KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:16 2014 Check: 00 .. Name: ENSP00000227349/1-778 Len: 788 Check: 1131 Weight: 1.00 Name: ENSBTAP00000047568/1-780 Len: 788 Check: 8309 Weight: 1.00 Name: BACU017367/1-319 Len: 788 Check: 2731 Weight: 1.00 Name: bmy_10903T0/1-471 Len: 788 Check: 954 Weight: 1.00 Name: ENSTTRP00000010554/1-770 Len: 788 Check: 9505 Weight: 1.00 // 1 50 ENSP00000227349/1-778 MSKRKLIPKL SIQSPVLHTN LNVQSTHPPL KKEDLHRISK DSLESDSESL ENSBTAP00000047568/1-780 MSHSKFIPTV SIQSPVHHTN LKVQSTEPSF KKEDLHLISK DSLESDSESP BACU017367/1-319 MIHSKLIPKL SIQSPVHHTN FKVQSTEPPF KKEDLHLISK DSLESDSESL bmy_10903T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010554/1-770 MIHRKLIPKR SILSPVHHTN LKVQSTEPPF KKEDLHLISR DSLESDSESV 51 100 ENSP00000227349/1-778 TQEIMCHSEF DDRIRGNGME PDSLDEEESP RWGSLHEMEE EASGKAAQMA ENSBTAP00000047568/1-780 TQKIKSQSDL EDQIQDNDME PDSLEEEN-- ----LSETEE EASRKAAQRA BACU017367/1-319 TQETKSQSKP EDRIQDNDMD PDSLEEED-- ----LSETEE EASRKAAQT- bmy_10903T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010554/1-770 TQEIKSQSKL EDQIQDNDME PDSLEEEN-- ----LSETEE EASRKAAQR- 101 150 ENSP00000227349/1-778 REQNHHTWDQ GANNRQQPIE DKYSDLRYDP NWKSKKEEGQ LLSVEALPES ENSBTAP00000047568/1-780 KKENLHTQDA AAINSRQPTE DKYSHLRYDP NWKSKKEEGK LLPVEALPES BACU017367/1-319 ---NLHTQDA GANNSQQPIE DKYSDLRYDP NWKRKKEEGK LLAVEALPES bmy_10903T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010554/1-770 ---NLHTQDA GAKNSQQPIE DKYSDLRYDP NWKRKKEEGK LLAVEALPES 151 200 ENSP00000227349/1-778 TDSSLENLPL APLYPSQETS MELSGGKGEQ KESPQSAASL LGSEFLSPNY ENSBTAP00000047568/1-780 VDSSTENLTL NPLYPSKEPS MDLSAGKGEQ K-SPRSTASL LGSEFVSPNY BACU017367/1-319 VNGSAENLTL NPLYPSKETS MELSGGKGEQ KKSPQSTAAL LGSEFLSPNY bmy_10903T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010554/1-770 VDSSAENLTL NPLYPSKETS MEFSGGKGEQ KKSPPSTASL LGSEFLSPNY 201 250 ENSP00000227349/1-778 EHGARRSKPF SELSDSDLEE KSSSLSPYVK SSSSHNEVFL PGSRGPRRRK ENSBTAP00000047568/1-780 ELSTHRTEPF SVLSDSDPEE KSSNLSRYLK SSSSRSEAFL PGSRGPRRRK BACU017367/1-319 EHGAHCSGPF SALSSSDLEE KSSNLSQYLK SSSSHSEVFL PGSRGPRRRK bmy_10903T0/1-471 ---------- ---------- ---------M TAMKRATVF- ---------- ENSTTRP00000010554/1-770 EHGAHRSGPF SVLSSSDPEE KSSNLSQYLK SSSSQSEVFL PGSHGPRRRK 251 300 ENSP00000227349/1-778 SKQHFVEKNK LTLGLPTPKT DSYLQLHNKK RGESHPEQIS YPVRVTDKTS ENSBTAP00000047568/1-780 SKQYFVEKNK LTLGLPTPRM DSYLQLHNKK RGEGHLEQIS YPVRVTDKTS BACU017367/1-319 SKQYFVEKNK LTLGLPTPKT NSYLQLHNKK RRETHPEQIS YPVRVTDK-- bmy_10903T0/1-471 ---------- ---------- ---------- ------HEHT YK-------- ENSTTRP00000010554/1-770 SKQYFVEKNK LTLGLRTPKT DSYLQLHNKK RRETHPEQXX XXXXXXXXXX 301 350 ENSP00000227349/1-778 IQNAKEMENA AIDPEDKWHQ RAQQLKNYQE HWSQYESTKS SNVPRGQPSD ENSBTAP00000047568/1-780 IQNARETGNV AIDPEDKWHQ RAQQLKDYQE HWSQYEHEKS SSGPRGQSSE BACU017367/1-319 ---------- ---------- ---------- ---------- ---------- bmy_10903T0/1-471 ---------- ---------- -----SDYQE HWSQFENAKS SSGPRGQSSE ENSTTRP00000010554/1-770 XXXXXXXXXX XXXXXXXXXX XXXXXXDYQE HWSQFENAKS SNGPRGQSSE 351 400 ENSP00000227349/1-778 MVNDHQPSRR PAKLKIRKQC KHQNGLKSST TEEVTASQGN QNNPPRQQQN ENSBTAP00000047568/1-780 TTNGQQPSRK PAKHKIRKQR RHRHGPKSLV TEELVVSQGN QNNTPRHQQN BACU017367/1-319 ---------- ---------- ---------- ---------- ---------- bmy_10903T0/1-471 TTNGQQPSRR PAKHKIRKQH KHRHGPKSLV TEELVVSQGN QNNSSRQQQT ENSTTRP00000010554/1-770 TTNGQQPSRR PAKHKIQKQH EHRHGPKSLV TEELVVSQGN QNNASRQQQT 401 450 ENSP00000227349/1-778 QNKPLDTSTK PESIVIMHAS NNDVQASRAL RSHNLKETSN TFAPPKQAFD ENSBTAP00000047568/1-780 PNKPIDTEVT QETVVIMNAT NDDLQYSSVL RSQDPTVTSN QYAPLHQISD BACU017367/1-319 ---------- ---------- ---------- ---------- ---------- bmy_10903T0/1-471 PNKPIDTAVK QETVVMMNAP NNDLQYSGIP RSQEPKVTSN KFAPPHQASD ENSTTRP00000010554/1-770 PTKPIPTAVK QETVVVMNAP NNDLQYSGIP RSQEPKVTSN KYAPPHQASD 451 500 ENSP00000227349/1-778 KVLSKNSTGC DSGLNVNKER GHKDQEEKRF SYQQLH--TL SDMDLNNLNE ENSBTAP00000047568/1-780 KVLYKNPARY YPVTNANRER GHNDQEEKRF SYQQLHIDTL SDMHLNYLHE BACU017367/1-319 ---------- ---------- ---------- ---------- ---------- bmy_10903T0/1-471 KVLYKNSTRY HSMMNVNTER GHKDQEEKRF SYQQLHIDPL SNMDLNYLHE ENSTTRP00000010554/1-770 KVLYRNSTRC HSMMNVNTER GRKDQEEKRF SNQQLHIDTL SNTDLKYLHE 501 550 ENSP00000227349/1-778 LSKRHVLLSQ KGSQFVYHIN THGSTKNKKQ LKQPYTETKY RNLEMLWKFH ENSBTAP00000047568/1-780 LKKKHPSGSQ KGSQSVSNIN RQASTEKKKQ PKLAYTETKY KNLEILCPTH BACU017367/1-319 ---------- ---------- ---------- ---------- ---------- bmy_10903T0/1-471 LTKKHASLSQ KGSQSVSNIN DNGSTENKKQ PKGTYTETKY KNLEILWKFH ENSTTRP00000010554/1-770 LNKKHASLSQ KGSQSVSNIN DSGSTENKKQ PKRTYTETKY KDLEILWKFH 551 600 ENSP00000227349/1-778 SSSDSQTVRA SPDSWLTQIM EQHQQALVQ- --LTDVQPSE GALSSVTLPP ENSBTAP00000047568/1-780 FVSDGLKVRS QASKFHISVL ITFQLGALET AGLTCVDFST SAIKNTEILK BACU017367/1-319 ---------- ---------- ---------- ---------- ---------- bmy_10903T0/1-471 SSSESQPASA SPDSRLTQTM ERHQQALMH- --LTEVHPHE GALPGVTLPP ENSTTRP00000010554/1-770 SSSESQPASA SPDSRLTQTT EQHQQALMH- --LTEVHPHE GALPGVTLPP 601 650 ENSP00000227349/1-778 ILSRVESESQ LSSERSQRNQ VKISRSNSEG YLFQLEKGKK HK--KRSSSK ENSBTAP00000047568/1-780 IINKKFQVST LLQRQSALSD VKIQKNGNIA YLFAKEKQKK HKSVKIQNGN BACU017367/1-319 ---------- ---------- ---------- ---------- ---------- bmy_10903T0/1-471 IPSRVESESQ LSSERSQRNQ VKISRSNSEG YLFQLEKGKK HR--KRSSIK ENSTTRP00000010554/1-770 IPSRVESESQ LSSERSQRNQ VKISRSNSEG YLFQLEKGKK HG--KRSSIK 651 700 ENSP00000227349/1-778 NTKLKGYQKR DVKLGGLGPD -FESIR-DKT QKLIQQKEYA KQVKEYNMKT ENSBTAP00000047568/1-780 NTILKNYSGK EYEMGDFVPH YFLSIRTSQM QKLIQQKEYA KQVKEYNMKA BACU017367/1-319 ---------- ---------- ---------- ---------- ---------- bmy_10903T0/1-471 SSKLKGYQNR DVKLGGLGPD -LESVR-DKM QKLIQQKEYA KQVKEYNMKA ENSTTRP00000010554/1-770 SSKLKAYQNR DMKLGGLGPD -LESIR-DKT QKLIQQKEYA KQVKEYNMKA 701 750 ENSP00000227349/1-778 LSILSKPQTE KTQKKSAIPR QKALEYAKTI PKPKPSNLTH QASKEQKNPT ENSBTAP00000047568/1-780 LSIPSKPQTA ITENKSAVPR QKALEYAKTI PKPKPSNLSD QASKEKKTPT BACU017367/1-319 ------PSI- ---------- ---------- ---------- ------QNTR bmy_10903T0/1-471 LSIPSKPQIA KTENKSAVPR QKALEYAKTI PKPKPSNLSD QASKEKKNPT ENSTTRP00000010554/1-770 LSIPSKPQIA KTENKSAVPR QKALEYAKTI PKPKPANLSG QASKEKKNPT 751 800 ENSP00000227349/1-778 YAGKEESLPE ISLLEILQNR HEREKQAVAA FKVLHIV- ENSBTAP00000047568/1-780 HAGKEDTLPE ISLLEVLQNR HEREKQAVAA FKVLHIV- BACU017367/1-319 EVGNVTIDPE -------DKW HQRAQQ---- ---LKVTC bmy_10903T0/1-471 HAGKEDILPE ISLLEVLQNR HEREKQAVAA FKALHIV- ENSTTRP00000010554/1-770 HAGNGDILPE ISLLEVLQNR HEREKQAVAA FKALHIV-