KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:58:08 2014 Check: 00 ..
Name: bmy_07974T0/1-569 Len: 610 Check: 8134 Weight: 1.00
Name: ENSTTRP00000013210/1-566 Len: 610 Check: 3980 Weight: 1.00
Name: ENSP00000391774/1-551 Len: 610 Check: 6552 Weight: 1.00
Name: ENSBTAP00000047307/1-551 Len: 610 Check: 6552 Weight: 1.00
Name: BACU016438/1-514 Len: 610 Check: 4917 Weight: 1.00
//
1 50
bmy_07974T0/1-569 MADGVDHIDI YADVGEEFNQ EAEYGGHDQI DLYDDVISPS ANNGDAPEDR
ENSTTRP00000013210/1-566 ---------- ---------- EAEYGGHDQI DLYDDVISPS ANNGDAPEDR
ENSP00000391774/1-551 MADGVDHIDI YADVGEEFNQ EAEYGGHDQI DLYDDVISPS ANNGDAPEDR
ENSBTAP00000047307/1-551 MADGVDHIDI YADVGEEFNQ EAEYGGHDQI DLYDDVISPS ANNGDAPEDR
BACU016438/1-514 ---------- ---------- ---------- ---------- ----------
51 100
bmy_07974T0/1-569 DYMDTLPPTV GDDVGKGAAP NVVYTYTGKR IALYIGNLTW WTTDEDLTEA
ENSTTRP00000013210/1-566 DYMDTLPPTV GDDVGKGAAP NVVYTYTGKR IALYIGNLTW XXXDEDLTEA
ENSP00000391774/1-551 DYMDTLPPTV GDDVGKGAAP NVVYTYTGKR IALYIGNLTW WTTDEDLTEA
ENSBTAP00000047307/1-551 DYMDTLPPTV GDDVGKGAAP NVVYTYTGKR IALYIGNLTW WTTDEDLTEA
BACU016438/1-514 --MDTLPPTV GDDVGKGAAP NVVYTYTGKR IALYIGNLTW WTTDEDLTEA
101 150
bmy_07974T0/1-569 VHSLGVNDIL EIKFFENRAN GQSKGFALVG VGSEASSKKL MDLLPKRELH
ENSTTRP00000013210/1-566 -HSLGVNDI- EIKFFENRAN DQSKGFALVG VGSEASSKKL MDLLPKRELH
ENSP00000391774/1-551 VHSLGVNDIL EIKFFENRAN GQSKGFALVG VGSEASSKKL MDLLPKRELH
ENSBTAP00000047307/1-551 VHSLGVNDIL EIKFFENRAN GQSKGFALVG VGSEASSKKL MDLLPKRELH
BACU016438/1-514 VHSLGVNDIL EIKFFENRAN GQSKGFALVG VGSEASSKKL MDLLPKRELH
151 200
bmy_07974T0/1-569 GQNPVVTPCN KQFLSQFEMQ SRKTTQSGQM SGEGKAGPPG GSSRAAFPQG
ENSTTRP00000013210/1-566 GQNPVVTPCN KQFLSQFEMQ SRKTTQSGQM SGEGKAGPPG GSSRAAFPQG
ENSP00000391774/1-551 GQNPVVTPCN KQFLSQFEMQ SRKTTQSGQM SGEGKAGPPG GSSRAAFPQG
ENSBTAP00000047307/1-551 GQNPVVTPCN KQFLSQFEMQ SRKTTQSGQM SGEGKAGPPG GSSRAAFPQG
BACU016438/1-514 GQNPVVTPCN KQFLSQFEMQ SRKTTQSGQM SGEGKAGPPG GSSRAAFPQG
201 250
bmy_07974T0/1-569 GRGRARFPGA VPGGDRFPGP AGPGGPPPPF P--------- ----------
ENSTTRP00000013210/1-566 GRGRARFPGA VPGGDRFPGP AGPGGPPPPF PGNLIKHLVK GTRPLFLETR
ENSP00000391774/1-551 GRGRGRFPGA VPGGDRFPGP AGPGGPPPPF P--------- ----------
ENSBTAP00000047307/1-551 GRGRGRFPGA VPGGDRFPGP AGPGGPPPPF P--------- ----------
BACU016438/1-514 GRGRARFPGA VPGGDRFPGP AGPGGPPPPF P--------- ----------
251 300
bmy_07974T0/1-569 ---------- --------AG QTPPRPPLGP PGPPGPPGPP PPGQVLPPPL
ENSTTRP00000013210/1-566 IPWHMGHSIE EIPIFGLKAG QTPPRPPLGP PGPPGPPGPP PPGQVLPPPL
ENSP00000391774/1-551 ---------- --------AG QTPPRPPLGP PGPPGPPGPP PPGQVLPPPL
ENSBTAP00000047307/1-551 ---------- --------AG QTPPRPPLGP PGPPGPPGPP PPGQVLPPPL
BACU016438/1-514 ---------- --------AG QTPPRPPLGP PGPPGPPGPP PPGQVLPPPL
301 350
bmy_07974T0/1-569 AGPPNRGDRP PPPVLFPGQP FGQPPLGPLP PGPPPPVPGY GPPPGPPPPQ
ENSTTRP00000013210/1-566 AGPPNRGDRP PPPVLFPGQP FGQPPLGPLP PGPPPPVPGY GPPPGPPPPQ
ENSP00000391774/1-551 AGPPNRGDRP PPPVLFPGQP FGQPPLGPLP PGPPPPVPGY GPPPGPPPPQ
ENSBTAP00000047307/1-551 AGPPNRGDRP PPPVLFPGQP FGQPPLGPLP PGPPPPVPGY GPPPGPPPPQ
BACU016438/1-514 AGPPNRGDRP PPPVLFPGQP FGQPPLGPLP PGPPPPVPGY GPPPGPPPPQ
351 400
bmy_07974T0/1-569 QGPPPPPGPF PPRPPGPLGP PLTLAPPPHL PGPPPGAPPP APHVNPAFFP
ENSTTRP00000013210/1-566 QGPPPPPGPF PPRPPGPLGP PLTLAPPPHL PGPPPGAPPP APHVNPAFFP
ENSP00000391774/1-551 QGPPPPPGPF PPRPPGPLGP PLTLAPPPHL PGPPPGAPPP APHVNPAFFP
ENSBTAP00000047307/1-551 QGPPPPPGPF PPRPPGPLGP PLTLAPPPHL PGPPPGAPPP APHVNPAFFP
BACU016438/1-514 QGPPPPPGPF PPRPPGPLGP PLTLAPPPHL PGPPPGAPPP APHVNPAFFP
401 450
bmy_07974T0/1-569 PPTNSGMPTS DSRGPPPTDP YGRPPPYDRG DYGPPGREMD TARTPLSEAE
ENSTTRP00000013210/1-566 PPTNSGMPTS DSRGPPPTDP YGRPPPYDRG DYGPPGREMD TARTPLSEAE
ENSP00000391774/1-551 PPTNSGMPTS DSRGPPPTDP YGRPPPYDRG DYGPPGREMD TARTPLSEAE
ENSBTAP00000047307/1-551 PPTNSGMPTS DSRGPPPTDP YGRPPPYDRG DYGPPGREMD TARTPLSEAE
BACU016438/1-514 PPTNSGMPTS DSRGPPPTDP YGRPPPYDRG DYGPPGREMD TARTPLSEAE
451 500
bmy_07974T0/1-569 FEEIMNRNRA ISSSAISRAV SDASAGDYGS AIETLVTAIS LIKQSKVSAD
ENSTTRP00000013210/1-566 FEEIMNRNRA ISSSAISRAV SDASAGDYGS AIETLVTAIS LIKQSKVSAD
ENSP00000391774/1-551 FEEIMNRNRA ISSSAISRAV SDASAGDYGS AIETLVTAIS LIKQSKVSAD
ENSBTAP00000047307/1-551 FEEIMNRNRA ISSSAISRAV SDASAGDYGS AIETLVTAIS LIKQSKVSAD
BACU016438/1-514 FEEIMNRNRA ISSSAISRAV SDASAGDYGS AIETLVTAIS LIKQSKVSAD
501 550
bmy_07974T0/1-569 DRCKVLISSL QDCLHGIESK SYGSGSR--- -QFMKHFSLL NKNENEDVND
ENSTTRP00000013210/1-566 DRCKVLISSL QDCLHGIESK SYGSGS---- ---------- -RRERSRERD
ENSP00000391774/1-551 DRCKVLISSL QDCLHGIESK SYGSGS---- ---------- -RRERSRERD
ENSBTAP00000047307/1-551 DRCKVLISSL QDCLHGIESK SYGSGS---- ---------- -RRERSRERD
BACU016438/1-514 DHCKVLISSL QDCLHGIESK SYGSGSSYLI MESINPVISF RRRERSRERD
551 600
bmy_07974T0/1-569 QEKGIIVDHE KRVGVINPAV EIVMMIITER EAENERDTGT GTGTVIESAT
ENSTTRP00000013210/1-566 HSRSREKSRR HKSRSRDRHD DYYRERSRER ERHRDRDRDR DRERDREREY
ENSP00000391774/1-551 HSRSREKSRR HKSRSRDRHD DYYRERSRER ERHRDRDRDR DRERDREREY
ENSBTAP00000047307/1-551 HSRSREKSRR HKSRSRDRHD DYYRERSRER ERHRDRDRDR DRERDREREY
BACU016438/1-514 HSRSREKSRR HKSRSRDRHD DYYRERSRER ERHRDRDRDR DRERDREREY
601 650
bmy_07974T0/1-569 ESASIVIVRS
ENSTTRP00000013210/1-566 RHR-------
ENSP00000391774/1-551 RHR-------
ENSBTAP00000047307/1-551 RHR-------
BACU016438/1-514 RHR-------