KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:58:16 2014 Check: 00 ..
Name: ENSP00000322061/1-843 Len: 877 Check: 6684 Weight: 1.00
Name: ENSBTAP00000047583/1-843 Len: 877 Check: 2864 Weight: 1.00
Name: bmy_06106T0/1-783 Len: 877 Check: 7593 Weight: 1.00
Name: BACU014995/1-843 Len: 877 Check: 6639 Weight: 1.00
Name: ENSTTRP00000010373/1-843 Len: 877 Check: 7197 Weight: 1.00
//
1 50
ENSP00000322061/1-843 ---------- -----MKVIS LFILVGF-IG EFQS------ -------FSS
ENSBTAP00000047583/1-843 ---------- -----MKAIT LLFLVGF-IG EFQV------ -------FSS
bmy_06106T0/1-783 MFSQNYTSKQ SQLTVAKAWG KMLSHGFRLF DLESRNEPPG SDLSKSFIEN
BACU014995/1-843 ---------- -----MKAIS LFFLVGF-IG EFQV------ -------FSS
ENSTTRP00000010373/1-843 ---------- -----MKAIS LFFLVGF-IG EFQV------ -------FSS
51 100
ENSP00000322061/1-843 ASSPVNCQWD FYAPWSECNG CTKTQTRRRS VAVYGQYGGQ PCVGNAFETQ
ENSBTAP00000047583/1-843 ASSPINCQWG SYAPWSECNG CTKTQTRRRS IAVYGQYGGH SCVGSAFETQ
bmy_06106T0/1-783 ASSPVNCQWA SYAPWSECNG CTKTQTRRRS IAVYGQYGGY PCVGSAFEPQ
BACU014995/1-843 ASSPVNCQWA SYAPWSECNG CTKTQTRRRS VAVYGQYGGH PCVGSAFEPQ
ENSTTRP00000010373/1-843 ASSPVNCQWA SYAPWSECNG CTKTQTRRRS VAVYGQYGGH PCVGSAFEPQ
101 150
ENSP00000322061/1-843 SCEPTRGCPT EEGCGERFRC FSGQCISKSL VCNGDSDCDE DSADEDRCED
ENSBTAP00000047583/1-843 PCQPTRGCPT EDGCGERFRC FSGQCISKSL VCNGDSDCEE DGADEDRCED
bmy_06106T0/1-783 SCEPTRGCPT EEGCGERFRC FSGQCISRSL VCNGDPDCEE DSADEDRCED
BACU014995/1-843 SCEPTRGCPT EEGCGERFRC FSGQCISRSL VCNGDSDCEE DGADEDKCED
ENSTTRP00000010373/1-843 SCEPTRGCPT EEGCGERFRC FSGQCISRSL VCNGDSDCEE DSADEDRCED
151 200
ENSP00000322061/1-843 SERRPSCDID KPPPNIELTG NGYNELTGQF RNRVINTKSF GGQCRKVFSG
ENSBTAP00000047583/1-843 AESRPACDKD KPPPNIELTG RGYNALTGQF RNQVLNTKSF GGQCRKVYSG
bmy_06106T0/1-783 SESRPSCDLD KPPPNIELTG HGYNALTGQF RNKVLNTKSF GGQCRK----
BACU014995/1-843 SESRPSCDLD KPPPNIELTG HGYNALTGQF RNKVLNTKSF GGQCRKVFSG
ENSTTRP00000010373/1-843 SESRPSCDLD KPPPNIELTG QGYNALTGQF RNKVLNTKSF GGQCRKVFSG
201 250
ENSP00000322061/1-843 DGKDFYRLSG NVLSYTFQVK INNDFNYEFY NSTWSYVKHT STEHTSSSRK
ENSBTAP00000047583/1-843 DGRDFYRLSG NILSYTFQVK INNDFNNEFY NSTWAYVKET STEHSSSSKG
bmy_06106T0/1-783 ---------- --------VK INNDFNNEFY NSTWSYVKHT STEHSSSSKG
BACU014995/1-843 DGRDFYRLSG NILSYTFQVK INNDFNYEFY NSTWSYVKHT STEHSSSSKG
ENSTTRP00000010373/1-843 DGRDFYRLSG NILSYTFQVK INNDFNYEFY NSTWSYVKHT STEHSSSSRG
251 300
ENSP00000322061/1-843 RSFFRSSSSS SRSYTSHTNE IHKGKSYQLL VVENTVEVAQ FINNNPEFLQ
ENSBTAP00000047583/1-843 RFLFFSSSSS SHGYSSNTNI LTKKKSYQLL VLQNTVEVAQ FINNNPEFLQ
bmy_06106T0/1-783 RFLFFSSSSS SYSYSSNMEK IHKEKSYQLL VLQNTVEVAQ FINNNPDFLQ
BACU014995/1-843 RFLFFSSSSS SYSYSSNMEE IHKEKSYQLL VLQNTVEVAQ FINNNPDFLQ
ENSTTRP00000010373/1-843 RFLFFSSSSS SYSYSSGTEK ILKEKSYQLL VLQNTVEVAQ FINNNPDFLQ
301 350
ENSP00000322061/1-843 LAEPFWKELS HLPSLYDYSA YRRLIDQYGT HYLQSGSLGG EYRVLFYVDS
ENSBTAP00000047583/1-843 LAESFWKELS YLPSLYDYSA YRRLIDQYGT HYLQSGSLGG EYKVIFHMDS
bmy_06106T0/1-783 LAESFWKELS YLPSLYDYSA YRRLIDQYGT HYLQSGSLGG EYKVIFYLDS
BACU014995/1-843 LAESFWKELS YLPPLYDYSA YRRLIDQYGT HYLQSGSLGG EYKVIFYLDS
ENSTTRP00000010373/1-843 LAESFWKELS YLPSLYDYSA YRRLIDQYGT HYLQSGSLGG EYKVIFYLDS
351 400
ENSP00000322061/1-843 EKLKQNDFNS VEEKKCKSSG WHFVVKFSSH GCKELENALK AASGTQNNVL
ENSBTAP00000047583/1-843 EKVKKFDFHS EDKRKCASSH FQFLFTSSKQ KCTTMEEVLK SVSENEGNLL
bmy_06106T0/1-783 EKIKQSGLSS EEKKKCASSH IXFLFKSSEH TCKQMEETLK LVSGAQGNVL
BACU014995/1-843 EKIKQSGLSS EEKKKCASSH INFLFKLSEH TCKQMEETLK LVSGAQGNVL
ENSTTRP00000010373/1-843 EKIKQSAFGS EKKKKCASSH IKFLFKSSEH ACKEMEEALK LAAGTQGNVL
401 450
ENSP00000322061/1-843 RGEPFIRGGG AGFISGLSYL ELDNPAGNKR RYSAWAESVT NLPQVIKQKL
ENSBTAP00000047583/1-843 RGVPFVRGGH SGFLAGLSYL DLNNPAGNKR RYSQWAGSVP DLPEVIKQKL
bmy_06106T0/1-783 RGVPFIRGGR PGLVSGLSYL ELDNPAGNKW RYSRWAGSVT ELPQVIKQKL
BACU014995/1-843 RGDPFVRGGR PGLVSGLSYL ELDNPAGNKW RYSRWAGSVT ELPQVIKQKL
ENSTTRP00000010373/1-843 RGVPSVRGGR PGLVSGLSYL ELDNPAGNKL RYSRWAGSVT ELPQIIKQKL
451 500
ENSP00000322061/1-843 TPLYELVKEV PCASVKKLYL KWALEEYLDE FDPCHCRPCQ NGGLATVEGT
ENSBTAP00000047583/1-843 TPLYELVKEV PCASVKKLYL KRAIEEYLDE FDPCHCRPCH NGGMATVQGS
bmy_06106T0/1-783 TPLXELVKEV PCASVKRLYL KRAIEEYLDE FDPCHCRPCQ NGGMATVKGT
BACU014995/1-843 TPLYELVKEV PCASVKRLYL RRAIEEYLDE FDPCHCRPCQ NGGMATVKGT
ENSTTRP00000010373/1-843 TPLYELVKEV PCASVKRLYL KRAIEEYLDE FDPCHCRPCQ NGGMATVKGT
501 550
ENSP00000322061/1-843 HCLCHCKPYT FGAACEQGVL VGNQAGGVDG GWSCWSSWSP CVQGKKTRSR
ENSBTAP00000047583/1-843 QCQCYCKPKT SGVACEQGVL LGDQAGGVDG GWNCWSSWGP CVQGKKTRSR
bmy_06106T0/1-783 QCQCHCKPYT FGVACEQGAL VGDQAGGVDG GWSCWSSWGP CVQGKKTRSR
BACU014995/1-843 QCQCHCKPYT FGVACEQGAL VGDQAGGVDG GWSCWSSWGP CVQGKKTRSR
ENSTTRP00000010373/1-843 QCECHCKPYT FGVACEQGAL VGDQAXXXXX XXXXXXXXXX XXXXXXXXXX
551 600
ENSP00000322061/1-843 ECNNPPPSGG GRSCVGETTE STQCEDEELE HLRLLEPHCF PLSLVPTEFC
ENSBTAP00000047583/1-843 QCNNPSPSAG GKSCIGETSE TRQCEDGELE HLRLLEPHCF PLSLVPTKFC
bmy_06106T0/1-783 ECNNPPPSEG GKSCIGETSE TRQCEDEELE HLRLLEPHCF PLSLVPTEFC
BACU014995/1-843 ECNNPPPSEG GKSCIGETSE TRQCEDEELE HLRLLEPHCF PLSLVPTEFC
ENSTTRP00000010373/1-843 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXLLEPHCF PLSLVPTEFC
601 650
ENSP00000322061/1-843 PSPPALKDGF VQDEGTMFPV GKNVVYTCNE GYSLIGNPVA RCGEDLRWLV
ENSBTAP00000047583/1-843 SSPPALKDGF VQDEGATFPV GKNIMYTCKE GYSLVGDPVA RCGEDLQWLV
bmy_06106T0/1-783 PSPPALKDGY VQDEGAMFPV GKNIVYTCHE GYSLVGDPVA RCGENLQWLV
BACU014995/1-843 PSPPALKDGY VQDVGAMFPV GKNIVYTCHE GYSLVGDPVA RCGENLQWLV
ENSTTRP00000010373/1-843 PSPPALKDGY VQDEGAMFPV GKNIVYTCNE GYSLVGDPVA RCGENLQWLV
651 700
ENSP00000322061/1-843 GEMHCQKIAC VLPVLMDGI- -QSHPQKPFY TV---GEKVT VSCSGGMSLE
ENSBTAP00000047583/1-843 GNMHCQKIAC VLPALMDGI- -QSHPHKPFY TI---GEKVT ISCSGGRSLE
bmy_06106T0/1-783 GKMHCQKMEN IMFVTIKNKX EENHTCILFY MIFLFLEXII FNSMLKFGFY
BACU014995/1-843 GKMHCQKIAC VLPALMDGI- -QSHPHKPFY TV---GEKVT FSCSGGRSLE
ENSTTRP00000010373/1-843 GKMHCQKIAC VLPALMDGI- -QSHPHKPFY TV---GEKVT FSCSGGRSLE
701 750
ENSP00000322061/1-843 GPSAFLCGSS LKWSPEMKNA RCVQKENPLT QAVPKCQRWE KLQNSRCVCK
ENSBTAP00000047583/1-843 GPSTFLCSSS LKWSPEVKDV QCVQREAPLT PKVPKCQPWE KLQNSRCVCK
bmy_06106T0/1-783 GEDEVVDSMP L-WHRKCLNV SAGRN----- ---------- --------CR
BACU014995/1-843 GPSTFLCGSS LKWSPEMKNV QCVQKDAPLA PEVPECQRWE KLQNSRCVCK
ENSTTRP00000010373/1-843 GPSTFLCGSS LKWSPEMKNV QCVHKDAPLA PEVPECQRWE KLQNSRCVCK
751 800
ENSP00000322061/1-843 MPYECGPSLD VCAQDERSKR ILPLTVCKMH VLHCQGRNYT LTGRDSCTLP
ENSBTAP00000047583/1-843 MPYECGSSLG VCARDERSKR ILPLTVCKMH VLQCQGRNYT VAGRESCTLP
bmy_06106T0/1-783 IQ--DVSSLD VCARDERSKR ILPLTVCKMH VLQCQGRNYT VAGRETCTLP
BACU014995/1-843 MPYECGSSLD VCARDERSKR ILPLTVCKMH VLQCQGRNYT VAGRESCTLP
ENSTTRP00000010373/1-843 MPYECGSSLD VCARDERSKR ILPLTVCKIH VLQCQGRNYT VAGRESCTLP
801 850
ENSP00000322061/1-843 ASAEKACGAC PLWGKCDAES SKCVCREASE CEEEGFSICV EVNGKEQTMS
ENSBTAP00000047583/1-843 ASAEKACGVC PLWEKCDAEG SECVCRAASE CEEAGFSVCV EVNGREQTMT
bmy_06106T0/1-783 ASAEKACGAC PLWGKCDG-- ---------- ---------- ----------
BACU014995/1-843 ASAEKACGVC PLWGKCDAQS SKCVCRAASE CEETGFSVCV EANGRERTMT
ENSTTRP00000010373/1-843 ASAEKACGVC PLWGKCDAQS SKCVCRAASE CEETGFSVCV EANGRERTMT
851 900
ENSP00000322061/1-843 ECEAGALRCR GQSISVTSIR PCAAETQ
ENSBTAP00000047583/1-843 ECEAGVLRCR GLSISVTGIR PCAAEAA
bmy_06106T0/1-783 ---------K GHFIFVT-IK MLK----
BACU014995/1-843 ECEAGVLRCQ GQIISVTSIR PCAAEAP
ENSTTRP00000010373/1-843 ECEAGVLRCR GQSISVTSIR PCAAEAP