KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:58:08 2014  Check: 00 ..

 Name: ENSP00000256951/1-157     Len:    192  Check:  838  Weight:  1.00
 Name: ENSBTAP00000047239/1-160  Len:    192  Check:  9511  Weight:  1.00
 Name: ENSTTRP00000012028/1-160  Len:    192  Check:  8398  Weight:  1.00
 Name: bmy_01972T0/1-115         Len:    192  Check:  1903  Weight:  1.00
 Name: BACU016982/1-186          Len:    192  Check:  8909  Weight:  1.00

//


                          1                                                   50
ENSP00000256951/1-157     ---------- ---------- ---------- MLVLLAGIFV VHIATVIMLF 
ENSBTAP00000047239/1-160  ---------- ---------- ---------- MLVLLASIFV VHIATVIMLF 
ENSTTRP00000012028/1-160  ---------- ---------- ---------- MLVLLASIFV VHIATVIMLF 
bmy_01972T0/1-115         ---------- ---------- ---------- ---------- ---------- 
BACU016982/1-186          MSGLASWSKD PLDFTLFEEL SSLPSHQKAK MLVLLASIFV VHIATVIMLF 


                          51                                                 100
ENSP00000256951/1-157     VSTIANVWLV SNTVDASVGL WKNCTNI-SC SDSLSYA-SE DALKTVQAFM 
ENSBTAP00000047239/1-160  VSTIANVWVV SDLGTGSVGL WKNCTSG-GC GDNLSYA-GE DALKAVQAFM 
ENSTTRP00000012028/1-160  VSTIANAWMV SDVGNISVGL WKNCTSA-DC SHNLLYG-SE DALKAVQAFM 
bmy_01972T0/1-115         ---------- ----MSGLAS WSK------- -DPLDFTLFE DALKAVQAFM 
BACU016982/1-186          VSTIANVWMV LNNGTGSVGL WKNCTSTDGC SDSLSYG-GE DALKAVQAFM 


                          101                                                150
ENSP00000256951/1-157     ILSIIFCVIA LLVFVFQLFT MEKGNRFFLS GATTLVCWLC ILVGVSIYTS 
ENSBTAP00000047239/1-160  ILSIIFSVIS LVVFVFQLFT MEKGNRFFLS GATMLVCWLC VMVGASIYTH 
ENSTTRP00000012028/1-160  ILSIIFSVIS LVVFVFQLFT MEKGNRFFLS GATMLVCWLC ILVGASIYTH 
bmy_01972T0/1-115         ILSIIFSVIS LVVFVFQLFT MEKGNRFFLS GATMLLCWLC ILVGASIYTH 
BACU016982/1-186          ILSIIFSVIS LVVFVFQLFT MEKGNRFFLS GATMLLCWLC ILVGASIYTH 


                          151                                                200
ENSP00000256951/1-157     HYANR---DG TQYHHGYSYI LGWICFCFSF IIGVLYLVLR KK 
ENSBTAP00000047239/1-160  HYANGSINNY EPSHHGYSFI LTWICFCFSF IIGILYLVLR KK 
ENSTTRP00000012028/1-160  HYANNFKDWY PESHHGYSFI LTWICFCFSF IIGILYLVLR KK 
bmy_01972T0/1-115         HYASN----- SQGHHGYSFI LTWICFCFSF IIGILYLVLR KK 
BACU016982/1-186          HYADG----- SQSHQGYSFI LTWICFCFSF IIGILYLVLR KK