGTQ ERVLIEILCT bmy_08674T0/1-508 KDLKSELSGN MEELILALFM PPTYYDAWSL QNAMKGAGTQ ERVLIEILCT BACU018414/1-480 RDLKSELSGN MEELILALFM PPTYYDAWSL QNAMKGAGTQ ERVLIEILCT 351 400 ENSTTRP00000000786/1-489 RTNQEIREIV RCYQSEFGRD LEKDIRSDTS GHFERLLVSM CQGNRDENQN ENSP00000362010/1-488 RTNQEIREIV RCYQSEFGRD LEKDIRSDTS GHFERLLVSM CQGNRDENQS ENSBTAP00000046882/1-463 RTNQEIREIV RCYQSEFGRD LEKDIRSDTS GHFERLLVSM CQGNRDENQN bmy_08674T0/1-508 RTNQEIREIV RCYQSEFGRD LEKDIRSDTS GHFERLLVSM CQGNRDENQN BACU018414/1-480 RTNQEIQEIV RCYQSEFGRD LEKDIRSDTS GHFERLLVSM CQGNRDENQN 401 450 ENSTTRP00000000786/1-489 VNHQLAQEDA QRLYQAGEGK LGTDESCFNM ILATRSFPQL KATMEAYCRV ENSP00000362010/1-488 INHQMAQEDA QRLYQAGEGR LGTDESCFNM ILATRSFPQL RATMEAYSRM ENSBTAP00000046882/1-463 VNHQLAQEDA QRLYQAGEGR LGTDESCFNM ILATRSFPQL KATMEAYSRM bmy_08674T0/1-508 VNHQLAQEDA QRLYQAGEGR LGTDESCFNM ILATRSFPQL KATMEAYSRV BACU018414/1-480 VNHQLAQEDA QRLYQAGEGR LGTDESCFNM ILATRSFPQL KATMEAYSRM 451 500 ENSTTRP00000000786/1-489 ANRDLLSSVG REFSGSVESG LKTIXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000362010/1-488 ANRDLLSSVS REFSGYVESG LKTILQCALN RPAFFAERLY YAMKGAGTDD ENSBTAP00000046882/1-463 ANRDLLNSVS REFSGNVESG LKTILQCALN RPAFFAERLY YSMKGAGTDD bmy_08674T0/1-508 ANRDLLSSVG REFSGNVESG LKTILQCALN RPAFFAERLC YSMKGAGTDD BACU018414/1-480 ANRDLLSSVG REFSGNIESG LKTILQCALN RPAFFAERLY YSMKGAGTDD 501 550 ENSTTRP00000000786/1-489 XXXXXXXXXX XXIDLVQIKQ MFSQMYQKTL SKRIASDTSG DYRRLLLAIV ENSP00000362010/1-488 STLVRIVVTR SEIDLVQIKQ MFAQMYQKTL GTMIAGDTSG DYRRLLLAIV ENSBTAP00000046882/1-463 STLVRIVVTR SEIDLVQIKQ MFSQMYQKTL GTMIASDTSG DYRKLLLAIV bmy_08674T0/1-508 STLVRIVVTR SEIDLVQIKQ MFSQMYQKTL GTTIASDTSG DYRRLLLAIV BACU018414/1-480 STLVRIVVAR SEIDLVQIKQ MFSQMYQKTL GTMIASDTSG DYRRLLLAIV 551 600 ENSTTRP00000000786/1-489 GQ ENSP00000362010/1-488 GQ ENSBTAP00000046882/1-463 GQ bmy_08674T0/1-508 GQ BACU018414/1-480 GQ