KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:57:50 2014 Check: 00 .. Name: bmy_07921T0/1-501 Len: 628 Check: 2943 Weight: 1.00 Name: ENSTTRP00000001095/1-621 Len: 628 Check: 3638 Weight: 1.00 Name: ENSBTAP00000046955/1-559 Len: 628 Check: 2868 Weight: 1.00 Name: BACU014496/1-620 Len: 628 Check: 3560 Weight: 1.00 // 1 50 bmy_07921T0/1-501 MHKTTSQRLF PDLSYQKFKS TMEDSTILSN WTIVNKQKMK YDFSCELYRM ENSTTRP00000001095/1-621 MHKTTSQRLF PDPLYQKIKS MMEDSTILSN WTIVNKQKMK YDFSCELYRM ENSBTAP00000046955/1-559 ---------- ---------- ---------- ---------- ---------- BACU014496/1-620 MHKTTSQRLF PDLSYQKIKS TMEDSTILSN WTIVNKQKMK YDFSCELYRM 51 100 bmy_07921T0/1-501 STYSTFPVGV PVSERSLARA GFYYTGVNDK VKCFCCGLML DNWKQGDNPI ENSTTRP00000001095/1-621 STYSTFPVGV PVSERSLARA GFYYTGVNDK VKCFCCGLML DNWKQGDNPI ENSBTAP00000046955/1-559 ---------- -------XRA GFYYTGVNDK VKCFCCGLML DNWKQGDNPI BACU014496/1-620 STYSTFPAGV PVSERSLARA GFYYTGVNDK VKCFCCGLML DNWKQGDNPI 101 150 bmy_07921T0/1-501 EKHKQLYPSC SFIQNLVSVT SLESTSKNVS SPVRNSFTHS LLPTLEHSSS ENSTTRP00000001095/1-621 EKHKQLYPSC SFIQNLVSVT SLESTSKNVS SSVRNNFTHS LLPTLEHSSS ENSBTAP00000046955/1-559 EKHKQLYPSC SFIQNLVSVT SLESTSKNAS SPMRNSFTHS LSPTLEHGRS BACU014496/1-620 EKHKQLYPSC SFIQNLVSVT SLESTSKNVS SPVRNSFTHS LLPTLEHSSS 151 200 bmy_07921T0/1-501 FSGCYSNLSP NPVNSRAVED FSPMRTNPYS YAMSTEEARF LTYQMWPLSF ENSTTRP00000001095/1-621 FSGSYSNLSP NPVNSRAVED FSPMRTNPYS YAMSTEEARF LTYQMWPLTF ENSBTAP00000046955/1-559 FSGSYSNLSP NPINSRAVED FSPLRTNPYS YAMSTEEARF LTYQMWPLTF BACU014496/1-620 FSGSYSNLSP NPVNSRAVED FSPMRTNPYS YAMSTEEARF LTYQMWPLTF 201 250 bmy_07921T0/1-501 LSPSELARAG FYYIGPGDRV ACFACGGTLS NWEPRDDAMS EHRRHFPNCP ENSTTRP00000001095/1-621 LSPSELARAG FYYIGPGDRV ACFACGGTLS NWEPKDDAVS EHRRHFPNCP ENSBTAP00000046955/1-559 LSPSELARAG FYYIGPGDRV ACFACGGTLN NWEPKDDAML EHQKHFPSCP BACU014496/1-620 LSPSELARAG FYYIGPGDRV ACFACGGTLS NWEPKDDAMS EHRRHFPNCP 251 300 bmy_07921T0/1-501 FLENSLETLR FNISNLSMQT HAARLRTFMY WPSTVPVQPE QLASAGFYYV ENSTTRP00000001095/1-621 FLENSLETLR FSISNLSMQT HAARLRTFMY WPSTVPVQPE QLASAGFYYV ENSBTAP00000046955/1-559 FLENSLETLR FSISNLSMQT HAARLRTFMY WPSTVSVQPE QLASAGFYYV BACU014496/1-620 FLENSLETLR FNISNLSMQT HAARLRTFMY WPSTVPVQPE QLASAGFYYV 301 350 bmy_07921T0/1-501 GRSDDVKCFC CDGGLRCWET GDDPWVEHAK WFPRCEFLIR MKGQEFVDEI ENSTTRP00000001095/1-621 GRNDDVKCFC CDGGLRCWES GDDPWVEHAK WFPXXXXXXX XXXXXXXXXX ENSBTAP00000046955/1-559 GRNDDVKCFC CDGGLRCWES GDDPWVEHAK WFPRCEFLIR MKGQEFVSEI BACU014496/1-620 GRSDDVKCFC CDGGLRCWES GDDPWVEHAK WFPRCEFLIR MKGQEFVDEI 351 400 bmy_07921T0/1-501 QARYPHLLEQ LLSTSDTPXD ENADPP---- ---------- ---------- ENSTTRP00000001095/1-621 XXXXPHLLEQ LLSTSDTPGD ENADPP---I VHFGPGESSS DDAVIMNTPV ENSBTAP00000046955/1-559 QARYPHLLEQ LLSTANTSGD ENADPPSIIV VHFGPGESSS DDAVMMNTPV BACU014496/1-620 QARYPHLLEQ LLSTSDTPGD ENADPP---I VHFGPGESSS NDAVMMNTPV 401 450 bmy_07921T0/1-501 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001095/1-621 VKAALEMGFS RSLVKQTIQS KILTTGENYR TVNDIVSALL NAEDEKR--- ENSBTAP00000046955/1-559 VKAALEMGFS RSLVKRTVQS KILTTGENYK TVNDIVSALL NAEDEKREEE BACU014496/1-620 VKAALEMGFS RSLVKQTIQS KILTTGENYR TVNDIVSALL NAEDENR--- 451 500 bmy_07921T0/1-501 ---------- ----NDLSLI RRNRMALFQQ LTCVLPILDN LLKANVINKQ ENSTTRP00000001095/1-621 -EEEKERQTE ETASDDLSLI RRNRMALFQQ LTCVLPILDN LLKANVINKQ ENSBTAP00000046955/1-559 KEEEKERQTE ETASDDLSLL RRNRMALFQQ LTCVLPILDN LLKANVINKQ BACU014496/1-620 -EEEKERQTE ETASDDLSLI RRNRMALFQQ LTCVLPILNN LLKANVINKQ 501 550 bmy_07921T0/1-501 EHDIIKQKTQ IPLQARELID TVLVKGNGAA NIFKNCLKEI DSTLYKNLFV ENSTTRP00000001095/1-621 EHDIIKQKTQ IPLQARELID TILVKGNGAA NIFKNCLQEI DSTLYKNLFV ENSBTAP00000046955/1-559 EHDIIKQKTQ IPLQARELID TVLVKGNSAA SIFKNCLKEI DPTLYKNLFV BACU014496/1-620 EHDIIKQKTQ IPLQARELID TVLVKGNGAA NIFKNCLKEI DSTLYKNLFV 551 600 bmy_07921T0/1-501 EKNMKYIPTE DVSG---KTK LR-------- ---------- ---------- ENSTTRP00000001095/1-621 EKNMKYIPTE DVSGLSLEEQ LRRLQEERTC KVCMDKEVSI VFIPCGHLVV ENSBTAP00000046955/1-559 EKNMKYIPT- DVSGLSLEEQ LRRLQEERTC KVCMDKEVSI VFIPCGHLVV BACU014496/1-620 EKNMKYIPTE DVSGLSLEEQ LRRLQEERTC KVCMDKEVSI VFIPCGHLVV 601 650 bmy_07921T0/1-501 ---LTTNMKY YPFI--FFNG SFCCY--- ENSTTRP00000001095/1-621 CQECAPSLRK CPICRGIIKG TVRTFLSK ENSBTAP00000046955/1-559 CQECAPSLRK CPICRGIIKG TVRTFLS- BACU014496/1-620 CQECAPSLRK CPICRGIIKG TVRTFLS-