KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:08 2014 Check: 00 .. Name: bmy_15188T0/1-455 Len: 492 Check: 1972 Weight: 1.00 Name: ENSP00000307264/1-449 Len: 492 Check: 759 Weight: 1.00 Name: ENSBTAP00000047282/1-388 Len: 492 Check: 4174 Weight: 1.00 Name: BACU003555/1-385 Len: 492 Check: 9656 Weight: 1.00 Name: ENSTTRP00000009803/1-372 Len: 492 Check: 4868 Weight: 1.00 // 1 50 bmy_15188T0/1-455 ---------- --MSLQGSRR RGRSE---IT QPRYLGR-YR EVSTDCETST ENSP00000307264/1-449 MWTALVLIWI FSLSLSESHA ASNDPRNFVP NKMWKGLVKR NASVETVD-- ENSBTAP00000047282/1-388 MWTALVLVWV SSWSLSESLH TSKHS---LL NQTWDHL-EK NSSVETATEV BACU003555/1-385 MWTALVLIWV SSWSLSESRL TFQHP---VL NKTLENS-EQ NSSVEAIARV ENSTTRP00000009803/1-372 MWTALVLIWV SSWSLSESHL TAPHPRYSVL NKTLENS-EQ NSSMETVTRV 51 100 bmy_15188T0/1-455 RNHHFRQRPA RNSRFQPLSR HSWSRSAVGG ALGTATPLAS GSAPAAPGAA ENSP00000307264/1-449 -NKTSEDVTM AAASPVTLTK GTSAAHLNSM EVTTED--TS RTDVSEPATS ENSBTAP00000047282/1-388 LNTTAERMTP ATPSPVTKTR GTWGGDHTSL AVTAGA--TH RTDVGTSATA BACU003555/1-385 LNETSERMTS VTPSPVTLTR GTWGGDPTSP AVTAGT--TH RTEAGASATA ENSTTRP00000009803/1-372 LNEMSARMSS VTPSPITLTR GTWGGDPTSP AVTAGT--MH RTEAGASATA 101 150 bmy_15188T0/1-455 GRLPAPADAA PPSRTRPPVT SPPGRSGRGQ SWGGCPEQSW LAVALLRCRP ENSP00000307264/1-449 GGAADGVTSI APTAVASSTT AASITTA--- ---------- -ASSMTVASS ENSBTAP00000047282/1-388 GGTRAGAASR PPV------- ---------- ---------- ---------- BACU003555/1-385 KGTPNRATSR VPT------- ---------- ---------- ---------- ENSTTRP00000009803/1-372 EGTPDGATSG VPT------- ---------- ---------- ---------- 151 200 bmy_15188T0/1-455 RPHAGPRALP RRPRASGPPQ ACHARMHLLP EWSICLDPTC ATKRAMAWEC ENSP00000307264/1-449 APTTAASSTT VASIAPTTAA SSMTAASSTP MTLALPAPTS TS----TGRT ENSBTAP00000047282/1-388 ---------- ---------- ---------- ------PPTP AS----AWRT BACU003555/1-385 ---------- ---------- ---------- ------PPVP AP----AWRT ENSTTRP00000009803/1-372 ---------- ---------- ---------- ---------- --------RT 201 250 bmy_15188T0/1-455 PSEPSS--PP AEPNLARQVH NSSAKQQGTV NSLRNGRLGA SGTAQPCSQL ENSP00000307264/1-449 PSTTATGHPS LSTALAQVPK SSALPRTATL ATLATRAQTV ATTANTSSPM ENSBTAP00000047282/1-388 PSVPGTRAPG NGT--SSRPT TAMPPTTRTP ATSAQPA--A GTPTNVSGPA BACU003555/1-385 PSSPHTRAPG SGTLSGPATR TTPTPATGAP TA-------A AALAGVSGPL ENSTTRP00000009803/1-372 PSSPHTRAPG SGT-LSPATH TTPTPATGAP TA-------A AALASVSGPL 251 300 bmy_15188T0/1-455 TCKMWTALVL IWVSFWSLSE SYLTIQHPLL NKTLENSERN SSVEA---IT ENSP00000307264/1-449 STRPSP---- ---SKHMPSD TAASPVPPMR PQA-----QG PISQVS--VD ENSBTAP00000047282/1-388 GSHGLP---- ---------- GPTASLTPSS PQALSESTQG RTIQAPTPTP BACU003555/1-385 GSHGHP---- ----GHTPGH AIASPTVPLS PQALNASTRG PTVQAP--TP ENSTTRP00000009803/1-372 -TRTRP---- ----GHTPGH ATASPTVPLS PQTLNASTQG PTVQAP--TA 301 350 bmy_15188T0/1-455 RVLNETSER- ---MTSVTPS PV-------- -TLTRGTWGG DPTSPAVTAG ENSP00000307264/1-449 QPVVNTTNKS TPMPSNTTPE PAPTP----- -TVVTTTKAQ AREPTASPVP ENSBTAP00000047282/1-388 RTVDDTAQRP TPTLLNTTPE PASPTVASMS TTMGITTKAP EPTVSTAAAS BACU003555/1-385 LTAADAASRP APTLLSTTPE PGSPTSASAS MTVGTTTKAP QPAASTAPAP ENSTTRP00000009803/1-372 RTAADTASRP APTLLNTTPE PASPS----- -TVGTTTKAP QPAASTAPAS 351 400 bmy_15188T0/1-455 TTHRTEA--- GAPAPPTRPS PVTSTLGAAG PGTTQTPEQG EPEAAPGTAS ENSP00000307264/1-449 VPHTSPIPEM EAMSPTTQPS PMPYTQRAAG PGTSQAPEQV ETEATPGTDS ENSBTAP00000047282/1-388 TAHTSPAPTV EATTPTTRPS PATSTPGAAG PGTTQTPEQT EPAATPGTTS BACU003555/1-385 APHPRPA--- ----PPTRPS PVTSTPGAAG PGTTQTPGRG EPEAAPGTAS ENSTTRP00000009803/1-372 APHSSPA--- ----PPTQPS PVTSMPGAAG PGTTQTPEQG EPEAAPGTAS 401 450 bmy_15188T0/1-455 VGPTPGSSGD SKVPATDACQ LSSQGRYLVV SSEPLAQSPV NRSFLLAVLL ENSP00000307264/1-449 TGPTPRSSGG TKMPATDSCQ PSTQGQYMVV TTEPLTQAVV DKTLLLVVLL ENSBTAP00000047282/1-388 PGPTP---GE SKVPPTDSCQ PSTQGQYLVV SSEPLALSSV NRSFLLAVLL BACU003555/1-385 VGPTPGSSGD SKVPATDACQ LSSQGRYLVV SSEPLAQSPV NRSFLLAVLL ENSTTRP00000009803/1-372 VGPTPGSSGD SKVPATDACQ LSTQGRYLVV SSEPLAQSPV NRSFLLAVLL 451 500 bmy_15188T0/1-455 LGVALFITVL VLFALQAYES YRKKGYTQVD YLINGMYADT EM ENSP00000307264/1-449 LGVTLFITVL VLFALQAYES YKKKDYTQVD YLINGMYADS EM ENSBTAP00000047282/1-388 LGVTLFITVL ILFALQAYES YRKKDYTQVD YLINGMYADS EM BACU003555/1-385 LGVALFITVL VLFALQAYES YRKKGYTQVD YLINGMYADT EM ENSTTRP00000009803/1-372 LGVTLFITVL VLFALQAYES YKRKDYTQVD YLINGMYADS EM