KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:56 2014 Check: 00 .. Name: ENSP00000205557/1-1503 Len: 1592 Check: 4001 Weight: 1.00 Name: ENSBTAP00000047017/1-1504 Len: 1592 Check: 2996 Weight: 1.00 Name: bmy_05438T0/1-1339 Len: 1592 Check: 5846 Weight: 1.00 Name: BACU012926/1-979 Len: 1592 Check: 2150 Weight: 1.00 Name: ENSTTRP00000009767/1-1503 Len: 1592 Check: 6403 Weight: 1.00 // 1 50 ENSP00000205557/1-1503 --MAAPAEPC A-GQGVWNQT EPEPAATSLL SLCFLRTAGV WVPPMYLWVL ENSBTAP00000047017/1-1504 --MAGQGEPC A-GPGVWNQT EPEPAAARLL SLCFLKTAGV WVPPMYLWVL bmy_05438T0/1-1339 MLQCPIQSHC PIGPGV---- ---------- ---TVQLAAI FLPP------ BACU012926/1-979 --MAAPGEPC A-GPEVWNQT EPQPAAARLL SLCFLKTAGV WVPPMYLWVL ENSTTRP00000009767/1-1503 --MAAPGEPC A-GPEVWNQT EPQPAADRLL SLCFLKTAGV WVPPMYLWVL 51 100 ENSP00000205557/1-1503 GPIYLLFIHH HGRGYLRMSP LFKAKMVLGF ALIVLCTSSV AVALWKIQQG ENSBTAP00000047017/1-1504 GPIHLLYIHR HDKGYIQMSR LFKAKMVLGF ALIILCTSSV SVTLWRIQQG bmy_05438T0/1-1339 ---------- HPQPY---PN LFPQ--VLGF ALIILCTSSV SVTLWRIRQG BACU012926/1-979 GPIHLLYIHR HDKGYLQMSR LFKAKMVLGF ALIILCTSSV SVTLWRIRQG ENSTTRP00000009767/1-1503 GPIYLLYIHR HDKGYLQMSH LFKAKMVLGF ALIILCTSSV SVTLWRIQQG 101 150 ENSP00000205557/1-1503 TPEAPEFLIH PTVWLTTM-- ---------- ---------- ---------- ENSBTAP00000047017/1-1504 TPQALEFLIH PTVWLTTM-- ---------- ---------- ---------- bmy_05438T0/1-1339 TPQALEFLIH PTVWLTTMVN DIPRPAGLFL AAAFPALVEG MGQSGAPSLP BACU012926/1-979 TPQALEFLIH PTVWLTTV-- ---------- ---------- ---------- ENSTTRP00000009767/1-1503 TPQALEFLIH PTVWLTTM-- ---------- ---------- ---------- 151 200 ENSP00000205557/1-1503 ---------- ---------S FAVFLIHTER KKGVQSSGVL FGYWLLCFVL ENSBTAP00000047017/1-1504 ---------- ---------S FAVFLIHAER KKGVQASGVL FGYWLLCFLF bmy_05438T0/1-1339 SLPPPFPASV HLPPDSLVQS FAMFLIHAER KKGVQASGVL FGYWLLCFLF BACU012926/1-979 ---------- ---------S FAMFLIHAER KKGVQASGVL FGYWLLCLLF ENSTTRP00000009767/1-1503 ---------- ---------S FAVFLIHTER KMGVQASGVL -GYWLLCFLF 201 250 ENSP00000205557/1-1503 PATNAAQQAS GAGFQSDPVR HLSTYLCLSL VVAQFVLSCL ADQPPFFPED ENSBTAP00000047017/1-1504 PATSATQQAS RGDFQSDPFR HLSPYLYLSL VMAQFALSCL ADQCPLFRKR bmy_05438T0/1-1339 PATSTAQQAS QGDFQSDPFR HLSTYLYLSL VVAEFALSCF ADQPPFFPKR BACU012926/1-979 PATSTAQQAS QGDFQSDPFR HLSTYLYLSL VVAEFALSCF ADQPPFFPKR ENSTTRP00000009767/1-1503 PATSTAQQAS QGDFQSDPFR HLSTYLYLSL VVAEFVLSCF ADQPPFFPKS 251 300 ENSP00000205557/1-1503 PQQSNPCPET GAAFPSKATF WWVSGLVWRG YRRPLRPKDL WSLGRENSSE ENSBTAP00000047017/1-1504 PPQANPCPKA GASFPSKAMF WWVSGLVWKG YRRPLGPKDL WSLGSKNSSE bmy_05438T0/1-1339 PPQPNPCPKA GASFPSKAMF WWVSGLVWRG YWRPLGPKDL WSLGRENSSE BACU012926/1-979 PPQPNPCPKA GASFPSKAMF WWVSG----- ---------- ---------- ENSTTRP00000009767/1-1503 PPQPNPCPKA GASFPSKAMF WWVSGLVWRG YWRPLGPKDL WSLARENSSK 301 350 ENSP00000205557/1-1503 ELVSRLEKEW MRNRSAARRH NKAIAFKRKG GSGMKAPETE PFLRQEGSQW ENSBTAP00000047017/1-1504 ELVSQLEKEW TRNRSATQRH TKATAFKRKG SHNKEAPETE TLLPQQRGKR bmy_05438T0/1-1339 ELVSQLEKEW TRNCSAAQR- ---------- ---------- ---------- BACU012926/1-979 ---------- ---------H TKATAFKRKG NHGVETPEME TLLQQQGGKR ENSTTRP00000009767/1-1503 ELVSQLEKEW TRNCSAAQRH TKATAFKRKG NRGAETPETE TLLQQQGGKR 351 400 ENSP00000205557/1-1503 RPLLKAIWQV FHSTFLLGTL SLIISDVFRF TVPKLLSLFL EFIGDPKPPA ENSBTAP00000047017/1-1504 GPLLRAIWQV GRSAFLLGTL SLIVSDVFRF TVPKLLSLFL EFIGDPNTPA bmy_05438T0/1-1339 ---------- ---------- ---------- -------LFL EFTGDPKTPA BACU012926/1-979 GPLLRAIWQV GRSTFLLGTL SLIISDVFRF TVPKLLSLFL EFIGDPKTPA ENSTTRP00000009767/1-1503 GPLLRAIWQV GRSTFLLGTL SLIISDVFRF TVPKLLSLFL EFIGDPKTPA 401 450 ENSP00000205557/1-1503 WKGYLLAVLM FLSACLQTLF EQQNMYRLKV LQMRLRSAIT GLVYRKVLAL ENSBTAP00000047017/1-1504 WKGYLLAVLM FLSACLQTLF EQQHMYRLKV LQLRLRTAII GLVYRKVLAL bmy_05438T0/1-1339 WQGYLLAMLM FLSACLQTLF EQQHMYRLKV LQMRLRIAIT GLVYRKVLAL BACU012926/1-979 WKGYLLAMLM FLSACLQTLF EQQHMYRLKV LQMRLRIAIT GLVYRKVLAL ENSTTRP00000009767/1-1503 WKGYLLAVLM FLSACLQTLF EQQHMYRLKV LQMRLRMAIT GLVYRKVLAL 451 500 ENSP00000205557/1-1503 SSGSRKASAV GDVVNLVSVD VQRLTESVLY LNGLWLPLVW IVVCFVYLWQ ENSBTAP00000047017/1-1504 SSSSRKSSAV GDVVNLVSVD VQRLTESVTY LNGLWLPLIW IVVCFVYLWQ bmy_05438T0/1-1339 SSSSRKASAV GDVVNLVSVD VQRLSESITY LNGLWLPLIW IVICFLYLWQ BACU012926/1-979 SSSSRKASAV GDVVNLVSVD VQRLTESITY LNGLWLPLIW IVICFLYLWQ ENSTTRP00000009767/1-1503 SSSSRKASAV GDVVNLVSVD VQRLTESITY LNGLWLPLIW IIICFLYLWQ 501 550 ENSP00000205557/1-1503 L--------- --LGPSALTA IAVFLSLL-- --PLNFFISK KRN------- ENSBTAP00000047017/1-1504 L--------- --LGPSALTA IAVFVSLL-- --PLNFFITK KRN------- bmy_05438T0/1-1339 LGFWNCLVTS CPLSPASRTL CPHRHRCLPE PPPSEFLXHQ EEEPPSGLAF BACU012926/1-979 L--------- --LGPSALTA IAVFLSLL-- --PLNFFITK KRN------- ENSTTRP00000009767/1-1503 L--------- --LGPSALTA IAVFLSLL-- --PLNFFITK KRN------- 551 600 ENSP00000205557/1-1503 ---------- --HHQEEQMR QKDSRARLTS SILRNSKTIK FHGWEGAFLD ENSBTAP00000047017/1-1504 ---------- --HHQQEQMR QKDCRARLTS CILRNVRTVK YHGWEGAFLD bmy_05438T0/1-1339 GRRDSPGRKG AGSLQEEQMR QKDSRARLTS CILRNVRTVK YHGWEGAFLD BACU012926/1-979 ---------- --HHQEEQMR QKDSRARLTS CILRNVRTVK YHGWEGAFLD ENSTTRP00000009767/1-1503 ---------- --HHQEEQMR KKDSRARLTN CILRNVRTVK YHGWEGAFLD 601 650 ENSP00000205557/1-1503 RVLGIRGQEL GALRTSGLLF SVSLVSFQVS TFLVALVVFA VHTLVA-ENA ENSBTAP00000047017/1-1504 RVLHIRAQEL GALKTSSLLF SVSLVSFQVS TFLVALVVFA VHTLVAEENA bmy_05438T0/1-1339 RVLRIRAQEL GALRTSSLLF SVSLVSFQVS TFLVALVVFA IHTLVAEENA BACU012926/1-979 RVLRIRAQEL GALRTSSLLF SVSLVSFQVS TFLVALVVFA IHTLVAEENA ENSTTRP00000009767/1-1503 RVLSIRAQEL GALRTSSLLF SVSLVSFQVS TFLVALVVFA VHTLVAEENA 651 700 ENSP00000205557/1-1503 MNAEKAFVTL TVLNILNKAQ AFLPFSIHSL VQARVSFDRL VTFLCLEEVD ENSBTAP00000047017/1-1504 MDAEKAFVTL TVLNILNKAQ AFLPFSIHSI VQARVSFDRL AAFLSLEETD bmy_05438T0/1-1339 MDAEKAFVTL TVLNILNKAQ AFLPFSIHSV VQVPVSL--- ---------- BACU012926/1-979 MDAEKAFVTL TVLNILNKAQ AFLPFSIHSV VQARVSFDRL AAFLCLEEID ENSTTRP00000009767/1-1503 MDAEKAFVTL TVLNILNKAQ AFLPFSIHSV VQARVSFDRL AAFLCLEEID 701 750 ENSP00000205557/1-1503 PGVVDSSSSG SAAGKDCITI HSATFAWSQE SPPCLHRINL TVPQGCLLAV ENSBTAP00000047017/1-1504 PGAVDSSPSR CAAGEDCISI QEGTFTWSQE SAPCLRRINL TVPQGCLLAV bmy_05438T0/1-1339 ---------- ---------- ---------- ---------- ---------- BACU012926/1-979 PEAVDS---- ---------- ---------- ------RINL TVPQGCLLAV ENSTTRP00000009767/1-1503 PEAVDSRSCR CATGEDYIRI QEGTFAWSQE SPPCLHRINL TVPQGCLLAV 751 800 ENSP00000205557/1-1503 VGPVGAGKSS LLSALLGELS KVEGFVSIEG AVAYVPQEAW VQNTSVVENV ENSBTAP00000047017/1-1504 VGPVGAGKSS LLSALLGELS KVEGSVSIKG PVAYVPQEAW VQNMSVVDNV bmy_05438T0/1-1339 ---------- ---------- ---------- ---------- ---------- BACU012926/1-979 VGPVGAGKSS LLSALLGELS KVEGSVSIKG PVAYVPQEAW VQNMSVVDNV ENSTTRP00000009767/1-1503 VGPVGAGKSS LLSALLGELS KVEGSVSIKG PVAYVPQEAW VQNMSVVDNV 801 850 ENSP00000205557/1-1503 CFGQELDPPW LERVLEACAL QPDVDSFPEG IHTSIGEQGM NLSGGQKQRL ENSBTAP00000047017/1-1504 CFGQELDAPW LETVLEACAL WPDVDGFPAG VHTRTGEQGM NLSGGQKQRL bmy_05438T0/1-1339 ---------- ---------L WP-------- -------QGM NLSGGQKQRL BACU012926/1-979 CFGQELDLPW LERVLEACAL WPDVGSFPAG VHTQTGEQGM NLSGGQKQRL ENSTTRP00000009767/1-1503 CFGQELDLPW LERVLEACAL WPDVGSFPAG VHTQTGEQGM NLSGGQKQRL 851 900 ENSP00000205557/1-1503 SLARAVYRKA AVYLLDDPLA ALDAHVGQHV FNQVIGPGGL LQGTTRILVT ENSBTAP00000047017/1-1504 SLARAVYRKA AVYLLDDPLA ALDAQVGQHV FNRVIGPDGL LQGTTRILVT bmy_05438T0/1-1339 SLARAVYRKA AVYLLDDPLA ALDAHVGQHV FNQVIGPDGL LQGTTRILVT BACU012926/1-979 SLARAVYRKA AVYLLDDPLA ALDAHVGQHV FNQVIGPDGL LQGTTRILVT ENSTTRP00000009767/1-1503 SLARAVYRKA AVYLLDDPLA ALDAHVGQHV FKQVIGPDGL LQGTTRILVT 901 950 ENSP00000205557/1-1503 HALHILPQAD WIIVLANGAI AEMGSYQELL QRKGALMCLL DQARQPGDRG ENSBTAP00000047017/1-1504 HALHILPQAD WIVVLEDGAI AEMGSFQELL HRKGALVGLL DGASQPGDGG bmy_05438T0/1-1339 HALHVLPQAD WIVVLEDGAI AEMGSFQELL HRKGTLAGLL DGARQPGDGG BACU012926/1-979 HALHVLPQAD WIVVLEDGAI AEMGSFQELL HRKGTLAGLL DGARQPGDGG ENSTTRP00000009767/1-1503 HALHVLPQAD WIVVLEDGAI AEMGSFQELL HRKGTLAGLL DGARQPGDGG 951 1000 ENSP00000205557/1-1503 EGETEPGTST KDPRGTSAGR RPELRRERSI KSVPEKDRTT SEAQTEVPLD ENSBTAP00000047017/1-1504 EGDTEPPAGA KDPRGSAAGG RPEGRSERFM KLVPEKDSAA SEAQTGLPLD bmy_05438T0/1-1339 EGEAEPPASA KDRRGSAGGA RPEGGPERSM KLVPXKDSAT SEAQTAVPLD BACU012926/1-979 EGEAEPPASA KDRRGSAGGG RPEGGPERSM KLVPEKDSAT SEAQTAVPLD ENSTTRP00000009767/1-1503 EGETEPPASA KDRRGSAGGG RPEGGPERSM KLVPEKDSAT SEAQRGVPLD 1001 1050 ENSP00000205557/1-1503 DPDRAGWPAG KDSIQYGRVK ATVHLAYLRA VGTPLCLYAL FLFLCQQVAS ENSBTAP00000047017/1-1504 DPEGPGQPKG KDGTQYGRVK ATMYLTYLRA VGTPLCLYAL FLFLCQQVAS bmy_05438T0/1-1339 DPEGAGQPKG EDSMQYGRVK ATMYLTYLRA VGTPLCLHAL FLFLCQQVAS BACU012926/1-979 DPEGAGQPKG EDSMQYGRVK ATMYLTYLRA VGTPLCLHAL FLFFCQQVAS ENSTTRP00000009767/1-1503 DPEGAGQPKG EDSMQYGRVK ATMYLTYLRA VGTPLCLHAL FLFLCQQVAS 1051 1100 ENSP00000205557/1-1503 FCRGYWLSLW ADDPAVGGQQ TQAALRGGIF GLLGCLQAIG LFASMAAVLL ENSBTAP00000047017/1-1504 FCRGYWLSLW ADDPIVDGQQ THVALRGWVF GLLGCLQAIG LFASMATVLL bmy_05438T0/1-1339 FCRGYWLSLW ADDPTVDGRQ THAALRGWVF GLLGCLQAIG LFASMATVLL BACU012926/1-979 FCRGYWLSLW ADDPTVDGRQ THAALRGWVF GLLGCLQAIG LFASMATVLL ENSTTRP00000009767/1-1503 FCRGYWLSLW ADDPTVDGRQ THAALRGWVF GLLGCLQAIG LFASMATVLL 1101 1150 ENSP00000205557/1-1503 GGARASRLLF QRLLWDVVRS PISFFERTPI GHLLNRFSKE TDTVDVDIPD ENSBTAP00000047017/1-1504 GGIRASSLLF RGLLWDVARS PIGFFERTPV GNLLNRFSKE TDIVDVDIPD bmy_05438T0/1-1339 GGIRASSLLF RGLLWDVAQS PIGFFERTPI GNLLNRFSKE TDIVDVDIPD BACU012926/1-979 GGIRASSLLF RGLLWDVAQS PIGFFERTPI GNXXASPKRQ T--------- ENSTTRP00000009767/1-1503 GGIRASSLLF RGLLWDVAQS PIGFFERTPI GNLLNRFSKE TDIVDVDIPD 1151 1200 ENSP00000205557/1-1503 KLRSLLMYAF GLLEVSLVVA VATPLATVAI LPLFLLYAGF QSLYVVSSCQ ENSBTAP00000047017/1-1504 KLRSLLMYAF GLLEVGLVVT VTTPLAVVAI LPLLLLYAGF QSLYVASSCQ bmy_05438T0/1-1339 KVRSLLMYAF GLLEVGLVVT VTTPLAVVAI LPLLLLYAGF QSLYVASSCQ BACU012926/1-979 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009767/1-1503 KFRSLLMYAF GLLEVGLVVT VTTPLAVVAI VPLLLFYAGF QSLYVASSCQ 1201 1250 ENSP00000205557/1-1503 LRRLESASYS SVCSHMAETF QGSTVVRAFR TQAPFVAQNN ARVDESQRIS ENSBTAP00000047017/1-1504 LRRLESARYS YVCSHVAETF QGGPVVRAFR VQGPFTAQND AHVDESQRVS bmy_05438T0/1-1339 LRRLESARYS SVCSHVAETF QGGAVVRAFR VQGRFVAQND AHMDESQRVS BACU012926/1-979 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009767/1-1503 LRRLESARYS SVCSHVAETF QGGAVVRAFR VQGCFVAQND AHMDESQRVS 1251 1300 ENSP00000205557/1-1503 FPRLVADRWL AANVELLGNG LVFAAATCAV LSKAHLSAGL VGFSVSAALQ ENSBTAP00000047017/1-1504 FPRLVADRWL AANLELVGNG LVFVAALCAV LSKAHLSPGL VGFSVSAALQ bmy_05438T0/1-1339 FPRLVADRWL ASNLELVGNG LVFAAALCAV LSKAHLSPGL VGFSVSAALQ BACU012926/1-979 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009767/1-1503 FPRLVADRWL ASNLELVGNG LVFAAALCAV LSKAHLSPGL VGFSVSAALQ 1301 1350 ENSP00000205557/1-1503 VTQTLQWVVR NWTDLENSIV SVERMQDYAW TPKEAPWRLP TCAAQPPWPQ ENSBTAP00000047017/1-1504 VTQMLQWAVR SWTDLESSIV SVERLKDYAQ TPKEAPWKPL TCAAHPPWPR bmy_05438T0/1-1339 VTQTLQWAVR SWTDLESSIV SVERLKDYAQ TPKEAPWRPA TCAARPPWPR BACU012926/1-979 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009767/1-1503 VTQTLQWAVR SWTDLESSIV SVERLKDYAQ TPKEAPWRPA TCAARPPWPR 1351 1400 ENSP00000205557/1-1503 GGQIEFRDFG LRYRPELPLA VQGVSFKIHA GEKVGIVGRT GAGKSSLASG ENSBTAP00000047017/1-1504 RGQIEFRDLG LRYRPELPLA VRGVSFKINA GEKVGIVGRT GAGKSSLAGG bmy_05438T0/1-1339 GGQIEFRDFG LRYRPELPLA VRGVSFKIHA GEKVGIVGRT GAGKSSLAGG BACU012926/1-979 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009767/1-1503 GGQIEFRDFG LRYRPELPLA VRGVSFKIHA GEKVGIVGRT GAGKSSLAGG 1401 1450 ENSP00000205557/1-1503 LLRLQEAAEG GIWIDGVPIA HVGLHTLRSR ISIIPQDPIL FPGSLRMNLD ENSBTAP00000047017/1-1504 LLRLVEAAEG GIWIDGVPIA QVGLHTLRSR VTIIPQDPIL FPGSLRMNLD bmy_05438T0/1-1339 LLRLLEAAEG GIWIDGVPIA QVGLHTLRSR ITIIPQDPIL FPGSLRMNLD BACU012926/1-979 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009767/1-1503 LLRLLEAAEG GIWIDGVPIA QVGLHTLRSR ITIIPQDPIL FPGSLRMNLD 1451 1500 ENSP00000205557/1-1503 LLQEHSDEAI WAALETVQLK ALVASLPGQL QYKCADRGED LSVGQKQLLC ENSBTAP00000047017/1-1504 MLQEHTDEAI WEVLETVQLR ATVASLPGQL HYECTDQGDN LSVGQKQLLC bmy_05438T0/1-1339 MLHEHSDEAI WAALETVQLR AAVASLPGQL HYECADQGDN LSLGQKQLLC BACU012926/1-979 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009767/1-1503 MLHEHSDEAI WAALETVQLR AAVASLPGQL HYECADQGDN LSLGQKQLLC 1501 1550 ENSP00000205557/1-1503 LARALLRKTQ ILILDEATAA VDPGTELQMQ AMLGSWFAQC TVLLIAHRLR ENSBTAP00000047017/1-1504 LARALLRKTQ ILILDEATAA VDPGTERQMQ AALGSWFAQC TVLLIAHRLR bmy_05438T0/1-1339 LARALLRKTQ ILILDEATAA VDPGTERQMQ AALGSWFAQC TVLLIAHRLR BACU012926/1-979 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009767/1-1503 LARALLRKTQ ILILDEATAA VDPGTERQMQ AALGSWFAQC TVLLIAHRLR 1551 1600 ENSP00000205557/1-1503 SVMDCARVLV MDKGQVAESG SPAQLLAQKG LFYRLAQESG LV ENSBTAP00000047017/1-1504 SVLDCARVLV MDEGQVAESG SPAQLLAQKG LFYRLAQESG LV bmy_05438T0/1-1339 SVLDCARVLV MDEGQVAECG SPAQLLAQRG LFYRLAQESG LV BACU012926/1-979 ---------- ---------- ---------- ---------- -- ENSTTRP00000009767/1-1503 SVLDCARVLV MDEGQLAESG SPAQLLAQRG LFYRLAQESG LV