KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:58:05 2014  Check: 00 ..

 Name: ENSP00000461269/1-145     Len:    164  Check:  4441  Weight:  1.00
 Name: ENSBTAP00000047167/1-158  Len:    164  Check:  1742  Weight:  1.00
 Name: ENSTTRP00000010316/1-144  Len:    164  Check:  76  Weight:  1.00
 Name: bmy_08632T0/1-143         Len:    164  Check:  1756  Weight:  1.00
 Name: BACU001300/1-143          Len:    164  Check:  1643  Weight:  1.00

//


                          1                                                   50
ENSP00000461269/1-145     MDTFTVQDST AMSWWRNNFW IILAVAIIVV SVGLGLILYC VCKWQLRRGK 
ENSBTAP00000047167/1-158  LSLHSSQDLN AMDWWKDHFW IILAVAIIFT SVSLGTILFC VC------SK 
ENSTTRP00000010316/1-144  LSLHSSQDPM AMDWWRDNFW IILAVAIIVV CVGLSVFLFC VCRCLFRQGK 
bmy_08632T0/1-143         ---------M AMDWWRDNFW IILAVAIIXV SVGLSIFLFC VCRHLFRQGK 
BACU001300/1-143          ---------M AMDWWRDNFW IILAVAIIFV SVGLSIFLFC VCRHLFRQGK 


                          51                                                 100
ENSP00000461269/1-145     KWEIAKPLKH KQVDEEKMYE NVLNESPVQL PPLPPRNWPS LEDSSPQEAP 
ENSBTAP00000047167/1-158  KWEISKSLKQ KQRDEETMYE NVTEQFSVQL PPLPPRDMLS PGVASPQETP 
ENSTTRP00000010316/1-144  KLKIAKPLKQ KQRDEETMYE NVTNQFSVQL PPLPPRGVLS PEVASPQETP 
bmy_08632T0/1-143         KWEITKPLKQ KQRDEETMYE NVTNQFSVQL PPLPPRGVLS PEVASPQETL 
BACU001300/1-143          KWEITKPLKQ KQRDEETMYE NVTNQLSVQL PPLPPRGVLS PEVASPQETP 


                          101                                                150
ENSP00000461269/1-145     SQP-PATYSL VNKVKNKKTV SIPSYIEPED DYDDVEIPAN TEKASF---- 
ENSBTAP00000047167/1-158  SRPTPAAYSS VHKIRNKKTI TVPSYIEPEE DYDDVDVPAN TENHHFETNV 
ENSTTRP00000010316/1-144  SRP-PAAYAS VPKVRNKKTM AVPSYIEPED DYDDVDNPAH GKPSS----- 
bmy_08632T0/1-143         SRP-PAAYSS VNKVRNKKTM AVPSYIEPED DYDDVDNPAH TENHHLETTV 
BACU001300/1-143          SWP-PAAYSS VNKVRNKKTM AVPSYIEPED DYDDVDNPAH MENHHLETTV 


                          151                                                200
ENSP00000461269/1-145     ---------- ---- 
ENSBTAP00000047167/1-158  SSFWQAEDGS QSLF 
ENSTTRP00000010316/1-144  ---------- ---- 
bmy_08632T0/1-143         SSF------- ---- 
BACU001300/1-143          SSF------- ----