KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:49 2014 Check: 00 .. Name: ENSTTRP00000010299/1-493 Len: 707 Check: 3871 Weight: 1.00 Name: ENSBTAP00000046933/1-493 Len: 707 Check: 5119 Weight: 1.00 Name: bmy_14197T0/1-394 Len: 707 Check: 9498 Weight: 1.00 Name: ENSP00000363985/1-704 Len: 707 Check: 2506 Weight: 1.00 Name: BACU019765/1-486 Len: 707 Check: 9214 Weight: 1.00 // 1 50 ENSTTRP00000010299/1-493 MDHITVPKVE NVKLLDHYVG KKPANGSLYL TATHLIYVET SGAARKETWT ENSBTAP00000046933/1-493 ---LSSNKVE NVKLLDRYVG KKPANGSLYL TATHLIYVEA SGTARKETWI bmy_14197T0/1-394 --------VE NVKLLDRYVG KKPANGSLYL TATHLIYVEA SGAARKETWI ENSP00000363985/1-704 MDHITVPKVE NVKLVDRYVS KKPANGILYL TATHLIYVEA SGAARKETWI BACU019765/1-486 -------QVE NVKLLDRYVG KKPANGSLYL TATHLIYVEA SGAARKETWI 51 100 ENSTTRP00000010299/1-493 ALHHIATVEK SSITSLGCPL ILRCKNFRVA HFVLESDVVC HEVYIPLLKL ENSBTAP00000046933/1-493 ALHHIATVEK LPVTSLGCPL ILRCKNFRVA HFVLESDIVC HEVYISLLKL bmy_14197T0/1-394 ALHHIATVEK LSITSLGCPL ILRS------ ---------- ---------- ENSP00000363985/1-704 ALHHIATVEK LPITSLGCPL TLRCKNFRVA HFVLDSDLVC HEVYISLLKL BACU019765/1-486 ALHHIATVEK LSITSLGCPL ILRCKNFRVA HFVLESDVVC HEVYISLLKL 101 150 ENSTTRP00000010299/1-493 SQPELHEDLY AFSYNPKSSK EMRENGLKLI DPISDFGRLG LPNRYWTITD ENSBTAP00000046933/1-493 SQPELPEDLY AFSYNPKFSK DMRESGWKLI DQTSDFGRMG IPNRYWTITD bmy_14197T0/1-394 ----LHEDLY AFSYNPKSSK EMRENGWKLI DPISDFGRMG LPNRYWTITD ENSP00000363985/1-704 SQPALPEDLY AFSYNPKSSK EMRESGWKLI DPISDFGRMG IPNRNWTITD BACU019765/1-486 SQPALHEDLY AFSYNPKSSK EMRENGWKLI DPISDFGRMG LPNRYWTITD 151 200 ENSTTRP00000010299/1-493 ANRNYEXXXX XXPEIVVPKS VTLGTVVGSS KFRSKECVPM LSYLYKENNP ENSBTAP00000046933/1-493 ANRNYEICST YPLEIVIPKS VTLGTVVGSS KFRSKERVPV LSYLYKENNA bmy_14197T0/1-394 ANRNYE---- ---------- ---------- ---------- ---------A ENSP00000363985/1-704 ANRNYEICST YPPEIVVPKS VTLGTVVGSS KFRSKERVPV LSYLYKENNA BACU019765/1-486 ANRNYEICST YPPEIVVPKS VTLGTVVGSS KFRSKERVPV LSYLYKENNA 201 250 ENSTTRP00000010299/1-493 AIYHCSQPLS GFYTHCIDDE LLLDVISQTN PESQFMYVVD TRPKLNAMAN ENSBTAP00000046933/1-493 AICRCSQPLS GFYTRCIDDE LLLEAIRQTN PGSQFLYVVD TRPKLNALAN bmy_14197T0/1-394 AICRCSQPLS GFYTRCIDDE LLLEAISQTN PGSQFMYVVD TRPKLNAMAN ENSP00000363985/1-704 AICRCSQPLS GFYTRCVDDE LLLEAISQTN PGSQFMYVVD TRPKLNAMAN BACU019765/1-486 AICRCSQPLS GFYTRCIDDE LLLEAISQTN PGSQFMYVVD TRPKLNAMAN 251 300 ENSTTRP00000010299/1-493 RAAGKGYENE GNYANIRFRF IGIENIHVMQ SSLQKLLEVC ELKTPTMSEF ENSBTAP00000046933/1-493 RAAGKGYENE DNYANIRFRF MSIENIHVMR SSLQKLLEVC ELKTPTMSEF bmy_14197T0/1-394 RAAGKGYEKE DNYSNIRFRF MGIENIHVMR SSLQKLLEGT GI-SPGLGQR ENSP00000363985/1-704 RAAGKGYENE DNYANIRFRF MGIENIHVMR SSLQKLLEVC ELKTPTMSEF BACU019765/1-486 RAAGKGYEKE DNYSNIRFRF MGIENIHVMR SSLQKLLEVC DLKTPTMSEF 301 350 ENSTTRP00000010299/1-493 LSSLESSGWL RHIKVIMDAG IFIAKAVKVE KTNVLVHCFD GGDHTAQVCS ENSBTAP00000046933/1-493 LSGLESSGWL RHIKAIMDAG IFIAKAVKVE KTNVLVHCSD GWDRTAQVCS bmy_14197T0/1-394 LYSLHNY--- ---------- -----AVKVE KTSVLVHCSD GWDRTAQVCS ENSP00000363985/1-704 LSGLESSGWL RHIKAIMDAG IFITKAVKVE KASVLVHCSD GWDRTAQVCS BACU019765/1-486 LSGLESSGWL RHIKAIMDAG IFIAKAVKVE KTNVLVHCSD GWDRTAQVCS 351 400 ENSTTRP00000010299/1-493 VASIFLDLFC RTFKGLM--- ILIEKEWISM GHKFSQRCGH LDGDAKEVSP ENSBTAP00000046933/1-493 VASILLDPFY RTFKGLMKIK ILIEKEWISM GHKFSQRCGH LDGDSKEVSP bmy_14197T0/1-394 VASILLDPFY RTFKGLM--- ILIEKEWISM GHKFSQRCGH LDGDSKEVSP ENSP00000363985/1-704 VASILLDPFY RTFKGLM--- ILIEKEWISM GHKFSQRCGH LDGDSKEVSP BACU019765/1-486 VASILLDPFY RTFKGLM--- ILIEKEWISM GHKFSQRCGH LDGDSKEVSP 401 450 ENSTTRP00000010299/1-493 IFTQFLDCIW QLMEQFPCAF EFNENFLLEI HDHVFSCQFR NFLGNCQKDR ENSBTAP00000046933/1-493 IFTQFLDCIW QLMEQFPCAF EFNENFLLEI HDHVFSCQFG NFLGNCQKDR bmy_14197T0/1-394 IFTQFVDCIW QLTEQFPCAF EFNENFLLEI HDHVFSCQFG NFLGNCQKDR ENSP00000363985/1-704 IFTQFLDCIW QLMEQFPCAF EFNENFLLEI HDHVFSCQFG NFLGNCQKDR BACU019765/1-486 IFTQFLDCIW QLMEQFPCAF EFNENFLLEI HDHVFSCQFG NFLGNCQKDR 451 500 ENSTTRP00000010299/1-493 EDLRIYEKTH SVWPFLVQRK PDFRNPLYIV FTVYGVLNPS TVPYNI---- ENSBTAP00000046933/1-493 DDLRIYEKTH SVWPFLVQRK PDFRNPLYKG FTMYGVLNPS TVPYNI---- bmy_14197T0/1-394 EDLRIYEKTH SVWPFLVQRK PDFRNPLYKG FTVYGVLNPS TVPYNIQ--- ENSP00000363985/1-704 EDLRVYEKTH SVWPFLVQRK PDFRNPLYKG FTMYGVLNPS TVPYNIQFWC BACU019765/1-486 EDLRIYEKTH SVWPFLVQRK PDFRNPLYKG FTVYGVLNPS TVPYNI---- 501 550 ENSTTRP00000010299/1-493 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000046933/1-493 ---------- ---------- ---------- ---------- ---------- bmy_14197T0/1-394 ---------- ---------- ---------- ---------- ---------- ENSP00000363985/1-704 GMYNRFDKGL QPKQSMLESL LEIKKQRAML ETDVHELEKK LKVRDEPPEE BACU019765/1-486 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000010299/1-493 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000046933/1-493 ---------- ---------- ---------- ---------- ---------- bmy_14197T0/1-394 ---------- ---------- ---------- ---------- ---------- ENSP00000363985/1-704 ICTCSQLGNI LSQHLGSPLT NPLGFMGING DLNTLMENGT LSREGGLRAQ BACU019765/1-486 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000010299/1-493 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000046933/1-493 ---------- ---------- ---------- ---------- ---------- bmy_14197T0/1-394 ---------- ---------- ---------- ---------- ---------- ENSP00000363985/1-704 MDQVKSQGAD LHHNCCEIVG SLRAINISGD VGISEAMGIS GDMCTFEATG BACU019765/1-486 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000010299/1-493 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000046933/1-493 ---------- ---------- ---------- ---------- ---------- bmy_14197T0/1-394 ---------- ---------- ---------- ---------- ---------- ENSP00000363985/1-704 FSKDLGICGA MDISEATGIS GNLGISEARG FSGDMGILGD TGISKASTKE BACU019765/1-486 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000010299/1-493 ------- ENSBTAP00000046933/1-493 ------- bmy_14197T0/1-394 ------- ENSP00000363985/1-704 ADYSKHQ BACU019765/1-486 -------