KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:58:14 2014 Check: 00 .. Name: ENSBTAP00000047522/1-805 Len: 868 Check: 862 Weight: 1.00 Name: ENSP00000252034/1-724 Len: 868 Check: 6910 Weight: 1.00 Name: ENSTTRP00000008220/1-728 Len: 868 Check: 7236 Weight: 1.00 Name: bmy_00379T0/1-668 Len: 868 Check: 7862 Weight: 1.00 // 1 50 ENSBTAP00000047522/1-805 MAGLTAAARR PGVLLLLLCI LQPSQPGGVP GAVPGGVPGG VFFPGAGLGG ENSP00000252034/1-724 MAGLTAAAPR PGVLLLLLSI LHPSRPGGVP GAIPGGVPGG VFYPGAGLGA ENSTTRP00000008220/1-728 MAGPTAAALW PGALLLLLCI LHPSQPGGVP GAVPGAVPGG VFFPGAGLGG bmy_00379T0/1-668 MAGLTAAALR PGALLLLLCI FHPSQPGGVP GAVPGGVPGG VFYPGAGLGG 51 100 ENSBTAP00000047522/1-805 LGVGALGPGV KPAKPGVGGL AGPGLGAGLG ALP-GAFPGA LVPGGPAGAA ENSP00000252034/1-724 LGGGALGPGG KPLKPVPGGL AGAGLGAGLG AFPAVTFPGA LVPGGVADAA ENSTTRP00000008220/1-728 LG-GALGPGG KPPKPGAGGL VGAGL----- --------GA XXXXXXXXXX bmy_00379T0/1-668 LGVGALGPGG KPPKPGLG-- ---------- AFPAGAYPGA LVPGGPVGAA 101 150 ENSBTAP00000047522/1-805 AAYKAAAKAG AA-------G LGVGGIGGVG GLGVSTGAVV PQLGAGVGAG ENSP00000252034/1-724 AAYKAAKA-- ---------G AGLGGVPGVG GLGVSAGAVV PQPGAGV--- ENSTTRP00000008220/1-728 XXXXXXXXXX XXXXXXXXXX XXAAGLGGVG GLGVSAGAVV PQLGAGVGA- bmy_00379T0/1-668 AAFKAAAK-- ---------- ---------- -----AGAVV PQLGAGVGVG 151 200 ENSBTAP00000047522/1-805 VKPGKVPGVG LPGVYPGGVL PGAGARFPGI GVLPGVPTGA GVKPKAPGGG ENSP00000252034/1-724 -KPGKVPGVG LPGVYPGGVL P--GARFPGV GVLPGVPTGA GVKPKAPGVG ENSTTRP00000008220/1-728 -KPGKVPGVG LPGVYPGGVL P--GARFPGV GVLPGVPTGA GVKPKAPGGG bmy_00379T0/1-668 GKPGKVPGVG LPGVFPGGVL PGTGARFPGV GVLPGVPTGA GVKAKAPGGG 201 250 ENSBTAP00000047522/1-805 GAFAGIPGVG PFGGQQPGVP LGYPIKAPKL PGGYGLPYST GKLPYGFGPG ENSP00000252034/1-724 GAFAGIPGVG PFGGPQPGVP LGYPIKAPKL PGGYGLPYTT GKLPYGYGPG ENSTTRP00000008220/1-728 GAFAGIPGVG PFGGPQPGVP LGYPIKAPKL PGGYGLPYST GKLPFGYGPG bmy_00379T0/1-668 GAFAGIPGVG PFGGQQPGVP LGYPIKAPKL PSGYGLPYST GKLPFGYGPG 251 300 ENSBTAP00000047522/1-805 GVAGAAGKAG YPTGTGVGPQ --AAAAAAKA AAKLGAGGAG VLPGVGVGGA ENSP00000252034/1-724 GVAGAAGKAG YPTGTGVGPQ -AAAAAAAKA AAKFGAGAAG VLP--GVGGA ENSTTRP00000008220/1-728 GVAGAAGKAG YPTGT---PQ -AAAAAAAKA AAKLGAGGAG VLP-----GA bmy_00379T0/1-668 AVAGAAGKAG YPTGTGVGTQ AAAAAAAAKA AAKLGAGGAG VLPGIGVGGA 301 350 ENSBTAP00000047522/1-805 GIPGAPGAIP GIGGIAGVGA PDAAAAAAAA AKAAKFGAAG GFPGVGVPGV ENSP00000252034/1-724 GVPGVPGAIP GIGGIAGVGT PAAAAAAAAA AKAAKYGAAA GL----VPGG ENSTTRP00000008220/1-728 GIPGGPGVIP GIGGIAGVGA PDA--AAAAA AKAAKYGAAG GL----VPGA bmy_00379T0/1-668 GIPGGAGVIP GIGGIAGVGA PDA--AAAAA AKAAKYGAAG GL----VPGV 351 400 ENSBTAP00000047522/1-805 GVPGVGVPGV GVPGVGVPGV GVPGVGVPGV GVPGVGVPGV GVPGVGVPGA ENSP00000252034/1-724 --PGFG-PGV ----VGVPGA GVPGVGVPGA GIP--VVPGA GIPGAAVPGV ENSTTRP00000008220/1-728 --PGFV-PGA ----VGIPGV GVPGVGVPGV GVP--GVPGV GVPGVGVPGA bmy_00379T0/1-668 --PGFG-PGV ----VGIPGV GVPGVGVPGV GVPGVGVPGV GVPGVGVPGV 401 450 ENSBTAP00000047522/1-805 VSPAAAAKAA AKAAKFGARG GVGVGGIPTF GVG-PG-GFP GIG------- ENSP00000252034/1-724 VSPEAAAKAA AKAAKYGARP GVGVGGIPTY GVG-AG-GFP GFGVGVGGIP ENSTTRP00000008220/1-728 VSPAAAAKAA AKAAKFGARG GVGVGGIPTY GVG-AG-GFP GFGVGVGGVP bmy_00379T0/1-668 GVPGVGV--- ---------P GVGVPGVGVP GVGVPGVGVP GVGVPGVGIP 451 500 ENSBTAP00000047522/1-805 --DAAAAQAA AAAKAAKIGA GGVGALGGLV PGAPGAIPGV PGVGGVPGVG ENSP00000252034/1-724 GVAGVPGVG- --------GV PGVGGVPGVG IS-PEAQAAA AAKAAKYGVG ENSTTRP00000008220/1-728 GAGISPAAQA AAAKAAKIGA AGAGALGGLV PG-AGKIPGV PGAEGVPGAG bmy_00379T0/1-668 GAVSPAAAAK AAAKAAKFAA AQAAAAQ--- ---AAAAQAA AAKAAKIGAG 501 550 ENSBTAP00000047522/1-805 IPAAAAAKAA AKAAQFGLGP GVGVAPGVGV VPGVGVVPGV GVAPGIGLGP ENSP00000252034/1-724 TPAAAAAKAA AKAAQFGLVP GVGVAPGVGV APGVGVAPGV GLAPGVGVAP ENSTTRP00000008220/1-728 IQAAAAAKAA AKAAPFALLC LAGVVPGVGV GPGVGLVPGV GVGPGVGIGP bmy_00379T0/1-668 IQAAAAAKAA AKAAQFGI-- ---------- ---------- ---------- 551 600 ENSBTAP00000047522/1-805 G--------- --GVIGAGVP AAAKSAAKAA AKAQFRAAAG LPAGVPGLGV ENSP00000252034/1-724 GVGVAPGVGV APGIGPGGVA AAAKSAAKVA AKAQLRAAAG LGAGIPGLGV ENSTTRP00000008220/1-728 G--------- -------GVI AAAKAAAKAA AKAQFRAAAG LPAGVPGFGA bmy_00379T0/1-668 ---------- -------GAP AAAKSAAKAA AKAQFRAAAG LPAGVPGFGA 601 650 ENSBTAP00000047522/1-805 GVGVPGLGVG VGVPGLGVGA GVPGLGA--- ---------- ------VPGT ENSP00000252034/1-724 GVGVPGLGVG AGVPGLGVGA GVPGFGA--- ---------- ------VPGA ENSTTRP00000008220/1-728 GVGVPGLGVG VGVPGFGAAG EGPGLNRKTP DLREGDLSPS MSPPLRVPGA bmy_00379T0/1-668 GVGVPGLGVG VGVPGFGAGA ---------- ---------- ------VPGA 651 700 ENSBTAP00000047522/1-805 LAAAKAAKFG PGGVGALGGV GDLGGAGIPG GVAGVGPAAA AAAAKAAVQL ENSP00000252034/1-724 LAAAKAAKYG AAVPGVLGGL GALGGVGIPG GVVGAGPAAA AAAAKAAAKA ENSTTRP00000008220/1-728 LPAAKAAKFG AGV-GALGEL GDLGGAGVPG GVAGVGLDXX XXXXXXXXXX bmy_00379T0/1-668 LAAAKAAKYG AGVPGALGDV GGLGGVGVPG GVVGAVPDAV AAAAKAAAKA 701 750 ENSBTAP00000047522/1-805 VPKHRNPHAG LGHTISWPPW PPFPRPIAVP YVRRLPPPPY WEQPSCSCGI ENSP00000252034/1-724 AQFGLVGAAG LG-GLGVGGL G-VPGVGGLG GI-------- ---------- ENSTTRP00000008220/1-728 XXXXXXXXXX XXXXXXVGGL GVVPGAVGLG GV-------- ---------- bmy_00379T0/1-668 AQF------- ---------- ---------- GV-------- ---------- 751 800 ENSBTAP00000047522/1-805 HPPICPSVRP SLSWFGRPAP LAGWAPPPST WLTCHGSLGP ASTPSHTPLR ENSP00000252034/1-724 -PPAAAAKAA KYGAAGLGGV LGGAGQFPLG GVAARPGFGL S------PIF ENSTTRP00000008220/1-728 -PPAAAAKAA KFGAAGLGGF LGAARPFPAG GVAARPGFGL S------PIF bmy_00379T0/1-668 -SPAAAAKAA KYGAAGLGGF LGAARPFPLG GVAARPGFGL S------PIF 801 850 ENSBTAP00000047522/1-805 R----GPEPL GVKSCTSWG- -------RRN LRPNLDLPPR STVSPSPPRA ENSP00000252034/1-724 P----GGACL G-KAC---G- -------RKR K--------- ---------- ENSTTRP00000008220/1-728 P----AGACL G-KAC---G- -------RKR K--------- ---------- bmy_00379T0/1-668 PGVGAGGLGV GGKPPKLYGG ALGALGYQVR KIPPIGNSPL ALVEFIRPSA 851 900 ENSBTAP00000047522/1-805 TVLQSISPPP RPSLCVSL ENSP00000252034/1-724 ---------- -------- ENSTTRP00000008220/1-728 ---------- -------- bmy_00379T0/1-668 HPSIRPGPHL AARHR---