KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:57:58 2014 Check: 00 .. Name: bmy_12546T0/1-343 Len: 819 Check: 9423 Weight: 1.00 Name: ENSTTRP00000006961/1-728 Len: 819 Check: 5870 Weight: 1.00 Name: ENSP00000354960/1-626 Len: 819 Check: 8674 Weight: 1.00 Name: ENSBTAP00000047035/1-626 Len: 819 Check: 1109 Weight: 1.00 // 1 50 bmy_12546T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006961/1-728 AVQAEPGLEE LSAGLGTNSR TDTTVCQPES QTSAGGGRYS GPPRQGLSSA ENSP00000354960/1-626 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047035/1-626 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_12546T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006961/1-728 AGAARRRRRR RREGPGCRGL ASARAPAAPL RPRCRPRAST AGGQPPATAL ENSP00000354960/1-626 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047035/1-626 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_12546T0/1-343 ---------- ---------- -----MKLRQ AALRTAREKW SDYILVPLLP ENSTTRP00000006961/1-728 NMAASPAAPL AWALLLLSWA LLRGGCRARF AAEPDSEDDE GEAVVFSESP ENSP00000354960/1-626 -MAARPAATL AWSLLLLSSA LLREGCRARF VAERDSEDDG EEPVVFPESP ENSBTAP00000047035/1-626 -MAARPAAPL AWALLLLSWA LLRGGCRARF AAEADSEDDE EEAVVFPESP 151 200 bmy_12546T0/1-343 SE-------- ---------- ---------- ---------- ---------- ENSTTRP00000006961/1-728 LQRPTVMVAV LARNAAHTLP HFLGCXXXXX XXXXXXXXXA ATDHNVDNTT ENSP00000354960/1-626 LQSPTVLVAV LARNAAHTLP HFLGCLERLD YPKSRMAIWA ATDHNVDNTT ENSBTAP00000047035/1-626 LQRPTVLVVV LARNAAHTLP HFLGCLERLD YPKSRMAIWA ATDHNVDNTT 201 250 bmy_12546T0/1-343 --LREWSRKM ------LDLT IKNQCYPYP- -------PGN CLSWKGQLPN ENSTTRP00000006961/1-728 EILREWLKNV QRAYHYVEWR PMDEPESYPD EIGPKHWPGS RFAHVMKLRQ ENSP00000354960/1-626 EIFREWLKNV QRLYHYVEWR PMDEPESYPD EIGPKHWPTS RFAHVMKLRQ ENSBTAP00000047035/1-626 EILREWLKNV QKAYHYVEWR PMDEPESYPD EIGPKHWPAS RFAHVMKLRQ 251 300 bmy_12546T0/1-343 QQGATIPIPF GKLTEFIDVD NFLTNPQTLN LLIAENKTVV APMLESRGLY ENSTTRP00000006961/1-728 AALRTAREKW SDYILFIDVD NFLTNPQTLN LLIAENKTVV APMLESRGLY ENSP00000354960/1-626 AALRTAREKW SDYILFIDVD NFLTNPQTLN LLIAENKTIV APMLESRGLY ENSBTAP00000047035/1-626 AALRTAREKW SDYILFIDVD NFLTNPQTLN LLMAENKTIV APMLESRGLY 301 350 bmy_12546T0/1-343 SNFWCGITPQ ASLLAKIRRE KVTLLGDLYL TGDDLGVSLT EDWERGSPQI ENSTTRP00000006961/1-728 SNFWCGITPQ A--------- ---------- ---------- ---------- ENSP00000354960/1-626 SNFWCGITP- ---------- ---------- ---------- ---------- ENSBTAP00000047035/1-626 SNFWCGITP- ---------- ---------- ---------- ---------- 351 400 bmy_12546T0/1-343 SEHNPPVCSL QGFYKRTPDY LQIREWKRLG CFPVPMVHST FLIDLRKEAS ENSTTRP00000006961/1-728 ---------- KGFYKRTPDY LQIREWKRLG CFPVPMVHST FLIDLRKEAS ENSP00000354960/1-626 ---------- KGFYKRTPDY VQIREWKRTG CFPVPMVHST FLIDLRKEAS ENSBTAP00000047035/1-626 ---------- QGFYKRTPDY LQIREWKRLG CFPVPMVHST FLIDLRKEAS 401 450 bmy_12546T0/1-343 DKLMFYPPHQ DYTWTFDDII VFAFSSRQAD SHRPTQDIES RCRGPELFGD ENSTTRP00000006961/1-728 DKLVFYPPHQ DYTWTFDDII VFAFSSRQ-- ---------- ---------- ENSP00000354960/1-626 DKLTFYPPHQ DYTWTFDDII VFAFSSRQ-- ---------- ---------- ENSBTAP00000047035/1-626 DKLMFYPPHQ DYTWTFDDII VFAFSSRQ-- ---------- ---------- 451 500 bmy_12546T0/1-343 SAGKREAEKQ EERTAPPDMA GIQMHLCNRE HYGYLPIPLK PHQTLQEDIE ENSTTRP00000006961/1-728 ---------- ---------A GIQMHLCNRE HYGYLPIPLK PHQTLQEDIE ENSP00000354960/1-626 ---------- ---------A GIQMYLCNRE HYGYLPIPLK PHQTLQEDIE ENSBTAP00000047035/1-626 ---------- ---------A GIQMYLCNRE HYGYLPIPLK PHQTLEEDVE 501 550 bmy_12546T0/1-343 NLIHVQIEAM ---------- ---------- ---------- ---------- ENSTTRP00000006961/1-728 NLIHVQIEAM IDHPPMEPSQ FVSVVPKYPD KMGFNEIFMI NLKRRKDRRD ENSP00000354960/1-626 NLIHVQIEAM IDRPPMEPSQ YVSVVPKYPD KMGFDEIFMI NLKRRKDRRD ENSBTAP00000047035/1-626 NLIHVQTEAM IDGPPMEPSQ FVSVVPKYPD KMGFDEIFMI NLKRRKDRRD 551 600 bmy_12546T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006961/1-728 RMLRTLYEQE IEVKIVEAVD GKALNTSQLK ALNIEMLPGY RDPYSSRPLT ENSP00000354960/1-626 RMLRTLYEQE IEVKIVEAVD GKALNTSQLK ALNIEMLPGY RDPYSSRPLT ENSBTAP00000047035/1-626 RMLRTLYEQE IEVKIVEAVD GKALNTSQLK ALNIEMLPGY RDPYSSRPLT 601 650 bmy_12546T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006961/1-728 RGEIGCFLSH YSVWKEVIDR ELEKTLVIED DVRFEHQFKK KLMKLMDDID ENSP00000354960/1-626 RGEIGCFLSH YSVWKEVIDR ELEKTLVIED DVRFEHQFKK KLMKLMDNID ENSBTAP00000047035/1-626 RGEIGCFLSH YSVWKEVIDR ELEKTLVIED DVRFEHQFKK KLMKLMDDID 651 700 bmy_12546T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006961/1-728 RVQLDWELIY IGRKRMQLKE PEKAVPNVVN LVEADYSYWT LGYVISLEGA ENSP00000354960/1-626 QAQLDWELIY IGRKRMQVKE PEKAVPNVAN LVEADYSYWT LGYVISLEGA ENSBTAP00000047035/1-626 RVQLDWELIY IGRKRMQVKE PEKSVPNVVN LVEADYSYWT LGYVISLEGA 701 750 bmy_12546T0/1-343 ---------- -----NRILP CLYADEKNPK YMEN------ -------LMM ENSTTRP00000006961/1-728 QKLVGANPFG KMLPVDEFLP IMYNKHPVAE YMEHYE-RDL KAFSAEPLLI ENSP00000354960/1-626 QKLVGANPFG KMLPVDEFLP VMYNKHPVAE YKEYYESRDL KAFSAEPLLI ENSBTAP00000047035/1-626 QKLVGADPFG KMLPVDEFLP IMYNKHPVAE YMEHYESRDL KAFSAEPLLI 751 800 bmy_12546T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006961/1-728 YPTHYTGQPG YLSDTETSTI WDNETVATDW DRTHAWKSRK QGHIYRNAKN ENSP00000354960/1-626 YPTHYTGQPG YLSDTETSTI WDNETVATDW DRTHAWKSRK QSRIYSNAKN ENSBTAP00000047035/1-626 YPTHYTGQPG YLSDTETSTI WDNETVATDW DRTHAWKSRK QSRIHRNAKN 801 850 bmy_12546T0/1-343 ---------- --------- ENSTTRP00000006961/1-728 TEALPPPTSL DTVPSRDEL ENSP00000354960/1-626 TEALPPPTSL DTVPSRDEL ENSBTAP00000047035/1-626 TEALPPPASL DTAPSRDEL