KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:57:50 2014 Check: 00 .. Name: ENSP00000215582/1-679 Len: 724 Check: 528 Weight: 1.00 Name: ENSBTAP00000046941/1-689 Len: 724 Check: 6453 Weight: 1.00 Name: bmy_06641T0/1-447 Len: 724 Check: 6905 Weight: 1.00 Name: ENSTTRP00000004574/1-613 Len: 724 Check: 7857 Weight: 1.00 // 1 50 ENSP00000215582/1-679 MDRVTRYPIL GIPQAHRGTG LVLDGDTSYT YHLVCMGPEA SGWGQDEPQT ENSBTAP00000046941/1-689 MDRVTRYPIF GIPHSSRMAG VAFDGDTSYT FELVGVGPTA SFWSQDETPA bmy_06641T0/1-447 MDRVTRYPIF SIPHSPRVAG MAFKGDTSYT FELVGVGSVA SDWGQDEPLA ENSTTRP00000004574/1-613 ---------- ---------- ---------- --LVDVRSVA RGWGQDEPVA 51 100 ENSP00000215582/1-679 WPTDHRAQQG VQRQGVSYSV HAYTGQPSPR GLHSENREDE GWQVYRLGAR ENSBTAP00000046941/1-689 WPTDHEASLE MTRTGTSRSL RVFPGRMAP- ---------- ---------- bmy_06641T0/1-447 WPADHEASLE MVQTGTSLSL RVFPGQLAP- ---------- ---------- ENSTTRP00000004574/1-613 WPADHEASLE MVQTGTPLSL HVFPGRLAP- ---------- ---------- 101 150 ENSP00000215582/1-679 DAHQGRPTWA LRPEDGEDKE MKTYRLDAGD ADPRRLCDLE RERWAVIQGQ ENSBTAP00000046941/1-689 --------WP PCPQDNEDEE VKAYHLEARD TPPWQPQNLE RERQAVIRGQ bmy_06641T0/1-447 --------WL PCPEDDE-EE ---------- ---------- ---------- ENSTTRP00000004574/1-613 --------QL PCPEDDE-TE MKAYHLEAGD TPPWRPRDLE WERRAVIQDQ 151 200 ENSP00000215582/1-679 AVRKSSTVAT LQGTPDHGDP RTPGPPRSTP LEENVVDREQ IDFLAARQQF ENSBTAP00000046941/1-689 AVRKGGTVAT LRGASDHREP RGPSRPQSMP LEENEIDREQ IDFLAVRQQF bmy_06641T0/1-447 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004574/1-613 AVRKSDTVAM LHGTSDHGEP RSPGRPQSTP LEENVIDTEQ IDFLAARRQF 201 250 ENSP00000215582/1-679 LSLEQAN--K GAPHSSPA-- ---------- -----RGTPA G--------- ENSBTAP00000046941/1-689 LNLEQANPPP GAAHANARVL QSPQSKVAHA KTGVSRNAPL GVAHVNSEVP bmy_06641T0/1-447 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004574/1-613 LSLEQRSSTR GGP---AR-- ---------- -----AGVPR I--------- 251 300 ENSP00000215582/1-679 ---------- -------TTP GASQAPKAFN KPHLANGHVV PIKPQVKGVV ENSBTAP00000046941/1-689 QSPQPKVAHV NAVASQNSPP RASQASKALS RPPLANGYVL PVKPQVKEVV bmy_06641T0/1-447 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004574/1-613 ---------- -------PPP GASQASKALN GPPLVNGYVV PVKPQEKEVV 301 350 ENSP00000215582/1-679 REENKVRAVP TWASVQVVDD PGSLASVESP GTPKETPIER EIRLAQEREA ENSBTAP00000046941/1-689 TEEKRVHPLP TRSVAQALED PGSRSREESP EPLKETPIER EIRLAQEREA bmy_06641T0/1-447 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004574/1-613 TEEKRVHGLP ASSGAQASDD PGSWSQEGSP EPTKETPIER EIRLAQQREA 351 400 ENSP00000215582/1-679 DLREQRGLRQ ATDHQELVEI PTRPLLTKLS LITAPRRERG RPSLYVQRDI ENSBTAP00000046941/1-689 DLREQRGLQR ATSHQELVEI PARLLLSKVS LAAAPRRDRG RPSLYVQRDI bmy_06641T0/1-447 ---------- ----GELLEI PARPLLSKVS LAVAPRPHRG RPSLYVQRDI ENSTTRP00000004574/1-613 ELREQRGLQR AASQQELLEI PARPLLSRAS PATAPRPHRG RPSLYVQRDI 401 450 ENSP00000215582/1-679 VQETQREEDH RREGLHVGRA STPDWVSEGP QPGLRRALSS DSILSPAPDA ENSBTAP00000046941/1-689 AQESQREEDH RREGLQVGRA STPDWSSEGP QPRLRRVHSS DSILSPTPDA bmy_06641T0/1-447 AQESQREEDH RRECLQVGRA STSDWFSVDP QPILRRVHSS DSILSPTPDA ENSTTRP00000004574/1-613 AQGSQREEDH RREGLQVGRA STSDWFSEGP QPILRRVHSA DSILSATPDA 451 500 ENSP00000215582/1-679 RAADPAPEVR KVNRIPPDAY QPYLSPGTPQ LEFSAFGAFG KPSSLSTAEA ENSBTAP00000046941/1-689 HAASLAPEVR KVSRIPPDAY QPYLSPGTPP GESPASHAYC RPSNLSADEA bmy_06641T0/1-447 SAASPTPEVR KVNRIPPDAY QPYLSPRMPP GESPAFHTYR KPSGLSADEA ENSTTRP00000004574/1-613 SAASPTPEVR KVNRIPPDAY QPFLSPRTPP GEPPAFHTYR KPSGLSADEA 501 550 ENSP00000215582/1-679 KAATSPKATM SPRHLSESSG KPLSTKQEAS KPPRGCPQAN RGVVRWEYFR ENSBTAP00000046941/1-689 RPVGSPKAAG SQRHPSESSA KPSGLKQE-- -PPRGPLHAS RGVLRQEYFH bmy_06641T0/1-447 RPVGSPKATG SQRHPSGSSA KPSSTKQE-- -PPXGPLRAN RGVVRWEYFR ENSTTRP00000004574/1-613 RPVGSPKATG SQRHPSGSSA KPASTKQE-- -PPQGPLCAN RGVVRWEYFR 551 600 ENSP00000215582/1-679 LRPLRFRAPD EPQQAQVPHV WGWEVAGAPA LRLQKSQSSD LLERERESVL ENSBTAP00000046941/1-689 LRPLRFRVPD EPERAEAPRV WGWEVAGAPA LRLQKSQSSE LLEREVENVL bmy_06641T0/1-447 LRPLRFRVPE EPEKAEAPRV WGWEVAGAPA LRLQKSQSSE LLEREVESVL ENSTTRP00000004574/1-613 LRPLRFGVPD EPEKAEAPRV WGWEVAGAPA LRLQKSQSSE LLEREVESVL 601 650 ENSP00000215582/1-679 RREQEVAEER RNALFPEVFS PTPDENSDQN SRSSSQASGI TGSYSVSESP ENSBTAP00000046941/1-689 RREREMAEER RSALYPEVFS ---DECCDHD SRSSSRKSSI TGSYSVSESH bmy_06641T0/1-447 RREREVAEER RSALYPEVFS PPPDECCDQD SRSSSRASGI TGSYSVSESQ ENSTTRP00000004574/1-613 RREREVADER RSALYPEVFS LPPDECCDED SRSSSRASGI TDSYSVSESH 651 700 ENSP00000215582/1-679 FFSPIHLHSN VAWTVEDPVD SAPPGQRKKE QWYAGINPSD GINSEVLEAI ENSBTAP00000046941/1-689 YFTPIHLHSD LVWTVEAPAK DALQQKKKKE QWYAGINPLD DVNSEILEAT bmy_06641T0/1-447 FFTPIHLHSG LVWTAEASAE DAPRQGKKNE QWYAGINPSD HVNSEVLEST ENSTTRP00000004574/1-613 FFTPIHLHSG LVWTAEASPE DAPRQRKKNE QWYAGLNPTD QVNSEVLEAT 701 750 ENSP00000215582/1-679 RVTRHKNAMA ERWESRIYAS EEDD ENSBTAP00000046941/1-689 RVTRHRNAMA ERWEAGIYAS EDED bmy_06641T0/1-447 RVTRHKNAMA ERWEARIYTS EDED ENSTTRP00000004574/1-613 RVTRHKNAMA ERWEAQIYAS EDED