KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:10 2014 Check: 00 .. Name: bmy_10453T0/1-897 Len: 1102 Check: 4980 Weight: 1.00 Name: ENSTTRP00000009539/1-1044 Len: 1102 Check: 9962 Weight: 1.00 Name: ENSP00000350333/1-1083 Len: 1102 Check: 6595 Weight: 1.00 Name: ENSBTAP00000047415/1-1080 Len: 1102 Check: 1172 Weight: 1.00 Name: BACU009916/1-1057 Len: 1102 Check: 2734 Weight: 1.00 // 1 50 bmy_10453T0/1-897 RLGGGGGGGS GSPRTPAPQA ESARERARGG AAATRRSTQV EMSSQQFPRL ENSTTRP00000009539/1-1044 ---------M GPPRH--PQP GDVESGGAG- ---GGRR-QV EMSSQQFPRL ENSP00000350333/1-1083 ---------M GPPRH--PQA GEIEAGGAG- ---GGRRLQV EMSSQQFPRL ENSBTAP00000047415/1-1080 ---------R G--------- ---RFGGRGL ERSGGRLARV EMSSQQFPRL BACU009916/1-1057 ---------- ---------- ---------- ---------- -MSSQQFPRL 51 100 bmy_10453T0/1-897 GTPSTGLSQA PSQIANSGSA GLISPAATVN DESSRDAEVT AREHVGSSSS ENSTTRP00000009539/1-1044 GTPSTGLSQA PSQIANSGSA GLINPAATVN DESSRDAXXX XXXXXXXXXX ENSP00000350333/1-1083 GAPSTGLSQA PSQIANSGSA GLINPAATVN DESGRDSEVS AREHMSSSSS ENSBTAP00000047415/1-1080 GTPSTGLSQA PSQIANSGSA GLINPAATVN DESSRDAEVA AREHMGSSSS BACU009916/1-1057 GTPSTGLSQA PSQIANSGSA GLINPAATVN DESSRDAEVT AREHVGSSSS 101 150 bmy_10453T0/1-897 LQPREEKQEP VV-------- ---------- ---------- ---------- ENSTTRP00000009539/1-1044 XXXXXXXXXX XXXXXXXXXX XXXXXHAVAS GT-VTVTAPP AHLTPAVPLS ENSP00000350333/1-1083 LQSREEKQEP VVVRPYPQVQ MLSTHHAVAS ATPVAVTAPP AHLTPAVPLS ENSBTAP00000047415/1-1080 LQSREEKQEP VVVRPYPQVQ MLSTHHAVAS GTPVTVAAPP AHLTPAVPLS BACU009916/1-1057 LQPREEKQEP VVVRPYPQVQ MLSTHHAVAS GTPVTVTAPP AHLTPAVPLS 151 200 bmy_10453T0/1-897 -------PPP KPTMPSRPIA PAPPSTLSLP PKVPGQVTVT MESSIPQASA ENSTTRP00000009539/1-1044 FSEGLMKPPP KPTVPSRPIA PA-PSTLSLP PKLPGQVTVT MESSIPQAAA ENSP00000350333/1-1083 FSEGLMKPPP KPTMPSRPIA PAPPSTLSLP PKVPGQVTVT MESSIPQASA ENSBTAP00000047415/1-1080 FSEGLMKPPP KPTMPSRPIA PAPPSALSLP PKVPGQVTVT MESSIPQASA BACU009916/1-1057 FSEGLMKPPP KPTMPSRPIA PAPPSTLSLP PKVPGQVTVT MESSIPQASA 201 250 bmy_10453T0/1-897 IPVATISGQQ GHPSNLHHIM TTNVQMSIIR SNAPGPPLHI GASHLPRGPV ENSTTRP00000009539/1-1044 IPVATISGQQ GHPSNLHHIM TTNVQMSIIR SNAPGPPLHI GASHLPRGAA ENSP00000350333/1-1083 IPVATISGQQ GHPSNLHHIM TTNVQMSIIR SNAPGPPLHI GASHLPRGAA ENSBTAP00000047415/1-1080 IPVATISGQQ GHPSNLHHIM TTNVQMSIIR SNAPGPPLHI GASHLPRGAA BACU009916/1-1057 IPVATISGQQ GHPSNLHHIM TTNVQMSIIR SNAPGPPLHI GASHLPRGAA 251 300 bmy_10453T0/1-897 FILYLK---- --CFWPT--- ---------- ---------S RPPVTTSNTI ENSTTRP00000009539/1-1044 AAAVMSSSKV TTVLRPTSQL PNAAAAQPAV QHIIHQPIQS RPPVTTSNTI ENSP00000350333/1-1083 AAAVMSSSKV TTVLRPTSQL PNAATAQPAV QHIIHQPIQS RPPVTTSNAI ENSBTAP00000047415/1-1080 AAAVMSSSKV TTVLRPTSQL PNAAAAQPAV QHIIHQPIQS RPPVTTSNTI BACU009916/1-1057 AAAVMSSSKV TTVLRPTSQL PNAAAAQPAV QHIIHQPIQS RPPVTTSNTI 301 350 bmy_10453T0/1-897 PPAVVATVSA TRAQSPVITT TAAHATDSAL SRPTLSLQHP PSAAISIQRP ENSTTRP00000009539/1-1044 PPAVVATVSA TRAQSPVITT TAAHATDSAL SRPTLSLQHP PSAAISIQRP ENSP00000350333/1-1083 PPAVVATVSA TRAQSPVITT TAAHATDSAL SRPTLSIQHP PSAAISIQRP ENSBTAP00000047415/1-1080 PPAVVATVSA TRAQSPVITT TAAHATDSTL SRPTLSLQHP PSAAISIQRP BACU009916/1-1057 PPAVVATVSA TRAQSPVITT TAAHATDSAL SRPALSLQHP PSAAISIQRP 351 400 bmy_10453T0/1-897 AQSRDVTTRI TLPSHPALGT PKQQLHTMAQ KTIFSTGTPV AAATVAPILA ENSTTRP00000009539/1-1044 AQSRDVTTRI TLPSHPALGT PKQQLHTMAQ KTIFSTGTPV AAATVAPILA ENSP00000350333/1-1083 AQSRDVTTRI TLPSHPALGT PKQQLHTMAQ KTIFSTGTPV AAATVAPILA ENSBTAP00000047415/1-1080 AQSRDVTTRI TLPSHPALGT PKQQLHTMAQ KTIFSTGTPV AAATVAPILA BACU009916/1-1057 AQSRDVTTRI TLPSHPALGT PKQQLHTMAQ KTIFSTGTPV AAATVAPILA 401 450 bmy_10453T0/1-897 TNTIPSATTA GSVSHTQAPT STIVTMTMPS HSSHATAVTT SNIPVAKVVP ENSTTRP00000009539/1-1044 TNTIPSATTA GSVSHTQAPT STIVTMTMPS HSSHATAVTT SNIPVAKVVP ENSP00000350333/1-1083 TNTIPSATTA GSVSHTQAPT STIVTMTVPS HSSHATAVTT SNIPVAKVVP ENSBTAP00000047415/1-1080 TNTIPSATTA GSVSHTQAPT STIVTMTMPS HSSHATAVTT SNIPVAKVVP BACU009916/1-1057 TNTIPSATTA GSVSHTQAPT STIVTMTMPS HSSHATAVTT SNIPVAKVVP 451 500 bmy_10453T0/1-897 QQITHTSPRI QPDYPAERSS LIPISGHRAS PNPVAMETRS DNRPSVPVQF ENSTTRP00000009539/1-1044 QQITHTSPRI QPDYPAERSS LIPISGHRAS PNPVAMETRS DNRPSVPVQF ENSP00000350333/1-1083 QQITHTSPRI QPDYPAERSS LIPISGHRAS PNPVAMETRS DNRPSVPVQF ENSBTAP00000047415/1-1080 QQITHTSPRI QPDYPAERSS LIPISGHRAS PNPVAMETRS DNRPSVPVQF BACU009916/1-1057 QQITHTSPRI QADYPAERSS LIPISGHRAS PNPVAMETRS DNRPSVPVQF 501 550 bmy_10453T0/1-897 QYFLPTYPPS AYPLAAHTYT PITSSVSTIR QYPVSAQAPN SAITAQTGVG ENSTTRP00000009539/1-1044 QYFLPTYPPS AYPLAAHTYT PITSSVSTIR QYPVSAQAPN SAITAQTGVG ENSP00000350333/1-1083 QYFLPTYPPS AYPLAAHTYT PITSSVSTIR QYPVSAQAPN SAITAQTGVG ENSBTAP00000047415/1-1080 QYFLPTYPPS AYPLAAHTYT PITSSVSTIR QYPVSAQAPN SAITAQTGVG BACU009916/1-1057 QYFLPTYPPS AYPLAAHTYT PITSSVSTIR QYPVSAQAPN SAITAQTGVG 551 600 bmy_10453T0/1-897 VASTVHLNPM QLMTVDASHA RHIQGIQPAP IT-------- ---------- ENSTTRP00000009539/1-1044 VASTVHLNPM QLMTVDASHA RHIQGIQPAP ISTQGIQPAP IGTPGIQPAP ENSP00000350333/1-1083 VASTVHLNPM QLMTVDASHA RHIQGIQPAP ISTQGIQPAP IGTPGIQPAP ENSBTAP00000047415/1-1080 VASTVHLNPM QLMTVDASHA RHIQGIQPAP ISTQGIQPAP IGTPGIQPAP BACU009916/1-1057 VASTVHLNPM QLMTVDASHA RHIQGIQPAP ISTQGIQPAP IGTPGIQPAP 601 650 bmy_10453T0/1-897 ---------- ---------- ---------- -----VVLAD GATIVANPIS ENSTTRP00000009539/1-1044 IGTQGIHSAT PISTQGLQPA PIGTQQPQPE GKTSAVVLAD GATIVANPLS ENSP00000350333/1-1083 LGTQGIHSAT PINTQGLQPA PMGTQQPQPE GKTSAVVLAD GATIVANPIS ENSBTAP00000047415/1-1080 IGTQGIHSAT PISTQGLQPA PIGTQQPQPE GKTSAVVLAD GATIVANPIS BACU009916/1-1057 IGTQGIHSAT PISTQGLQPA PIGTQQPQPE GKTSAVVLAD GATIVANPVS 651 700 bmy_10453T0/1-897 SPFSAAPAAT TVVQTHSQSA STNAPAQGSS PRPSILRKKP ATDGM-AVRK ENSTTRP00000009539/1-1044 NPFSAAPAAT TVVQTHSQSA STNAPAQGSS PRPSILRKKP ATD------- ENSP00000350333/1-1083 NPFSAAPAAT TVVQTHSQSA STNAPAQGSS PRPSILRKKP ATDGM-AVRK ENSBTAP00000047415/1-1080 NPFSAAPAAT TVVQTHSQSV STNAPAQGSS PRPSILRKKP ATDGKWAVRK BACU009916/1-1057 NPFSAAPAAT TVVQTHSQSA STNAPAQGSS PRPSILRKKP ATDGM-AVRK 701 750 bmy_10453T0/1-897 TLIPPQPPEV ASPRVESSMR STSGSPRPAG AKPKSEIHVS MATPVTVSME ENSTTRP00000009539/1-1044 ---------- ---------- ---------G AKPKSEIHVS MATPVTVSME ENSP00000350333/1-1083 TLIPPQPPDV ASPRVESSMR STSGSPRPAG AKPKSEIHVS MATPVTVSME ENSBTAP00000047415/1-1080 TLIPPQPPDV ASPRVESSMR STSGSPRPAG AKPKSEIHVS MATPVTVSME BACU009916/1-1057 TLIPPQPPEV ASPRVESSMR STSGSPRPAG AKPKSEIHVS MATPVTVSME 751 800 bmy_10453T0/1-897 TMSNQNNDQP TVAVPPTAQQ PPPAIPTMIA AASPPSQPAV ALPTIPGAVP ENSTTRP00000009539/1-1044 TISNQNNDQP TVAVPPTAQQ PPPAIPTMIA AASPPSQPAV ALPTIPGAVP ENSP00000350333/1-1083 TVSNQNNDQP TIAVPPTAQQ PPPTIPTMIA AASPPSQPAV ALSTIPGAVP ENSBTAP00000047415/1-1080 TMSSQNSDQP TIAVPPTTQQ PPPAIPTMIA AASPPSQPAV ALPTIPGAVP BACU009916/1-1057 TMSNQNNDQP TVAVPPTAQQ PPPAIPTMIA AASPPSQPAV ALPTIPGAVP 801 850 bmy_10453T0/1-897 VTPPITTIAT APPPPVAVGS SLSSVLGPPV PEIKVKEEVE PVDIMRPVSA ENSTTRP00000009539/1-1044 VTPPITTIAT APPPPVAVGS SLSSVLGPPV PEIKVKEEVE PVDIMRPVSA ENSP00000350333/1-1083 ITPPITTIAA APPPSVTVGG SLSSVLGPPV PEIKVKEEVE PMDIMRPVSA ENSBTAP00000047415/1-1080 ITPPITTIAA APPPSAAVGG SLSSVLGPPV PEIKVKEEVE PMDIMRPVSA BACU009916/1-1057 VTPPITTIAT APPPPVAVGS SLSSVLGPPV PEIKVKEEVE PVDIMRPVSA 851 900 bmy_10453T0/1-897 VPPLATNSVS PSLALLANNL SMPTSDLPPG ASPRKKPRKQ QHVISTEEGD ENSTTRP00000009539/1-1044 VPPLATNSVS PSLALLANNL SMPTSDLPPG ASPRKKPRKQ QHVISTEEGD ENSP00000350333/1-1083 VPPLATNTVS PSLALLANNL SMPTSDLPPG ASPRKKPRKQ QHVISTEEGD ENSBTAP00000047415/1-1080 VPPLATNTVS PSLALLANNL SMPTSDLPPG ASPRKKPRKQ QHVISTEEGD BACU009916/1-1057 VPPLATNSVS PSLALLANNL SMPTSDLPPG ASPRKKPRKQ QHVISTEEGD 901 950 bmy_10453T0/1-897 MMETNSTDDE KSTAKSLLVK AEKRKSPPKE YIDEEGVRYV PVRPRPPITL ENSTTRP00000009539/1-1044 MMETNSTDDE KSTAKSLLVK AEKRKSPPKE YIDEEGVRYV PVRPRPPITL ENSP00000350333/1-1083 MMETNSTDDE KSTAKSLLVK AEKRKSPPKE YIDEEGVRYV PVRPRPPITL ENSBTAP00000047415/1-1080 MMETNSTDDE KSTAKSLLVK AEKRKSPPKE YIDEEGVRYV PVRPRPPITL BACU009916/1-1057 MMETNSTDDE KSTAKSLLVK AEKRKSPPKE YIDEEGVRYV PVRPRPPITL 951 1000 bmy_10453T0/1-897 LRHYRNPWKA AYHHFQRYSD VRVKGQFPQK CLVLTLAMGL SLSY------ ENSTTRP00000009539/1-1044 LRHYRNPWKA AYHHFQRYSD VRVK--EEKK AMLQEIANQK GVSCRAQGWK ENSP00000350333/1-1083 LRHYRNPWKA AYHHFQRYSD VRVK--EEKK AMLQEIANQK GVSCRAQGWK ENSBTAP00000047415/1-1080 LRHYRNPWKA AYHHFQRYSD VRVKVPEEKK AMLQEIANQK GVSCRAQGWK BACU009916/1-1057 LRHYRNPWKA AYHHFQRYSD VRVK--EEKK AMLQEIANQK GVSCRAQGWK 1001 1050 bmy_10453T0/1-897 --------IE ITTIQLSIKF GKLSFASESY V--------- -------YFT ENSTTRP00000009539/1-1044 VHLCAAQLLQ LTNLEHDV-Y ERLTNLQEGI IPKKKAATDD DLHRINELIQ ENSP00000350333/1-1083 VHLCAAQLLQ LTNLEHDV-Y ERLTNLQEGI IPKKKAATDD DLHRINELIQ ENSBTAP00000047415/1-1080 VHLCAAQLLQ LTNLEHDV-Y ERLTNLQEGI IPKKKAATDD DLHRINELIQ BACU009916/1-1057 VHLCAAQLLQ LTNLEHDV-Y ERLTNLQEGI IPKKKAATDD DLHRINELIQ 1051 1100 bmy_10453T0/1-897 GNTV------ ---------- ---------- ---------- ---------- ENSTTRP00000009539/1-1044 GNMLRCKLVK DQIRDVPYSL LMVLYHKDRV -KLLNKNGTV KKVSKLKRKE ENSP00000350333/1-1083 GNMQRCKLVM DQISEARDSM LKVLDHKDRV LKLLNKNGTV KKVSKLKRKE ENSBTAP00000047415/1-1080 GNMQRCKLVM DQISEARDSM LKVLDHKDRV LKLLNKNGTV KKVSKLKRKE BACU009916/1-1057 GNMQRCKLVM DQISEARDSM LKVLDHKDRV LKLLNKNGTV KKVSKLKRKE 1101 1150 bmy_10453T0/1-897 -- ENSTTRP00000009539/1-1044 KV ENSP00000350333/1-1083 KV ENSBTAP00000047415/1-1080 KV BACU009916/1-1057 KV