KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:13 2014 Check: 00 .. Name: ENSTTRP00000009402/1-1210 Len: 1252 Check: 1595 Weight: 1.00 Name: ENSP00000475456/1-1208 Len: 1252 Check: 8261 Weight: 1.00 Name: ENSBTAP00000047517/1-1218 Len: 1252 Check: 3974 Weight: 1.00 Name: bmy_07551T0/1-1015 Len: 1252 Check: 9893 Weight: 1.00 Name: BACU011404/1-1145 Len: 1252 Check: 4961 Weight: 1.00 // 1 50 ENSTTRP00000009402/1-1210 MEQLRDVRER VQAWGRAFRR RSGRLPGQEN VEAAPEETRA LHRDYRTLKE ENSP00000475456/1-1208 MERLRDVRER LQAWERAFRR QRGRRPSQDD VEAAPEETRA LYREYRTLKR ENSBTAP00000047517/1-1218 MERLRDVREL LQAWERAFRR QSGRRPGKED VEAAPEETRA LYREYRSLKK bmy_07551T0/1-1015 ---------- ---------- ---------- ---------- ---------- BACU011404/1-1145 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009402/1-1210 ALGQAGGVGP HGSEQSLPAA AAEEXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000475456/1-1208 TTGQAGG--G LRSSESLPAA AEEAPEPRCW GPHLNRAATK SPQSTPGRSR ENSBTAP00000047517/1-1218 ALGQAGGVEP HGSGQSLPVA AEQMLEPSCW GHHLNRAATQ SPHPPSRWSP bmy_07551T0/1-1015 ---------- ---------- ---------- ---------- ---------- BACU011404/1-1145 ---------- ---------- ---MLEPSCW GPHLNRAATQ SPHPPSRLSS 101 150 ENSTTRP00000009402/1-1210 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000475456/1-1208 QGSVPDYGQR LKANLKGTLQ AGPALGRRPW PLGRASSKAS TPKPPGTGPV ENSBTAP00000047517/1-1218 QESAQDYGKR LKANLKGSLQ ARSTLGRIPR LAQRSSSKIP SPEPSGTAAA bmy_07551T0/1-1015 ---------- ---------- ---------- --------MP SPGPPGTGAA BACU011404/1-1145 QGAVQDYGKR LKANLKGSLQ AGPALGRIPR LTRRSSSKMP SPGPPGTGAA 151 200 ENSTTRP00000009402/1-1210 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000475456/1-1208 PSFAEKVSDE PPQLPEPQPR PGRLQHLQAS LSQRLGSLDP GWLQRCHSEV ENSBTAP00000047517/1-1218 PISPENVNEV LPQPPRPQLR PGRLQQLRAS LSLRLGSLDP DWLQRCHNRT bmy_07551T0/1-1015 TVSPEEVSEV PPQPPRPQLR PGRPQQLRAS LSLRLGSLDP GWLQRCHNGT BACU011404/1-1145 TISPEEVSEV PPQPPRPQLR PGRPQQLRAS LSLRLGSLDP GWLQRCHNGT 201 250 ENSTTRP00000009402/1-1210 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000475456/1-1208 PDFLGAPKAC RPDLGSEESQ LLIPGESAVL GPGAGS---- QGPEASAFQE ENSBTAP00000047517/1-1218 PDFLEVPRTC QPGLGAEDSQ LLTPVVESVL SPSAGPEVPL QDPEAPALPA bmy_07551T0/1-1015 PDFLGVPRAC QPCLGTEESQ LLTPGVASVL GPSAGPEVPL QXPEAPTLPA BACU011404/1-1145 PDFLGVPRAC QPCLGTEESQ LLTPGVASVL GPSAGPEVPL QGPEAPTLPA 251 300 ENSTTRP00000009402/1-1210 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000475456/1-1208 VSIRVGSPQP SSSGGEKRRW NEEPWESPAQ VQQESSQAGP PSEGAGAVAV ENSBTAP00000047517/1-1218 AAVSAGKCQP VDRQGKKRRQ SGELEGRLAQ TQQGTDQAGP LPEGAGAAGP bmy_07551T0/1-1015 AGISAGNSQP GTRQGKKRRW SGELEGSPAQ TQQDSGQAGP LPAGAGAAAP BACU011404/1-1145 AGISAGNSQP GTRQGKKRRW SGELEGSPAQ TQKDSGQAGP LPAGAGAAAP 301 350 ENSTTRP00000009402/1-1210 XXXXXXXXXX XXXX------ ---------- ---------- --------XX ENSP00000475456/1-1208 EEDPPGEPVQ AQPPQPCSSP SNPRYHGLSP SSQARAGKAE GTAPLHIFPR ENSBTAP00000047517/1-1218 AEDCPDQPVK AQPP------ ------GRTP A--------- --------SR bmy_07551T0/1-1015 AEDCPEQPVQ AQPP------ ------SKPP A--------- --------PR BACU011404/1-1145 AEDCPEQPVQ AQPP------ ------SKPP A--------- --------PR 351 400 ENSTTRP00000009402/1-1210 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000475456/1-1208 LARHDRGNYV RLNMKQKHYV RGRALRSRLL RKQAWKQKWR KKGECFGGGG ENSBTAP00000047517/1-1218 SAIQDRGNYV RLNMKQRRYV RGRALRGRLL RKQAWKQKWQ KKGECFGGGQ bmy_07551T0/1-1015 RAVRDRGNYV RLNMKQKRYA RGPASRGRLL RKQAWKQKWQ KKRECFGGGQ BACU011404/1-1145 LAVRDRGNYV RLNMKQKRYA RGPASRGRLL RKQVWKQKWQ KKRECFGGGQ 401 450 ENSTTRP00000009402/1-1210 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000475456/1-1208 ATVTTKESCF LNEQFDHWAA QCPRPA---- ---------- ---------- ENSBTAP00000047517/1-1218 PRAPAQDSCS QHGQLSQWAS RCPQPEPLLV PQKD-VKVAD GAQTQPTLQE bmy_07551T0/1-1015 PRATAQDSCS QRGQLSHWAS QCPQPELTLA PQQEGGKDEG GTQTRATFEE BACU011404/1-1145 PRATAQDSCS PCGQLSHWAS QCPQPELTLA PQKEGGKDEG GTQTRATFKE 451 500 ENSTTRP00000009402/1-1210 XXXXXXXXXX XXX-XXXXXX XXXXXXXXXX XXXXXXXXXX X------XXX ENSP00000475456/1-1208 ---------- ----SEEDTD AVGPEPLVPS PQPVPEVPSL DPTVLPLYSL ENSBTAP00000047517/1-1218 ASLRTGAACC QVSAGEEDAE PGAPELLVPT GQSVSRMPCP PLSVPPLYPP bmy_07551T0/1-1015 VSQRMGTACR QLS-GEEHTE PAGPELLVPT GQSVPKAPCP PP-VPPLYPP BACU011404/1-1145 VSQRMGTACR QLS-GEEHTE PAGPELLVPT GQSVPKAPCP PP-VPPLYPP 501 550 ENSTTRP00000009402/1-1210 XXXXXXXXTP AEVLQALEQL GHQAFYPLQE RVVMRILSGV STLLVLPTGA ENSP00000475456/1-1208 GPSGQLAETP AEVFQALEQL GHQAFRPGQE RAVMRILSGI STLLVLPTGA ENSBTAP00000047517/1-1218 GPSGQVADTP AEVFQALEQL GHHAFYPGQE RVVMRVLSGM STLLVLPTGA bmy_07551T0/1-1015 GPLGQVVDTP AEVFQALEQL GHQAFYPLQE RVVMRILSGM STLLVLPTGA BACU011404/1-1145 GPLGQVVDTP AEVFQALEQL GHQAFYPLQE RVVMRILSGM STLLVLPTGA 551 600 ENSTTRP00000009402/1-1210 GKSLCYQLPA LLYFRRSPCL TLVISPLMSL MDNQVSGLPP GLKAVCIHSG ENSP00000475456/1-1208 GKSLCYQLPA LLYSRRSPCL TLVVSPLLSL MDDQVSGLPP CLKAACIHSG ENSBTAP00000047517/1-1218 GKSLCYQLPA LLYFRRSPCL TLVISPLTSL MDDQLSGLPP GLKGACIHSG bmy_07551T0/1-1015 GKSLCYQLPA LLYFRRSPCL TLVVSPLMSL MDNQVSGLPP GLKAVCIHSG BACU011404/1-1145 GKSLCYQLPA LLYFRRSPCL TLVVSPLMSL MDNQVSGLPP GLKAVCIHSG 601 650 ENSTTRP00000009402/1-1210 MTKKERASAL QKVRSAQVQV LMLSPEALVG AGGAALLAQL PLVAFACIDE ENSP00000475456/1-1208 MTRKQRESVL QKIRAAQVHV LMLTPEALVG AGGLPPAAQL PPVAFACIDE ENSBTAP00000047517/1-1218 MTKKQRDSAL QKARAARVQV LMLSPEALVG AGASTLLSQL PPVAFACLDE bmy_07551T0/1-1015 MTKKQRDSAL QKVRSAQVQV LMLSPEALVG AGGAALLTQL PLVAFACIDE BACU011404/1-1145 MTKKQRDSAL QKVRSAQVQV LMLSPEALVG AGGAALLTQL PLVAFACIDE 651 700 ENSTTRP00000009402/1-1210 AHCLSQWSHN FRPCYLRVCQ VLRECVGISC FLGLTATATR SSALDVARHL ENSP00000475456/1-1208 AHCLSQWSHN FRPCYLRVCK VLRERMGVHC FLGLTATATR RTASDVAQHL ENSBTAP00000047517/1-1218 AHCLSQWSHN FRPCYLRVCQ TLRDQMGVHC FLGLTATATR STALDVAWHL bmy_07551T0/1-1015 AHCLSQWSHN FRPCYLRVC- ---------- ---------- ---------- BACU011404/1-1145 AHCLSQWSHN FRPCYLRVCQ VLRECMGIGC FLGLTATATR STALDMARHL 701 750 ENSTTRP00000009402/1-1210 GVAEESILRG PGTIPANLHL SVSSDRDPEQ ALVTLLQSDR FCALDSVIVY ENSP00000475456/1-1208 AVAEEPDLHG PAPVPTNLHL SVSMDRDTDQ ALLTLLQGKR FQNLDSIIIY ENSBTAP00000047517/1-1218 GVTEESVLRG PATIPDNLHL SVSSDRDPDQ ALVTLLRSDR FRALGSVIIY bmy_07551T0/1-1015 ---------- ---------- ---------Q ALVTLLQSDR FRALDSVIVY BACU011404/1-1145 GVAEESILRG PGTIPANLHL SVSSDRDPDQ ALVTLLQSDR FRALDSVIVY 751 800 ENSTTRP00000009402/1-1210 CNRREDTERV AALLRTCLRE AQAPGSRGRA PEAVAEAYHA GMGSRERRRV ENSP00000475456/1-1208 CNRREDTERI AALLRTCLHA AWVPGSGGRA PKTTAEAYHA GMCSRERRRV ENSBTAP00000047517/1-1218 CHRREDTERV AALLRTCLCD AQDPGPHGRA LEAVAEAYHA GLCSRERRRV bmy_07551T0/1-1015 CNKREDTERV SALLRTCLRE ARAPGSRGRA PEAVAEAYHA GMGGRERRRV BACU011404/1-1145 CNRREDTERV SALLRTCLRE ARAPGSRGRA PEAVAEAYHA GMGGRDLRRV 801 850 ENSTTRP00000009402/1-1210 QRAFMEGRLR VVVATVAFGM GLDRPDVRAV LHLGLPPSFE SYVQAVGRAG ENSP00000475456/1-1208 QRAFMQGQLR VVVATVAFGM GLDRPDVRAV LHLGLPPSFE SYVQAVGRAG ENSBTAP00000047517/1-1218 QRAFMEGRLR MVVATVAFGM GLDRPDVRAV LHLGLPPSFE TYVQAVGRAG bmy_07551T0/1-1015 QRAFMEGRLR VVVATVAFGM GLDRPDVRAV LHLGLPPSFE SYVQAVGRAG BACU011404/1-1145 QRAFMEGRLR VVVATVAFGM GLDRPDVRAV LHLGLPPSFE SYVQAVGRAG 851 900 ENSTTRP00000009402/1-1210 RDGQPAQCHV FLRPQXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000475456/1-1208 RDGQPAHCHL FLQPQGEDLR ELRRHVHADS TDFLAVKRLV QRVFPACTCT ENSBTAP00000047517/1-1218 RDGQPAHCHL FLRPQGQDLR ELRRHVHANA VDFFAVKRLV QRVFPPCA-- bmy_07551T0/1-1015 RDGQPAHCHV FLRPQGEDLW ELRRHVHANV IDFLAVKRLV QRVFPPCA-- BACU011404/1-1145 RDGQPAHCHV FLRPQGEDLW ELRRHVHANV IDFLAVKRLV QRVFPPCA-- 901 950 ENSTTRP00000009402/1-1210 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000475456/1-1208 CTRPPSEQEG AVGGERPVPK YPPQEAEQLS HQAAPGPRRV CMGHERALPI ENSBTAP00000047517/1-1218 CARQPPEQEG SRSEEGHLAG APVAASAQDS GQPSVPHTPR CPGHERVLPV bmy_07551T0/1-1015 CTRQPPEQQG DESGERHSAR VLVATSPQDA DHPGLEHTTR CPGHKRALPV BACU011404/1-1145 CTRQPPEQQG DESGERHSGR VLVATSPQDA DHPGLEHTTR CPGHKRALPV 951 1000 ENSTTRP00000009402/1-1210 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000475456/1-1208 QLTVQALDMP EEAIETLLCY LELHPHHWLE LLATTYTHCR LNCPGGPAQL ENSBTAP00000047517/1-1218 QPTVQALDMP EEAIETLLCY LELHPRRWLK LLAPTYARCH LRWPGGPTQL bmy_07551T0/1-1015 QPTVQALDMP EEAIETLLCY LELHPQRWLK LLAPTYACCH LRCPGGPTQL BACU011404/1-1145 QPTVQALDMP EEAIETLLCY LELHPQRWLK LLAPTYACCH LRCPGGPTQL 1001 1050 ENSTTRP00000009402/1-1210 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000475456/1-1208 QALAHRCPPL AVCLAQQLPE DPGQGSSSVE FDMVKLVDSM GWELASVRRA ENSBTAP00000047517/1-1218 QALARRCPPL ALCLAQQHP- DTKQGCSSVE LDLVELADST GWELGPVRRA bmy_07551T0/1-1015 QALARRCPPL AVCLARQCPK KTGGGSSSVE LDVVELADSM GWELAPMRRA BACU011404/1-1145 QALARRCPPL AVCLARQCPK KTGGGSSSVE LDVVELADSM GWELAPTRRA 1051 1100 ENSTTRP00000009402/1-1210 XXXXXXXXXX XXXVPQGTGV LVEFRELAFH LHSPGDLTAQ ERDQICDFLH ENSP00000475456/1-1208 LCQLQWDHEP RTGVRRGTGV LVEFSELAFH LRSPGDLTAE EKDQICDFLY ENSBTAP00000047517/1-1218 LLQLQWDPEP GTGVPQGTGV LVEFRETAFR LHSPGDLTAQ ERDQICDFLH bmy_07551T0/1-1015 LHQLRWDPEP GTGVPRGTGV LVEFRELAFH LHSPGDLTAQ EKDQICDFLH BACU011404/1-1145 LHQLRWDPEP GTGVPRGTGV LVEFRELAFH LHSPGDLTAQ EKDQICDFLH 1101 1150 ENSTTRP00000009402/1-1210 GRVQACEREA LARLHRTFRA FHSVAFPSCG PCLEQPDEAR SGRLKALLSH ENSP00000475456/1-1208 GRVQARERQA LARLRRTFQA FHSVAFPSCG PCLEQQDEER STRLKDLLGR ENSBTAP00000047517/1-1218 SRVQAREREA LANLHHTFQA FHSVAFPSCG PCLEQPAWER SSRLKALLSH bmy_07551T0/1-1015 GRVQAREREA LARLHRTFRA FH-----SCG PCLEQPDEAR SGRLKALLSH BACU011404/1-1145 GRVQAREREA LARLHRTFRA FHSVAFPSCG PCLEQPDEAR SGRLKALLSH 1151 1200 ENSTTRP00000009402/1-1210 YFEEEL-EAP GGVEAEEDPE PGQARLQDWE DQIRRDIRHL LSSWPEQRFS ENSP00000475456/1-1208 YFEEEEGQEP GGMEDAQGPE PGQARLQDWE DQVRCDIRQF LSLRPEEKFS ENSBTAP00000047517/1-1218 YFEEES-EQP GGLETEDDPE LGQDRLQDWE DQIRRDIRQL LSSWPEQRFS bmy_07551T0/1-1015 YFEEEL-EAP GGVETEEDPE PGQARLQDWE DQIRRDIRHL LSSWPEQRFS BACU011404/1-1145 YFEEEL-EAP GGVETEEDPE PGQARLQDWE DQIRRDIRHL LSSWPEQRFS 1201 1250 ENSTTRP00000009402/1-1210 GRAVARIFHG IGSPCYPAQV YGRDKRFWRK YLHLSFHALM RLATEEILLW ENSP00000475456/1-1208 SRAVARIFHG IGSPCYPAQV YGQDRRFWRK YLHLSFHALV GLATEELLQV ENSBTAP00000047517/1-1218 GRAVARVFHG IGSPCYPAQV FGRDRRFWRK YLHLSFPALM HLATQELLLW bmy_07551T0/1-1015 GRAVARVFHG IGSPCYPAQV YGRDQRFWRK YLHLSFHALV HLATEEILLW BACU011404/1-1145 GRAVARVFHG IGSPCYPAQV YGRDQRFWRK YLHLSFHALV HLATEEILLW 1251 1300 ENSTTRP00000009402/1-1210 GC ENSP00000475456/1-1208 AR ENSBTAP00000047517/1-1218 GR bmy_07551T0/1-1015 GC BACU011404/1-1145 GC