KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:58:14 2014 Check: 00 .. Name: ENSTTRP00000013017/1-808 Len: 932 Check: 3700 Weight: 1.00 Name: ENSP00000429018/1-931 Len: 932 Check: 4493 Weight: 1.00 Name: bmy_12386T0/1-808 Len: 932 Check: 9219 Weight: 1.00 Name: ENSBTAP00000047527/1-810 Len: 932 Check: 2722 Weight: 1.00 // 1 50 ENSTTRP00000013017/1-808 MGGSCTQRRP AGRRQVLFPF LLPLFYPALC EQIRYSIPEE LAKGSVVGNL ENSP00000429018/1-931 MKASSGRCGL VRWLQVLLPF LLSLFPGALP VQIRYSIPEE LAKNSVVGNL bmy_12386T0/1-808 MRPSAERSGR ARWRQVLLPF LLSLIRGALP DQIRYSIPEE LAKNSVVGNL ENSBTAP00000047527/1-810 MRLSTETSGR TRWRQVLLLF LLSLFRGALP NQIRYSIPEE LAKNSVVGNL 51 100 ENSTTRP00000013017/1-808 AKDLGLSVLD VSARKLRVSA EKLLFNVDAE SGDLLVKDRI DREQICKERR ENSP00000429018/1-931 AKDLGLSVRD LPARKLRVSA EKEYFTVNPE SGDLLVSDRI DREQICGKQP bmy_12386T0/1-808 AKDLGLSVRD LPARKLRVTA EKEYFIVNPE SGDLLVSDRI DREQICGKKP ENSBTAP00000047527/1-810 AKDLGLSVPD LSARKLRISA EKEYFVVKPE SGELLVSNRI DREEICGRKP 101 150 ENSTTRP00000013017/1-808 RCELELEAVV ENPLNIFHII VVVEDINDHA PQFHKDEINL EISESVSLGT ENSP00000429018/1-931 LCVLDFDTVA ENPLNIFYIA VIVQDINDNT PLFKQTKINL KIGESTKPGT bmy_12386T0/1-808 LCILDFDTVA ENPLNIFHVS VIVQDINDNT PLFKQSKIDL KIGESTKPGK ENSBTAP00000047527/1-810 LCVLDFDTVA ENPLNIFHVT VIVEDINDNT PLFKQSKIDL KIGESTKPGK 151 200 ENSTTRP00000013017/1-808 GTILESAKDP DINMNSLSKY QLSPNEYFSL VVKDNPEGGK YPELVLKKTL ENSP00000429018/1-931 TFPLDPALDS DVGPNSLQRY HLNDNEYFDL AEKQTPDGRK YPELILKHSL bmy_12386T0/1-808 TFPLDPALDS DAGPNSLQRY NLNENEHFDL TEKQTPDGRK YPELILKHSL ENSBTAP00000047527/1-810 TFPLDPALDS DAGPNSLQRY YLNGNEYFDL REIQTPDGHK YPELILKHSL 201 250 ENSTTRP00000013017/1-808 DRETQSAHHL VLTALDSGDP PRSGTVQIRI LVVDANDNPP VFSQDVYKVS ENSP00000429018/1-931 DREEHSLHQL VLTAVDGGDP PQSGTTQIRI KVTDANDNPP VFSQDVYRVT bmy_12386T0/1-808 DREEQNFHHL VLTAVDGGDP PQSGTTQIQI QVTDANDNAP VFSQDVYRVS ENSBTAP00000047527/1-810 DREEQNFHQL LLTAVDGGDP PQSGTTQIQI QVTDANDNPP VFSQDVYRVS 251 300 ENSTTRP00000013017/1-808 LREDVPPGTF VLRVSATDQD EGLNAEITYS FLGVADTARH VFSLDSATGN ENSP00000429018/1-931 LREDVPPGFF VLQVTATDRD EGINAEITYS FHNVDEQVKH FFNLNEKTGE bmy_12386T0/1-808 LQEGVPPGFL VLQLTATDQD EGINAEIIYS FHNVDEQVEQ FFNLDRRTGE ENSBTAP00000047527/1-810 LQEGVPPGFL VLRVTATDQD EGVNAEITYS FHNVDEQVKQ FFNLNQRTGE 301 350 ENSTTRP00000013017/1-808 IITHQPLDYE DVKRYAMDVE AKDRGSLSTQ CKVIIEVLDE NDNSPEIIIT ENSP00000429018/1-931 ITTKDDLDFE IASSYTLSIE AKDPGDLAAH CSIQVEILDD NDCAPEVIVT bmy_12386T0/1-808 ITTKDYFDFE IANSYTLTIE AKDPGDLAAH CSVQVEILDE NDCAPEVIVT ENSBTAP00000047527/1-810 ITSNDDFDFE IANSYTLRIE AKDPGDLAAH CSVQVDILDE NDCAPEMIVT 351 400 ENSTTRP00000013017/1-808 SLSDQILEDS RPGMVVGLFK TRDQDSKENG EVTCILSRDI PFKIHSSSNN ENSP00000429018/1-931 SVSTPLPEDS PPGTVIALIK TRDRDSGENG EVYCQVLGNA KFILKSSSKN bmy_12386T0/1-808 SIFTPLPEDS PPGTVIALIK TRDRDSGENG DVYCQILGKA EFILKSYSKN ENSBTAP00000047527/1-810 SVFTPLPEDS PPGTLIALIK TKDRDSGENG EVYCQILGKA EFILKSYLKN 401 450 ENSTTRP00000013017/1-808 YYKLVTDGAL DREQTPEYNV TITATDRGKP PLSSSATITL RITDVNDNAP ENSP00000429018/1-931 YYKLVTDGAL DREEIPEYNL TITATDGGKP PLSSSIIVTL HISDVNDNAP bmy_12386T0/1-808 YYKLVTDRTL DREEIPEYNV TIMATDRGKQ PLSSSISITL RLADVNDNAP ENSBTAP00000047527/1-810 YYKLTTDKTL DREEISEYNI TVMATDRGNP PLSSSITITL HIADVNDNTP 451 500 ENSTTRP00000013017/1-808 VFHQASYVVH LAENNLPGTS IAQVSASDPD LGPNGHVSYS ILASDLEPRA ENSP00000429018/1-931 VFQQTSYMVH VAENNPPGAS IAQISASDPD LGPSGQVSYS IVASDLKPRE bmy_12386T0/1-808 VFHQASYVAH VSENNPPGAS IAQVSASDPD LGPNGHVSYS IVASDLEPRA ENSBTAP00000047527/1-810 VFHQASYVVH VPENNPPGAS IAHVSASDPD LGPNGHVSYS IVASDLEPRA 501 550 ENSTTRP00000013017/1-808 LSSYVSVNAQ SGVVFAQRAF DHEQLRAFEL TLQARDHGSP ALSANVSLRV ENSP00000429018/1-931 ILSYVSVSAQ SGVVFAQRAF DHEQLRAFEL TLQARDQGSP ALSANVSLRV bmy_12386T0/1-808 LSSYVSVSAQ SGVVFAQRAF DHEQLRAFEL TLQARDHGSP ALSANVSLRV ENSBTAP00000047527/1-810 LSSYVSVNPQ SGVVFAQRAF DHEQLRAFEL TLQARDHGSP ALSSNVSLRV 551 600 ENSTTRP00000013017/1-808 LVGDRNDNAP RVLYPALGPD GSALFDMVPR AAQPGYLVTK VVAVDADSGH ENSP00000429018/1-931 LVGDLNDNAP RVLYPALGPD GSALFDMVPR AAEPGYLVTK VVAVDADSGH bmy_12386T0/1-808 LVGDRNDNAP RVLYPALGPD GSALFDTVPR AAQPGYLVTK VVAVDADSGH ENSBTAP00000047527/1-810 LVGDRNDNAP RVLYPALGPD GSALFDTVPR AAQPGYLVTK VVAVDADSGH 601 650 ENSTTRP00000013017/1-808 NAWLSYHVLQ ASEPGLFSVG LRTGEVRTAR ALGDRDAARQ RLLVAVRDGR ENSP00000429018/1-931 NAWLSYHVLQ ASEPGLFSLG LRTGEVRTAR ALGDRDAARQ RLLVAVRDGG bmy_12386T0/1-808 NAWLSYHVLQ ASEPGLFSVG LRTGEVRTAR ALGDRDAARQ RLLVAVRDGG ENSBTAP00000047527/1-810 NAWLSYHVLQ ASEPGLFSVG LRTGEVRTAR ALGDRDAARQ RLLVAVRDGG 651 700 ENSTTRP00000013017/1-808 QPPLSATATL LLVFADSLQE ALPDLSDHSE PTDPQAELQF YLVVALALIS ENSP00000429018/1-931 QPPLSATATL HLIFADSLQE VLPDLSDRRE PSDPQAKLQF YLVVALALIS bmy_12386T0/1-808 QPPLSATATL LLVFADSLQE ALPDLSDHPE PTDPQAELQF YLVVALALIS ENSBTAP00000047527/1-810 QPPLSATATL LLVFADSLQE ALPDLSDQPA PSDPQAELQF YLVVALALIS 701 750 ENSTTRP00000013017/1-808 VLFLLVVILA IALRLRCSSS PSAGGGCFGS VLCSKSGPEI PPNYSDGTLP ENSP00000429018/1-931 VLFFLAVILA ISLRLRLSSR SDAWD-CFQP GLSSKPGPGV LPNYSEGTLP bmy_12386T0/1-808 VLFLLAVILA VALHLRRSSS PAAWS-CFQP GLSSKSGPVV PPNYSEGTLP ENSBTAP00000047527/1-810 VLFLLAVILA VALHLRRSSS PAAWG-CFKP GLCVKSAPGV LPHYSEGTLP 751 800 ENSTTRP00000013017/1-808 YADNLCVPRN QTNPEFNFLT SVEHCPATQD ILNKDSSSVL LASVLTLSVE ENSP00000429018/1-931 YSYNLCVASQ SAKTEFNFLN ITPELVPAQD LVCDNASWEQ NTNHGAAGVP bmy_12386T0/1-808 YSYNLCVASQ SAKAEFNFLS VTPEMAPPRD LLCEDASWVP SSTHGDAGVP ENSBTAP00000047527/1-810 YSYNLCVASQ SAKTEFNFLN ITPEVVPPQD LLCEDASWVP STNHGDAGVP 801 850 ENSTTRP00000013017/1-808 ADKNTFKQ-- ---------- ---------- ---------- ---------- ENSP00000429018/1-931 FASDTILKQA PPNTDWRFSQ AQRPGTSGSQ NGDDTGTWPN NQFDTEMLQA bmy_12386T0/1-808 FASGTILKV- ---------- ---------- ---------- ---------- ENSBTAP00000047527/1-810 FASDTILKPK R--------- ---------- ---------- ---------- 851 900 ENSTTRP00000013017/1-808 ---------- ---------- ---------- ---------- ---------- ENSP00000429018/1-931 MILASASEAA DGSSTLGGGA GTMGLSARYG PQFTLQHVPD YRQNVYIPGS bmy_12386T0/1-808 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047527/1-810 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000013017/1-808 ---------- ---------- ---------- -- ENSP00000429018/1-931 NATLTNAAGK RDGKAPAGGN GNKKKSGKKE KK bmy_12386T0/1-808 ---------- ---------- ---------- -- ENSBTAP00000047527/1-810 ---------- ---------- ---------- --