KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:58:15 2014  Check: 00 ..

 Name: ENSP00000473929/1-144     Len:    197  Check:  8052  Weight:  1.00
 Name: ENSBTAP00000047552/1-70   Len:    197  Check:  2345  Weight:  1.00
 Name: bmy_12268T0/1-88          Len:    197  Check:  3821  Weight:  1.00
 Name: ENSTTRP00000002174/1-100  Len:    197  Check:  8858  Weight:  1.00
 Name: BACU000586/1-153          Len:    197  Check:  547  Weight:  1.00

//


                          1                                                   50
ENSP00000473929/1-144     ---------- ---------- ------MGRG YSGALQARGG LEEPLERGLR 
ENSBTAP00000047552/1-70   ---------- ---------- ---------- ---------- ---------- 
bmy_12268T0/1-88          ---------- ---------- ---------- ---------- ---------- 
ENSTTRP00000002174/1-100  ---------- ---------- ---------- ---------- ---------- 
BACU000586/1-153          MFAQQEGCQC DTGFVLSGTD CVPPVQCGFS MGGSTLSFSK VEIGREDRSI 


                          51                                                 100
ENSP00000473929/1-144     GPSFTQSPLH GAAAAYLSAQ RDASLPVPGQ RSDMQKVTLG LLVFLAGFPV 
ENSBTAP00000047552/1-70   ---------- ---------- ---------- ---MQEVALS LLVLLAGLPA 
bmy_12268T0/1-88          ---------- ---------- ---------- ---MQEVALS LLVLLAGLPA 
ENSTTRP00000002174/1-100  ---------- ---------- ---------- ---------- -------LPA 
BACU000586/1-153          SKMSIQVNGT QVCLQRERES IDLAKIPPGQ LSDMQEVALS LLVLLAGLPA 


                          101                                                150
ENSP00000473929/1-144     LDANDLEDKN SPFYYDWHSL QVGGLICAGV LCAMGIIIVM S--------- 
ENSBTAP00000047552/1-70   LDANDPEDKN SPFYYDWYSL RVGGLIFAGI LCAMGIIVLM S--------- 
bmy_12268T0/1-88          LDANDPEDKN SPFYYDWFSL RVGGLIIAAV LCAVGIIVLM S--------- 
ENSTTRP00000002174/1-100  LDANDPEDKN SPFYYDWFSL RVGGLIFAAV LCAIGIIVLM SEWSSSGEGA 
BACU000586/1-153          LDANDPEDKN SPFYYDWFSL RVGGLIIAAV LCAIGIIVLM S--------- 


                          151                                                200
ENSP00000473929/1-144     ---------- -------AKC KCKFGQKSGH HPGETPPLIT PGSAQS- 
ENSBTAP00000047552/1-70   ---------- -------GKC KCKFRQKPR- ---------- ------- 
bmy_12268T0/1-88          ---------- -------GKC KCKFSQKPCH HPGDAPPLIT SGSAHKC 
ENSTTRP00000002174/1-100  AQGSGCPPLT FPFLLTGGKC KCKFSRKPRH YPGDAPPLIT SGSEHNC 
BACU000586/1-153          ---------- -------GKC KCKFSRKPR- ---------- -------