KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:58:11 2014 Check: 00 ..
Name: ENSP00000380675/1-567 Len: 701 Check: 8402 Weight: 1.00
Name: ENSTTRP00000009461/1-569 Len: 701 Check: 4392 Weight: 1.00
Name: ENSBTAP00000047446/1-566 Len: 701 Check: 1652 Weight: 1.00
Name: bmy_18820T0/1-551 Len: 701 Check: 7979 Weight: 1.00
Name: BACU006731/1-697 Len: 701 Check: 1460 Weight: 1.00
//
1 50
ENSP00000380675/1-567 MDDKDIDKEL RQKLNFSYCE ET-EIEGQKK VEESREASSQ TPEKGEVQDS
ENSTTRP00000009461/1-569 MGDNDEDKEL KQKLNFSSCE EEHENEGQKE TQESKEPQSQ TPEKPGAQDS
ENSBTAP00000047446/1-566 MGDHNENKEL KQKLNFSCCE EEHENKGQEE AQESEEAQTQ TPERPRGQDS
bmy_18820T0/1-551 MGDNDEDKEP KQKLSFSSCE EEHENEGQKE AQESKEAQSQ TPEKSGVQDS
BACU006731/1-697 MGDNDEDKEL KQKLSFSSCE EEHENEGQKE AQESKEAQSQ TPERSGVQDS
51 100
ENSP00000380675/1-567 ----EAKGTP PWTPLSNVHE LDTSSEKDKE SPDQILRTPV SHPLKCPET-
ENSTTRP00000009461/1-569 GSVQAAELTP VRTPLSDVRD LNTFQEKGQA SPGQGLRTPV SHSLTRPET-
ENSBTAP00000047446/1-566 ----EVKLTP PRTPLGNEYD LSALYERDQA SPDQGLRTPV SHSLARPETP
bmy_18820T0/1-551 GCVQEAELTP LRTPLSNVRD LNTFQEKDQA SPGQGLRTPV SHSLTRPET-
BACU006731/1-697 GCVQEAELTP LRTPLSNVRD LNTFQEKDQA SPGQGLRTPV SHSLTRPET-
101 150
ENSP00000380675/1-567 PAQPDSRSKL LPSDSPSTPK TMLSRLVISP TGKLPSRGPK HLKLTPAPLK
ENSTTRP00000009461/1-569 PAPPD-KGKP PRCESPFTPK XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSBTAP00000047446/1-566 PAPPD-KSGP SHCESPFTPK GQVSQSMISS TGKPLPRSSK HLKLTPGPFI
bmy_18820T0/1-551 PAPPD-KGKP PRCESPFTPK GQVSQPVISS TGKLPSRSSK HLKLTPGPFT
BACU006731/1-697 PAPPD-KGKP PCCESPFTPK GQVSQPVISS TGKLPSRSSK HLKLTPSPFT
151 200
ENSP00000380675/1-567 DEMTSLALVN INPFTPESYK KLFLQSGGKR KIRGDLEEAG PEEGKG--GL
ENSTTRP00000009461/1-569 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX--XX
ENSBTAP00000047446/1-566 DEMTSLALVN INPFTPESYR KQFLKSNGKR KTRGDLEESS PGEGKGEQGL
bmy_18820T0/1-551 DEMTSLALVN INPFTPESYR KQFLKSNGKR KTRGDL---- ----------
BACU006731/1-697 DEMTSLALVN INPFTPESYR KQFLKSNGKR KTRGDLEEAG PGEGKVEQGL
201 250
ENSP00000380675/1-567 PAKRCVLRET NMASRYEKEF LEVEKIGVGE FGTVYKCIKR LDGCVYAIKR
ENSTTRP00000009461/1-569 XXXRCVLRET NMASRYEKEF LEVEKIGVGE FGTVYKCIKR LDGCVYAIKR
ENSBTAP00000047446/1-566 PAKRCVLRET NMASRYEKEF LEVEKIGVGD FGTVYKCIKR LDGCVYAIKR
bmy_18820T0/1-551 ----CVLRET NMASRYEKEF LEVEKIGVGE FGTVYKCIKR LDGCVYAIKR
BACU006731/1-697 PAKRCVLRET NMASRYEKEF LEVEKIGVGE FGTVYKCIKR LDGCVYAIKR
251 300
ENSP00000380675/1-567 SMKTFTELSN ENSALHEVYA HAVLGHHPHV VRYYSSWAED DHMIIQNEYC
ENSTTRP00000009461/1-569 STKPLVGSSD ENLAMHEVYA HAVLGHHPHV VRYYSAWAED DHMVIQNEYC
ENSBTAP00000047446/1-566 STKPLGGLSD ETLAMHEVYA HAVLGQHPHV VRYYSAWAED DYMIIQNEYC
bmy_18820T0/1-551 STKPLVGSSD ENLAMHEVYA HAVLGHHPHV VRYYSAWAED DHMIIQNEYC
BACU006731/1-697 STKPLVGSSD ENLAMHEVYA HAVLGHHPHV VRYYSAWAED DHMIIQNEYC
301 350
ENSP00000380675/1-567 NGGSLQAAIS ENTKSGNHFE EPKLKDILLQ ISLGLNYIHN SSMVHLDIKP
ENSTTRP00000009461/1-569 NGGSLQAAIS ENAKSGNHFQ ECKLKDILLQ ISLGLKYIHN SGMAHLDIKP
ENSBTAP00000047446/1-566 NGGSLQAAVT ENTKSGSHFP EPRLKDILLQ ISLGLKYIHS SGMVHLDIKP
bmy_18820T0/1-551 NGGSLQAAIS ENTKSGNHFQ ECKLKDILLQ ISLGLKYIHN SGMVHLDIKP
BACU006731/1-697 NGGSLQAAIS ENTKSGNHFQ ECKLKDILLQ ISLGLKYIHS SGMVHLDIKP
351 400
ENSP00000380675/1-567 SNIFICHKMQ SESSGVIEEV ENEADWFLSA NVMYKIGDLG HATSINKPKV
ENSTTRP00000009461/1-569 SNIFICHKMQ SDSPVVPEEI ENEADWFLSA NVMYKIGDLG HVTSISKPKV
ENSBTAP00000047446/1-566 SNIFICHKMQ SDSPVVLEEA ENEADWFFSA DVMYKIGDLG HVTSISNPKV
bmy_18820T0/1-551 SNIFICHKMQ SDSPVVPEEI ENEADWFLSA NVMYKIGDLG HVTSISKPKV
BACU006731/1-697 SNIFICHKMQ SDSPVVPEEI ENEADWFLSA NVMYKIGDLG HVTSISKPKV
401 450
ENSP00000380675/1-567 EEGDSRFLAN EILQEDYRHL PKADIFALGL TIAVAAGAES LPTNGAAWHH
ENSTTRP00000009461/1-569 EEGDSRFLAN EILQENYQHL PKADIFALGL TIAVAAGAES LPTNGAAWHH
ENSBTAP00000047446/1-566 EEGDSRFLAN EILQENYQHL PKADIFALGL TIAVAAGAEL LPTNGTEWHH
bmy_18820T0/1-551 EEGDSRFLAN EILQENYQHL PKADIFALGL TIALAAGAES LPTNGAAWHH
BACU006731/1-697 EEGDSRFLAN EILQENYQHL PKADIFALGL TVALAAGAES LPTNGAAWHH
451 500
ENSP00000380675/1-567 IRKGNFPDVP QELSESFSSL LKNMIQPDAE QRPSAAALAR NTVLRPSLGK
ENSTTRP00000009461/1-569 IREGNLPDIP QELSKEFHQL LKNMIHPDPA ERPSAAALAK SRVLCPSLGK
ENSBTAP00000047446/1-566 IREGNLPDIP QELSKEFHQL LESMIHPDPA ERPSAAALAK SRVLCPSLGK
bmy_18820T0/1-551 IREGNLPDIP QELSKEFYQL LKNMIHPDPA ERPSAAALAK SRVLCPSLGK
BACU006731/1-697 IREGNLPDMP QELSKEFHQL LKNMIHPDPA ERPSAAALAK SRVLCPSLGK
501 550
ENSP00000380675/1-567 TEELQQQLNL EKFKTATLER ELREAQQAQS PQGYTHHGDT GVSGTHTGSR
ENSTTRP00000009461/1-569 TEELQQQLNL EKFKTATLER ELKEAQQAQS PKEC--HSVP GVSGTPTGSR
ENSBTAP00000047446/1-566 TEELQHQLNL EKFKTATLQR ELKEAQQAQS PKDG--HSVP GVSDTPTGLR
bmy_18820T0/1-551 TEELQQQLNL EKFKTATLER ELKEAQQAQS PKEC--HSVP GVSGTPTGSR
BACU006731/1-697 TEELQQQLNL EKFKTATLER ELKEAQQAQS PKEC--HSVP GVSGTPTGSR
551 600
ENSP00000380675/1-567 STKRL----- ---------- ---------- -----VG--- ------GKSA
ENSTTRP00000009461/1-569 STKRL----- ---------- ---------- -----VG--- ------GKSA
ENSBTAP00000047446/1-566 NAKCL----- ---------- ---------- -----VG--- ------GKSA
bmy_18820T0/1-551 STKRL----- ---------- ---------- -----VG--- ------GKSA
BACU006731/1-697 STKRLVLHQF VRHESEIAGS LVLERSLNRV QLLGRVGQDP VMRQVEGKNP
601 650
ENSP00000380675/1-567 ---------- ---------- ----RSSSFT SGEREPLH-- ----------
ENSTTRP00000009461/1-569 ---------- ---------- ----KSSSFT SGKHGPLN-- ----------
ENSBTAP00000047446/1-566 ---------- ---------- ----KSSSFT SGQTSP---- ----------
bmy_18820T0/1-551 ---------- ---------- ----KSSSFT WGQSSP---- ----------
BACU006731/1-697 VTIFSLATNE MWRSGENETH QMGDVSQKTT WHRISVFRPG LRDVAYQHVK
651 700
ENSP00000380675/1-567 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000009461/1-569 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000047446/1-566 ---------- ---------- ---------- ---------- ----------
bmy_18820T0/1-551 ---------- ---------- ---------- ---------- ----------
BACU006731/1-697 KGSRIYVEGK VDYGEYMDKN NVRRQATTII AGKALVIITI LFFFFFPPFL
701 750
ENSP00000380675/1-567 -
ENSTTRP00000009461/1-569 -
ENSBTAP00000047446/1-566 -
bmy_18820T0/1-551 -
BACU006731/1-697 F