KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:15 2014 Check: 00 .. Name: ENSTTRP00000014932/1-400 Len: 692 Check: 9286 Weight: 1.00 Name: ENSP00000230582/1-514 Len: 692 Check: 6299 Weight: 1.00 Name: BACU007809/1-407 Len: 692 Check: 3251 Weight: 1.00 Name: ENSBTAP00000047551/1-516 Len: 692 Check: 228 Weight: 1.00 Name: bmy_22479T0/1-572 Len: 692 Check: 624 Weight: 1.00 // 1 50 ENSTTRP00000014932/1-400 ---------- ---------- ---------- ---------- ---------- ENSP00000230582/1-514 MAVWLAQWLG PLLLVSLWGL LAPA------ ---------- ---------S BACU007809/1-407 -MINVRKQFR RVVNGFVTGS TEIDDEGSRD HSESGVRALF RTREKHRNLR ENSBTAP00000047551/1-516 MDIGPVPWLG PLLLVSLWAS SAPA------ ---------- ---------S bmy_22479T0/1-572 MAIGPVPWLG PLLMVSLWGS SAPGRRILRV RQGLLRGPGL TLSPPHPTVS 51 100 ENSTTRP00000014932/1-400 ---------- ---------- ---------- ---------- ---------- ENSP00000230582/1-514 LL-----RRL GEHIQQFQES SAQGLGLSLG PGAAALPKVG WLEQLLDPFN BACU007809/1-407 GVGELKPRRL GEHIQRFQES S--GLGLSLD QGGVALPKER WLDQPLDPFN ENSBTAP00000047551/1-516 LL-----RRL GEHILRFQES S--ALGLGLG PDSVTLPKEG WLEQPLDPFN bmy_22479T0/1-572 LL-----RRL GEHIQRFQES S--GLGLSLD QGGVALPKEG WLEQPLDPFN 101 150 ENSTTRP00000014932/1-400 VNDQQAS--- ---------- QNGPVFLHLG GEGSIGPGSV MRGHPATLAP ENSP00000230582/1-514 VSDRRSFLQR YWVNDQHWVG QDGPIFLHLG GEGSLGPGSV MRGHPAALAP BACU007809/1-407 ASDRRSFLQ- ---------- ---------- ---------- ---------- ENSBTAP00000047551/1-516 ASDRRSFLQR YWVNDQHWTS QDGPVFLHLG GEGSLGPGSV MRGHPANLAP bmy_22479T0/1-572 ASDRRSFL-- ---------- QDGPVFLHLG GEGSLGPGSV MRGHPATLAP 151 200 ENSTTRP00000014932/1-400 VWGALVIGLE HRFYGLSIPA EGLDVAQLRF LSSRHAXXXX SGIPGVGDPS ENSP00000230582/1-514 AWGALVISLE HRFYGLSIPA GGLEMAQLRF LSSRLA---- ---------- BACU007809/1-407 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047551/1-516 IWGALVISLE HRFYGLSIPA EGLDMAQLRF LSSRHA---- ---------- bmy_22479T0/1-572 VWGALVIGLE HRFYGLSIPA EGLDVAQLRF LSSRHA---- ---------- 201 250 ENSTTRP00000014932/1-400 LPSDPRLADV VSARLALSRL FNVSFSSPWL CFGGSYAGSL AAWARLKVPG ENSP00000230582/1-514 ------LADV VSARLALSRL FNISSSSPWI CFGGSYAGSL AAWARLK--- BACU007809/1-407 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047551/1-516 ------LADA ASARLTLSRL FNVSSTSPWI CFGGSYAGSL AAWARLK--- bmy_22479T0/1-572 ------LADV VSARLALSRL FNVSFSSPWL CFGGSYAGSL AAWARLK--- 251 300 ENSTTRP00000014932/1-400 LLWFPHLIFA SVASSAPVRA ILDFSEYNDV VSRSLMNTAI GGSLECRAAA ENSP00000230582/1-514 ---FPHLIFA SVASSAPVRA VLDFSEYNDV VSRSLMSTAI GGSLECRAAV BACU007809/1-407 ---FPHLIFA SVASSAPVRA ILDFSEYND- ---------- -----CRAAA ENSBTAP00000047551/1-516 ---FPHLFFA SIASSAPVRA ILDFSKYNDV VSRSLMNTAI GGSLECRAAA bmy_22479T0/1-572 ---------- ---------- ---------- ---------- -----CRAAA 301 350 ENSTTRP00000014932/1-400 SXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000230582/1-514 SVAFAEVERR LRSGGAAQAA LRTELSACGP LGRAENQAEL LGALQALVGG BACU007809/1-407 SAAFAEVERR LRAGGSAQAA LRAELGACGS LGRAADQAEL LGALQALVGG ENSBTAP00000047551/1-516 SAAFAEVERR LRASRGAWAT LSVELGACGS LERAEDQAEL LGALQALVGG bmy_22479T0/1-572 SAAFAEVERR LRAGGSAQAA LRAELGACGS LGRAADQAEL LGALQALVGG 351 400 ENSTTRP00000014932/1-400 XXXXXXXXXX XXXXXXXXXX XXXXX----X NCSSPAPYRE LRRAVQVVTH ENSP00000230582/1-514 VVQYDGQTGA PLSVRQLCGL LLGGG----G NRSHSTPYCG LRRAVQIVLH BACU007809/1-407 AVQYDGQAGA PLSVRQLCGL LLGDR----D NCSRPAPYRG LRRAVQVVTH ENSBTAP00000047551/1-516 AVQYDGQAGA PLSVRQLCRL LLGDRGNCKG NCSGSAPYRG LRRAVQVVTH bmy_22479T0/1-572 AVQYDGQAGA PLS------- ---------- ---------- ------VVTH 401 450 ENSTTRP00000014932/1-400 SLGQKCLSFS RAETVAQLKV TETQVAGVGD RQWLYQTCTE FGYYVTCEVP ENSP00000230582/1-514 SLGQKCLSFS RAETVAQLRS TEPQLSGVGD RQWLYQTCTE FGFYVTCENP BACU007809/1-407 SLGQKCLSFS RAETVAQLKV TEPQVAGVGD RQWLYQTCTE FGYYVTCEVP ENSBTAP00000047551/1-516 SLGQRCLSIP RAETVAQLRV TELQVSSVGD RQWLYQTCTE FGYYVTCEVP bmy_22479T0/1-572 SLGQKCLSFS RAETVAQLKV TEPQVAGVGD RQWLYQTCTE FGYYVTCEVP 451 500 ENSTTRP00000014932/1-400 GCPFSQLPAL PSQLELCEQV FGFSASSIA- AVSQTNSYYG GQTR-ATQVL ENSP00000230582/1-514 RCPFSQLPAL PSQLDLCEQV FGLSALSVAQ AVAQTNSYYG GQTPGANKVL BACU007809/1-407 GCPFSQLPAL PSKLELCEQV FGFSASSIAQ AVSQTNSYYG GQTPGATQVL ENSBTAP00000047551/1-516 GCPFSQLPAL PSELELCEQV FGLSTSSVAQ AVAQTNSYYG GQTPGATQVL bmy_22479T0/1-572 GCPFSQLPAL PSXLELCEQV FGFSASSIAQ AVSQTNSYYG GQTPGATQVL 501 550 ENSTTRP00000014932/1-400 FVNGDIDPWH VLSVTQPLG- ---------- ---------- ---------- ENSP00000230582/1-514 FVNGDTDPWH VLSVTQALGS SESTLLIRTG SHCLDMAPER PSDSPSLRLG BACU007809/1-407 FVNGDIDPWH VLSITQPLGP SESALLIPSA SHCLDMAPER PSDSPSLRLA ENSBTAP00000047551/1-516 FINGDTDPWH VLSVTQPLGS SEPALLIPSA SHCLDMAPER PSDSPSLRLA bmy_22479T0/1-572 FVNGDIDPWH VLSITQPLGP XESALLIPSA SHCLDMAPER PSDSPSLRLA 551 600 ENSTTRP00000014932/1-400 ---------- ---------- ---------- ---------- ---------- ENSP00000230582/1-514 RQNIFQQLQT WLKLAKESQI K--------- ---------- --GEV----- BACU007809/1-407 RQNIFQQLQT WLGLAKKSQV R--------- ---------- --GGV----- ENSBTAP00000047551/1-516 RQKVSQQLQT WLGLAKKSQV R--------- ---------- --GAV----- bmy_22479T0/1-572 RQNIFQQLQT WLGLAKKSQI KAPNSAGLVL LRVRSHHTVH GAGGVSGSLR 601 650 ENSTTRP00000014932/1-400 ---------- ---------- ---------- ---------- ---------- ENSP00000230582/1-514 ---------- ---------- ---------- ---------- ---------- BACU007809/1-407 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047551/1-516 ---------- ---------- ---------- ---------- ---------- bmy_22479T0/1-572 GRGRRQESAG SQVSCPGICP NGSPGAKYIR KRRAQGPSPR SPAPWPLRGQ 651 700 ENSTTRP00000014932/1-400 ---------- ---------- ---------- ---------- -- ENSP00000230582/1-514 ---------- ---------- ---------- ---------- -- BACU007809/1-407 ---------- ---------- ---------- ---------- -- ENSBTAP00000047551/1-516 ---------- ---------- ---------- ---------- -- bmy_22479T0/1-572 FRDPLAAKSG LEHLLVGPRA SLGRRKDTSL RDSDLLGSEL SV