KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:07 2014 Check: 00 .. Name: bmy_12608T0/1-235 Len: 358 Check: 7085 Weight: 1.00 Name: ENSP00000363913/1-347 Len: 358 Check: 8467 Weight: 1.00 Name: ENSBTAP00000047191/1-343 Len: 358 Check: 4440 Weight: 1.00 Name: BACU019930/1-308 Len: 358 Check: 7285 Weight: 1.00 Name: ENSTTRP00000011671/1-319 Len: 358 Check: 281 Weight: 1.00 // 1 50 bmy_12608T0/1-235 MLLLGMMAFD CYVAICNPLR YPVIMSKVVY IILFGVDLLA SARGLIHKAS ENSP00000363913/1-347 -MIVQLICTV CFLAV----- -NTFHVRSSF DFLKADDMGE INQTLV---- ENSBTAP00000047191/1-343 -----ITWNT CFLTV----- -NISYRRSSF DILKAEDMDK INQTFL---- BACU019930/1-308 -----VTCNI CFLAV----- -NVFYIRSSF DILKVDDMDK INQTFV---- ENSTTRP00000011671/1-319 -IIVQVICNI RFLAV----- -NIFYIRSSF DILKVDDMDK INQTFV---- 51 100 bmy_12608T0/1-235 SNLNMVGINI LYEISLSK-R MKITLYLLIL IGKHVLIIAS IFDSRLHTLM ENSP00000363913/1-347 SEFLLLGLSG YPKIEIVYFA LILVMYLVIL IGNGVLIIAS IFDSHFHTPM ENSBTAP00000047191/1-343 LEFLLLGLSE YPKIEIVYFV VILSMYLVVL IGNGVLITAS IFDSHLHSPM BACU019930/1-308 LGF--LGLSG YPKIEIVDFV LILIMYLVIL IGSGVLIIAS IFDSHLHTPI ENSTTRP00000011671/1-319 LEFLLLGLSG YPKIEIVDFV LILIMYLVIL IGNGVLIIAS IFDSHLHTPM 101 150 bmy_12608T0/1-235 YFFLRNLSFL DVCYTSSSVP STLVSLISKK RNISFSGCVV QMFLGFAMGS ENSP00000363913/1-347 YFFLGNLSFL DICYTSSSVP STLVSLISKK RNISFSGCAV QMFFGFAMGS ENSBTAP00000047191/1-343 YFFLGNLSFL DICYTSSSVP STLVSLISKK RNISFSGCAV QMFFGFAMGS BACU019930/1-308 YFFLGNLSFL D--------- -----LISKK RNISFSGCAV QMFLGFAMGS ENSTTRP00000011671/1-319 YFFLGNLSFL D--------- ----SLIS-K RNISFSGCAV QMFLGFAMVS 151 200 bmy_12608T0/1-235 TECFFLGMMA FDCYVAICNP LRYPVIMSKV VYVLMASVSW LSGRINSIVQ ENSP00000363913/1-347 TECLLLGMMA FDRYVAICNP LRYPIILSKV AYVLMASVSW LSGGINSAVQ ENSBTAP00000047191/1-343 TECLLLGMMA FDRYVAICNP LRYPVIMSKV VYILMASVSW LSGGINSIVQ BACU019930/1-308 TEC--LGMMA FDCYVAICNP LRYPVIMSKV VYVLMASVSW LSGGINSVVQ ENSTTRP00000011671/1-319 TEC-LLGMMA FDCYVAVCNP LRYPVIMSKV VYVLMASVSW LSGGINSVVQ 201 250 bmy_12608T0/1-235 TSLAMRLPF- ---------C DILEIQK--- ---------- ---------- ENSP00000363913/1-347 TLLAMRLPFC GNNIINHFAC EILAVLKLAC ADISLNIITM VISNMAFLVL ENSBTAP00000047191/1-343 TSLAIRLPFC ENNVINHFTC EILAVLKLAC TDISLNIITM MVSNMAFLVL BACU019930/1-308 TSLAMRLPFC ENDVLNHFPC EILAVLKLAC ADISLSIITM TISNMAFLIL ENSTTRP00000011671/1-319 TSLAM-LPFC ENNVINHFPC EILAVLKLAC ADISLSIITM TISDMAFLIL 251 300 bmy_12608T0/1-235 ---------- ---------- ---------- ---------- ---------- ENSP00000363913/1-347 PLMVIFFSYM FILYTILQMN SATGRRKAFS TCSAHLTVVI IFYGTIFFMY ENSBTAP00000047191/1-343 PLLVIFFSYM FILYTILRMN SATGRHKAFS TCSAHLTVVI IFYGTILFMY BACU019930/1-308 PLLIIFFSYM FSLYTILRMN SATGRHKAFS TCSAYLTVVI IFYDTIFFMY ENSTTRP00000011671/1-319 PLLIIFFSYM FSLYTILRMN SATGRCKAFS ICSAYLTVVI IFYDTLFFMY 301 350 bmy_12608T0/1-235 ---TVEDYKE EN-------- ---------- IVTTVATSYR ---------- ENSP00000363913/1-347 AKPKSQDLIG EEKLQALDKL ISLFYGVVTP MLNPILYSLR NKDVKAAVKY ENSBTAP00000047191/1-343 AKPKSQELHG ENKLQASDKL ISLFYGVVTP MLNPIIYSLR NKDVKAAVKY BACU019930/1-308 AKPTSQELPG EN-LQTSDKL ISLFYSVVTP MLNPMIYSLR NK-------- ENSTTRP00000011671/1-319 AKPTSQELPG ENKLQTSDKL ISLFYGVVTP MLNPMIYSLR NK-------- 351 400 bmy_12608T0/1-235 -------- ENSP00000363913/1-347 LLNKKPIH ENSBTAP00000047191/1-343 LLNQKPIQ BACU019930/1-308 -------- ENSTTRP00000011671/1-319 ----KPIQ