KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:06 2014 Check: 00 .. Name: ENSP00000452634/1-654 Len: 736 Check: 8327 Weight: 1.00 Name: ENSBTAP00000047178/1-555 Len: 736 Check: 6509 Weight: 1.00 Name: bmy_05889T0/1-390 Len: 736 Check: 593 Weight: 1.00 Name: ENSTTRP00000002501/1-651 Len: 736 Check: 6402 Weight: 1.00 Name: BACU006296/1-530 Len: 736 Check: 634 Weight: 1.00 // 1 50 ENSP00000452634/1-654 ---------- ---------- ---------- ---------M SEASSEDLVP ENSBTAP00000047178/1-555 ---------- ---------- ---------- ---------M SEASSEDLVP bmy_05889T0/1-390 MLKTTFQGFP GQQPAPGALD FPGSLQKLPF ASEAESEASM SEASSEDLVP ENSTTRP00000002501/1-651 ---------- ---------- ---------- ---------M SEASSEDLVP BACU006296/1-530 MLKTTFQGFP GQQPAPGALD FPGSPQKLPF ASEAESEASM SEASSEDLVP 51 100 ENSP00000452634/1-654 PLEAGAAPYR EEEEAAKKKK EKKKKSKGLA NVFCVFTKGK KKKGQPSSAE ENSBTAP00000047178/1-555 SLEAEVATDR DEEEAG---- KKKKKSKGLA TMISVFTKGR KKKGQPSLSE bmy_05889T0/1-390 PLEAEEAPDR DEEEAA-KKK KKKKKSKGLA NMFS------ ---------- ENSTTRP00000002501/1-651 PLEADEAPDR DEGEAA---- KKKKKSKGLA NMFSVFTKGR KKKSQPSSAE BACU006296/1-530 PLEAEEAPDR DGEEAAKKKK KKKKKSKGLA NMFSVFTKGR KKKSQPSSAE 101 150 ENSP00000452634/1-654 PEDAAGSRQG LDGPPPTVEE LKAALERGQL EAARPLLALE RELAAAAAAG ENSBTAP00000047178/1-555 TEGESESSPR PPAQLPTVEE LKADLERGRL EAARPLLALE LELQEAAAAG bmy_05889T0/1-390 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002501/1-651 TEGDSESQSG PAGRLPTVEE LKADLEHGRL EAAGPLLALE RELQAAMAAG BACU006296/1-530 TEGDSEPRPR PAGRPPT--- ---------- ---------- ---------- 151 200 ENSP00000452634/1-654 GVSEEELVRR QSKVEALYEL LRDQVLGVLR RPLEAPPERL RQALAVVAEQ ENSBTAP00000047178/1-555 RASEEELVRR QSKVEALYAL LRDQVLG--- ---------- ---------- bmy_05889T0/1-390 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002501/1-651 GVSEEELLRR QSKVEALYVL LRDQVLGLLR RPLEAAPERL RQALAVLAEQ BACU006296/1-530 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000452634/1-654 EREDRQAAAA GPGTSGLAAT RPRRWLQLWR RGVAEAAEER MGQRPAAGAE ENSBTAP00000047178/1-555 ---------- ---------- ---------- ---------- ---------- bmy_05889T0/1-390 ---------- ---------- ---------- ---------- ---RPAAVAE ENSTTRP00000002501/1-651 EREDRAAAAA GPGPSALAAT RPRRWLQLWR RSVAQAAEER LGQRPAAAAE BACU006296/1-530 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000452634/1-654 ---VPESVFL HLGRTMKEDL EAVVERLKPL FPAEFGVVAA YAESYHQHFA ENSBTAP00000047178/1-555 ----PERTFL HMGPH-KEDL EARGE-LKPL FPADIRVVAT Y-ESYHAEFA bmy_05889T0/1-390 GRTEAERAFL HMGRTMKEDL EAVVERLKPL FPAEFAVVAA YAQSYHEHFA ENSTTRP00000002501/1-651 GRTEAERVFL HMGRTMKEDL EAVVERLKPL FPAEFAVVAA YAESYHEHFA BACU006296/1-530 ---------- ---------- ---------- ---------- -APSAHS--- 301 350 ENSP00000452634/1-654 AHLAAVAQFE LCERDTYMLL LWVQNLYPND IINSPKLVGE LQGMGLGSLL ENSBTAP00000047178/1-555 SQLAALTQFE LCQRDTYMLL LWVQNLYPND ILNSPKLAPE LQGVRLGTLL bmy_05889T0/1-390 AHLADLAQFE LSERDTYVLL L--------- ---------- ---------- ENSTTRP00000002501/1-651 AQLADLAQFE LSERDTYVLL VWVQNL-PND VINSPKLAGE LQGVGLGSLL BACU006296/1-530 ---------- ---------- ---------D IINSPKLAGE LQGVRLGSLL 351 400 ENSP00000452634/1-654 PPRQIRLLEA TFLSSEAANV RELMDRALEL EARRWAEDVP PQRLDGHCHS ENSBTAP00000047178/1-555 PPTQIRLLEA TFLSNEVASV RELTARALEL ESNRWTNDEA PQRLDGHCHS bmy_05889T0/1-390 ---------- ---------- ---------- ----WVQNLY P--------- ENSTTRP00000002501/1-651 PPEQIRLLEA TFLSNQVASV KELTARALEL ESQRWTQDVA PQRLDGRCHS BACU006296/1-530 SPKQIRLLEA TFLSNEVDSV KELMARALEL ESQRWSQDVA PQRLDGRCHS 401 450 ENSP00000452634/1-654 ELAIDIIQIT SQAQAKAESI TLDLGSQIKR VLLVELPAFL RSYQRAFNEF ENSBTAP00000047178/1-555 ELAIDIIQII SQGQAKAESI TLDLGAQIKP LLLEELARFL RSYQRAFDGF bmy_05889T0/1-390 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002501/1-651 ELAIDIIQII SQGQAKAESI TLDLGAQMKH LLLVELAAFL NSYQRAFDEF BACU006296/1-530 ELAIDVIQII SQGQAKAESI TLDLGTQIKH MLLVELAAFL KSYQRAFDEF 451 500 ENSP00000452634/1-654 LERGKQLTNY RANVIANINN CLSFRMSMEQ NWQVPQDTLS LLLGPLGELK ENSBTAP00000047178/1-555 LERCRQLRNY RANVIANINN CLPFRTSLEQ QWQTPPDLRS SLLRPLNELK bmy_05889T0/1-390 ---------- ---------- ----KMFVDQ KWQIPQDLPS HLLSPLNELK ENSTTRP00000002501/1-651 LERSKQLRNY RANVIANINN CLSFRMFVDQ KWQTPQDIPS HLLSPLDELK BACU006296/1-530 LERCKQLRNY RANVIANINN CLSFRMFVDQ KWQIPQDLPS HLLSPLNELK 501 550 ENSP00000452634/1-654 SHGFDTLLQN LHEDLKPLFK RFTHTRWAAP VETLENIIAT VDTRLPEFSE ENSBTAP00000047178/1-555 SHGFDTLLQS -----HVLFA LATAPPWTLA FR------EV VGSHGPARSP bmy_05889T0/1-390 SHGVDALLQN LFGVLKPLFK RFTQTRWAAP AQTLEEIISV VGERLPEFSE ENSTTRP00000002501/1-651 SHGVDTLLQS LFGALKPLFK RFTQTRWAAP AQTLEEIISV VGERLPEFSE BACU006296/1-530 SHGIDTLLQN LFGVLKPLFK RFTQTRWAAP TQTLEEIISV VGERLPEFSE 551 600 ENSP00000452634/1-654 LQGCFREELM EALHLHLVKE YIIQLSKGRL VLKTAEQQQQ LAGYILANAD ENSBTAP00000047178/1-555 TQ-----ELL EAVHLHLVKE YIARLCKRRL VLQTAEQQQQ LAGHVQANAQ bmy_05889T0/1-390 LQDCFREELM ELVHLHLVKE YIARLSKRRL VLNTAEKQQQ LAGHVLANAE ENSTTRP00000002501/1-651 LQDCFREELM EVVHLHLVKE YIVRLSKRRL VLKTAEQQQQ LAGHILANAE BACU006296/1-530 LQDCFREELM EVVHLHLVKE YIIRLSKRRL VLNTAEKQQQ LAGHIRANAE 601 650 ENSP00000452634/1-654 TIQHFCTQHG SPATWLQPAL PTLAEIIRLQ DPSAIKIEVA TYATCYPDFS ENSBTAP00000047178/1-555 LIQQFCTQNG SPATWLHDAL PRLAEIIRLQ DPSAIKIEVA SYATSYPDFS bmy_05889T0/1-390 LIQRFCTQNG SPATWLHRAL PTLAEIIRLQ DPSAIKIEVA TYATWYPDFS ENSTTRP00000002501/1-651 LIQRFCTQNG SPATWLHRAL PMLAEIIRLQ DPSAIKIEVA TCAAWYPDFX BACU006296/1-530 LIQHFCAQNG SPATWLHRAL PTLAEIIRLQ DPSAIKIEVA TYATWYPDFS 651 700 ENSP00000452634/1-654 KGHLSAILAI KGNLSNSEVK RIRSILDVSM GAQEPSRPLF SLI------- ENSBTAP00000047178/1-555 KGHLSAILTI KGNLSSSDAK SIRSILDINT GAHEPSKALF SLI------- bmy_05889T0/1-390 KGHLSAILAI KGNLSSSEVR SIRSILDINT GAHEPSKALF SLI------- ENSTTRP00000002501/1-651 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXSKSLF HV-------- BACU006296/1-530 KGHLSAILAV KGNLSSSEVR SIRTILDINT GAHEPSKSLF SLIKAQRALL 701 750 ENSP00000452634/1-654 ---------- KVG------- ---------- ------ ENSBTAP00000047178/1-555 ---------- K--------- ---------- ------ bmy_05889T0/1-390 ---------- KVG------- ---------- ------ ENSTTRP00000002501/1-651 ---------- KVG------- ---------- ------ BACU006296/1-530 RAEAQFRGRS KSGSVPSPPH RHWDRTQASV ERRQPR