KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:11 2014 Check: 00 .. Name: ENSP00000380675/1-567 Len: 701 Check: 8402 Weight: 1.00 Name: ENSTTRP00000009461/1-569 Len: 701 Check: 4392 Weight: 1.00 Name: ENSBTAP00000047446/1-566 Len: 701 Check: 1652 Weight: 1.00 Name: bmy_18820T0/1-551 Len: 701 Check: 7979 Weight: 1.00 Name: BACU006731/1-697 Len: 701 Check: 1460 Weight: 1.00 // 1 50 ENSP00000380675/1-567 MDDKDIDKEL RQKLNFSYCE ET-EIEGQKK VEESREASSQ TPEKGEVQDS ENSTTRP00000009461/1-569 MGDNDEDKEL KQKLNFSSCE EEHENEGQKE TQESKEPQSQ TPEKPGAQDS ENSBTAP00000047446/1-566 MGDHNENKEL KQKLNFSCCE EEHENKGQEE AQESEEAQTQ TPERPRGQDS bmy_18820T0/1-551 MGDNDEDKEP KQKLSFSSCE EEHENEGQKE AQESKEAQSQ TPEKSGVQDS BACU006731/1-697 MGDNDEDKEL KQKLSFSSCE EEHENEGQKE AQESKEAQSQ TPERSGVQDS 51 100 ENSP00000380675/1-567 ----EAKGTP PWTPLSNVHE LDTSSEKDKE SPDQILRTPV SHPLKCPET- ENSTTRP00000009461/1-569 GSVQAAELTP VRTPLSDVRD LNTFQEKGQA SPGQGLRTPV SHSLTRPET- ENSBTAP00000047446/1-566 ----EVKLTP PRTPLGNEYD LSALYERDQA SPDQGLRTPV SHSLARPETP bmy_18820T0/1-551 GCVQEAELTP LRTPLSNVRD LNTFQEKDQA SPGQGLRTPV SHSLTRPET- BACU006731/1-697 GCVQEAELTP LRTPLSNVRD LNTFQEKDQA SPGQGLRTPV SHSLTRPET- 101 150 ENSP00000380675/1-567 PAQPDSRSKL LPSDSPSTPK TMLSRLVISP TGKLPSRGPK HLKLTPAPLK ENSTTRP00000009461/1-569 PAPPD-KGKP PRCESPFTPK XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000047446/1-566 PAPPD-KSGP SHCESPFTPK GQVSQSMISS TGKPLPRSSK HLKLTPGPFI bmy_18820T0/1-551 PAPPD-KGKP PRCESPFTPK GQVSQPVISS TGKLPSRSSK HLKLTPGPFT BACU006731/1-697 PAPPD-KGKP PCCESPFTPK GQVSQPVISS TGKLPSRSSK HLKLTPSPFT 151 200 ENSP00000380675/1-567 DEMTSLALVN INPFTPESYK KLFLQSGGKR KIRGDLEEAG PEEGKG--GL ENSTTRP00000009461/1-569 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX--XX ENSBTAP00000047446/1-566 DEMTSLALVN INPFTPESYR KQFLKSNGKR KTRGDLEESS PGEGKGEQGL bmy_18820T0/1-551 DEMTSLALVN INPFTPESYR KQFLKSNGKR KTRGDL---- ---------- BACU006731/1-697 DEMTSLALVN INPFTPESYR KQFLKSNGKR KTRGDLEEAG PGEGKVEQGL 201 250 ENSP00000380675/1-567 PAKRCVLRET NMASRYEKEF LEVEKIGVGE FGTVYKCIKR LDGCVYAIKR ENSTTRP00000009461/1-569 XXXRCVLRET NMASRYEKEF LEVEKIGVGE FGTVYKCIKR LDGCVYAIKR ENSBTAP00000047446/1-566 PAKRCVLRET NMASRYEKEF LEVEKIGVGD FGTVYKCIKR LDGCVYAIKR bmy_18820T0/1-551 ----CVLRET NMASRYEKEF LEVEKIGVGE FGTVYKCIKR LDGCVYAIKR BACU006731/1-697 PAKRCVLRET NMASRYEKEF LEVEKIGVGE FGTVYKCIKR LDGCVYAIKR 251 300 ENSP00000380675/1-567 SMKTFTELSN ENSALHEVYA HAVLGHHPHV VRYYSSWAED DHMIIQNEYC ENSTTRP00000009461/1-569 STKPLVGSSD ENLAMHEVYA HAVLGHHPHV VRYYSAWAED DHMVIQNEYC ENSBTAP00000047446/1-566 STKPLGGLSD ETLAMHEVYA HAVLGQHPHV VRYYSAWAED DYMIIQNEYC bmy_18820T0/1-551 STKPLVGSSD ENLAMHEVYA HAVLGHHPHV VRYYSAWAED DHMIIQNEYC BACU006731/1-697 STKPLVGSSD ENLAMHEVYA HAVLGHHPHV VRYYSAWAED DHMIIQNEYC 301 350 ENSP00000380675/1-567 NGGSLQAAIS ENTKSGNHFE EPKLKDILLQ ISLGLNYIHN SSMVHLDIKP ENSTTRP00000009461/1-569 NGGSLQAAIS ENAKSGNHFQ ECKLKDILLQ ISLGLKYIHN SGMAHLDIKP ENSBTAP00000047446/1-566 NGGSLQAAVT ENTKSGSHFP EPRLKDILLQ ISLGLKYIHS SGMVHLDIKP bmy_18820T0/1-551 NGGSLQAAIS ENTKSGNHFQ ECKLKDILLQ ISLGLKYIHN SGMVHLDIKP BACU006731/1-697 NGGSLQAAIS ENTKSGNHFQ ECKLKDILLQ ISLGLKYIHS SGMVHLDIKP 351 400 ENSP00000380675/1-567 SNIFICHKMQ SESSGVIEEV ENEADWFLSA NVMYKIGDLG HATSINKPKV ENSTTRP00000009461/1-569 SNIFICHKMQ SDSPVVPEEI ENEADWFLSA NVMYKIGDLG HVTSISKPKV ENSBTAP00000047446/1-566 SNIFICHKMQ SDSPVVLEEA ENEADWFFSA DVMYKIGDLG HVTSISNPKV bmy_18820T0/1-551 SNIFICHKMQ SDSPVVPEEI ENEADWFLSA NVMYKIGDLG HVTSISKPKV BACU006731/1-697 SNIFICHKMQ SDSPVVPEEI ENEADWFLSA NVMYKIGDLG HVTSISKPKV 401 450 ENSP00000380675/1-567 EEGDSRFLAN EILQEDYRHL PKADIFALGL TIAVAAGAES LPTNGAAWHH ENSTTRP00000009461/1-569 EEGDSRFLAN EILQENYQHL PKADIFALGL TIAVAAGAES LPTNGAAWHH ENSBTAP00000047446/1-566 EEGDSRFLAN EILQENYQHL PKADIFALGL TIAVAAGAEL LPTNGTEWHH bmy_18820T0/1-551 EEGDSRFLAN EILQENYQHL PKADIFALGL TIALAAGAES LPTNGAAWHH BACU006731/1-697 EEGDSRFLAN EILQENYQHL PKADIFALGL TVALAAGAES LPTNGAAWHH 451 500 ENSP00000380675/1-567 IRKGNFPDVP QELSESFSSL LKNMIQPDAE QRPSAAALAR NTVLRPSLGK ENSTTRP00000009461/1-569 IREGNLPDIP QELSKEFHQL LKNMIHPDPA ERPSAAALAK SRVLCPSLGK ENSBTAP00000047446/1-566 IREGNLPDIP QELSKEFHQL LESMIHPDPA ERPSAAALAK SRVLCPSLGK bmy_18820T0/1-551 IREGNLPDIP QELSKEFYQL LKNMIHPDPA ERPSAAALAK SRVLCPSLGK BACU006731/1-697 IREGNLPDMP QELSKEFHQL LKNMIHPDPA ERPSAAALAK SRVLCPSLGK 501 550 ENSP00000380675/1-567 TEELQQQLNL EKFKTATLER ELREAQQAQS PQGYTHHGDT GVSGTHTGSR ENSTTRP00000009461/1-569 TEELQQQLNL EKFKTATLER ELKEAQQAQS PKEC--HSVP GVSGTPTGSR ENSBTAP00000047446/1-566 TEELQHQLNL EKFKTATLQR ELKEAQQAQS PKDG--HSVP GVSDTPTGLR bmy_18820T0/1-551 TEELQQQLNL EKFKTATLER ELKEAQQAQS PKEC--HSVP GVSGTPTGSR BACU006731/1-697 TEELQQQLNL EKFKTATLER ELKEAQQAQS PKEC--HSVP GVSGTPTGSR 551 600 ENSP00000380675/1-567 STKRL----- ---------- ---------- -----VG--- ------GKSA ENSTTRP00000009461/1-569 STKRL----- ---------- ---------- -----VG--- ------GKSA ENSBTAP00000047446/1-566 NAKCL----- ---------- ---------- -----VG--- ------GKSA bmy_18820T0/1-551 STKRL----- ---------- ---------- -----VG--- ------GKSA BACU006731/1-697 STKRLVLHQF VRHESEIAGS LVLERSLNRV QLLGRVGQDP VMRQVEGKNP 601 650 ENSP00000380675/1-567 ---------- ---------- ----RSSSFT SGEREPLH-- ---------- ENSTTRP00000009461/1-569 ---------- ---------- ----KSSSFT SGKHGPLN-- ---------- ENSBTAP00000047446/1-566 ---------- ---------- ----KSSSFT SGQTSP---- ---------- bmy_18820T0/1-551 ---------- ---------- ----KSSSFT WGQSSP---- ---------- BACU006731/1-697 VTIFSLATNE MWRSGENETH QMGDVSQKTT WHRISVFRPG LRDVAYQHVK 651 700 ENSP00000380675/1-567 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009461/1-569 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047446/1-566 ---------- ---------- ---------- ---------- ---------- bmy_18820T0/1-551 ---------- ---------- ---------- ---------- ---------- BACU006731/1-697 KGSRIYVEGK VDYGEYMDKN NVRRQATTII AGKALVIITI LFFFFFPPFL 701 750 ENSP00000380675/1-567 - ENSTTRP00000009461/1-569 - ENSBTAP00000047446/1-566 - bmy_18820T0/1-551 - BACU006731/1-697 F