KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:22 2014 Check: 00 .. Name: ENSP00000263932/1-595 Len: 1137 Check: 1642 Weight: 1.00 Name: ENSBTAP00000047653/1-567 Len: 1137 Check: 5623 Weight: 1.00 Name: bmy_12767T0/1-734 Len: 1137 Check: 5908 Weight: 1.00 Name: BACU002968/1-1053 Len: 1137 Check: 7324 Weight: 1.00 Name: ENSTTRP00000003297/1-589 Len: 1137 Check: 8037 Weight: 1.00 // 1 50 ENSP00000263932/1-595 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047653/1-567 ---------- ---------- ---------- ---------- ---------- bmy_12767T0/1-734 ---------- ---------- ---------- ----MSGVSA RGWGELRPSL BACU002968/1-1053 MVETRDLAQL RQLNLELLRQ LWVGQDAVRR CVAKAASESS LGSSSSYDSE ENSTTRP00000003297/1-589 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000263932/1-595 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047653/1-567 ---------- ---------- ---------- ---------- ---------- bmy_12767T0/1-734 DPTYISGNGW GERGSAP--- ----PWGREG ASPSPI---- -------SPT BACU002968/1-1053 MPSSQEASSV ASRASCPRDA HQGDPCDRDG ASSGVVSLPP AKCLHQESPG ENSTTRP00000003297/1-589 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000263932/1-595 -----MRVLL AALGL----- ---------- ---------- ---------- ENSBTAP00000047653/1-567 ---------- ---------- ---------- ---------- ---------- bmy_12767T0/1-734 RERRPPSSLL PSWGS----- ---------- ---------- ---------- BACU002968/1-1053 PRRPHSAPLL ATSGLSDPEL SAELDSLDTQ EAQALKSILA QRSKLSEPRV ENSTTRP00000003297/1-589 -----MRALR AVSGL----- ---------- ---------- ---------- 151 200 ENSP00000263932/1-595 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047653/1-567 ---------- ---------- ---------- ---------- ---------- bmy_12767T0/1-734 ---------- ---------- ---------- ---------- ---------- BACU002968/1-1053 TNKESPVPEK SWRLRPCLGY DWIAGSLDNS SPVTSKPEAF FSKLQKFREA ENSTTRP00000003297/1-589 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000263932/1-595 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047653/1-567 ---------- ---------- ---------- ---------- ---------- bmy_12767T0/1-734 ---------- ---------- ---------- ---------- ---------- BACU002968/1-1053 NKEECICSDP ESQFLGLQES GAVEGDHECV YCYRVNRRLF LVPSDPGTPC ENSTTRP00000003297/1-589 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000263932/1-595 ---------- ---------- ----LFLGAL R--------- ---------- ENSBTAP00000047653/1-567 ---------- ---------- ---------- ---------- ---------- bmy_12767T0/1-734 ---------- ---------- -------GGL Q--------- ---------L BACU002968/1-1053 RLCRTPRDQR GPETLAEPAQ VRVSIPLSVL DPPHRYRIHR RKSFDASDTL ENSTTRP00000003297/1-589 ---------- ---------- ----LLLGVL R--------- ---------- 301 350 ENSP00000263932/1-595 AFP------- ---------- ---------- ---------- ---------- ENSBTAP00000047653/1-567 ---------- ---------- ---------- ---------- ---------- bmy_12767T0/1-734 DIPAEIPLSL G--------- ---------- ---------- ---------- BACU002968/1-1053 ALPRHCLLGW DILPPKSEKS SAPKSLDLWS SVSSEAQRRK LSAASLSHRV ENSTTRP00000003297/1-589 ALP------- ---------- ---------- ---------- ---------- 351 400 ENSP00000263932/1-595 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047653/1-567 ---------- ---------- ---------- ---------- ---------- bmy_12767T0/1-734 ---------- ---------- ---------- ---------- ---------- BACU002968/1-1053 ERNDGTQRMS QDGDILDSGW TGGWMAPQPP VPGVHEGHDI IARKKSPVSF ENSTTRP00000003297/1-589 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000263932/1-595 ---------- --QDRPFEDT CHGNPSHYYD KAVRRCCYRC PMGLFPTQQC ENSBTAP00000047653/1-567 ---------- --QRRAPEDD CLGDLSRYYD KAARKCCHRC REGYSPKQLC bmy_12767T0/1-734 ---------- --TGRVSKDA CGGDSSRYYN EAAGKCCYRC PDRRSLKELC BACU002968/1-1053 PEKASHRGLG MSGGRVSKDA CGGDSGRYYN EAAGKCCYRC PERRSLKELC ENSTTRP00000003297/1-589 ---------- --QXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXRSLKELC 451 500 ENSP00000263932/1-595 PQRPTDCRKQ CEPDYYLDEA DRCTACVTCS RDDLVEKTPC AWNSSRVCEC ENSBTAP00000047653/1-567 PEGSHHCERQ CLHDYYLDSN DRCTACVSCS GEDLVEKKPC SRNSSRVCEC bmy_12767T0/1-734 PEGPDDCRKQ CDPDYYLDRN GRCTACVSCS GDDLVEKKPC SWNSTRVCEC BACU002968/1-1053 PEGPDDCRKQ CDPDYYLDRN GRCTACVSCS GDDLVEKKPC SWNSTRVCEC ENSTTRP00000003297/1-589 PEGPDDCRKQ CDPDYYLDRN GRCTACVSCS GDDLVEKKPC SWNSTRVCEC 501 550 ENSP00000263932/1-595 RPGMFCSTSA VNSCARCFFH SVCPAGMIVK FPG------- ---------- ENSBTAP00000047653/1-567 RAGMFCGTSV VNSCARCIRH SVCPEGMVVK LQG------- ---------- bmy_12767T0/1-734 RTGMFCGTSV INSCARCLPH SVCPTGMVVK FQGEYPHCPG PRSVPTLPPP BACU002968/1-1053 RTGMFCGTSV INSCARCLPH SVCPTGMVVK FQG------- ---------- ENSTTRP00000003297/1-589 RTGMFCGTSV VNSCARCLPH SVCPTGMVVK FQG------- ---------- 551 600 ENSP00000263932/1-595 ---------- ---------- -------TAQ KNTVCEPASP ---------- ENSBTAP00000047653/1-567 ---------- ---------- -------TAQ RDTVCEPAPP ---------- bmy_12767T0/1-734 PDVPTTLHLP PPPSCWTDHI SYHDDARDAN GGPCCPFPAP RAQRRGTLSV BACU002968/1-1053 ---------- ---------- -------TAQ RNTVCEPPSP ---------- ENSTTRP00000003297/1-589 ---------- ---------- -------TAQ RNTVCELPSP ---------- 601 650 ENSP00000263932/1-595 ---------- --------GV SPAC-ASPEN CKEP-----S SGTIPQAKPT ENSBTAP00000047653/1-567 ---------- --------GA SPNCSASPQD CKGP-----T SGTIPQAKPT bmy_12767T0/1-734 SRLPQGPPPT AAPAHRTAGP LPDSPCPIRK IASPISRFLP SSTIPQAKPT BACU002968/1-1053 ---------- --------GT TPNCGASPQD CKAP-----A SSTIPQAKPT ENSTTRP00000003297/1-589 ---------- --------GA SPNCSASPQD CKAP-----A SSTIPQAKPT 651 700 ENSP00000263932/1-595 PVSPATSSAS TMPVRGGTRL AQEAASKLTR APDSPSSVGR PSSDPGLSPT ENSBTAP00000047653/1-567 LTSPASPGAR TMLLGGDIPL TPEDASKMT- -PNSSSFVVK LNPDPGLTLQ bmy_12767T0/1-734 LTSPASSDAR TTLLGGGTPL APEDASKIT- -AHSSSSVGK LSPDPGLTLQ BACU002968/1-1053 LTSPASSDAR TTLLGGGTPL APEDASKIT- -AHSSSSVGK LNPDPGLTLP ENSTTRP00000003297/1-589 LTSPASSDAR TTLLGGGAPL APEDASEIT- -AHSSSSVGR LSPDPGLTLQ 701 750 ENSP00000263932/1-595 QPCPEGSGDC RKQCEPDYYL DEAGRCTACV SCSRDDLVEK TPCAWNSSRT ENSBTAP00000047653/1-567 PPCPRGSADC RKQCNHDYYL DRDGRCKACV TCSGDGLVEK TPCTWNSSRV bmy_12767T0/1-734 QLCPQGSADC RKQCDPDYYL DRDGRCTACV SCSGDHLVEK TPCMWNSSRV BACU002968/1-1053 QLCPQGSADC RKQCDPDYYL DRDGRCTACV SCSGDHLVEK TPCMWNSSRV ENSTTRP00000003297/1-589 QPCPQGSADC RKQCDPDYYL DRDGRCTACV SCSGDHLVEK TPCMWNSSRV 751 800 ENSP00000263932/1-595 CECRPGMICA TSATNSRARC VPYPICAAET VTKPQDMAEK DTTFEAPPLG ENSBTAP00000047653/1-567 CECQPGMFCA TPVTNSCARC VTRPNCPPGM VTKLQGMAET GTTYEPLPPG bmy_12767T0/1-734 CECRPGMFCA TSATNSCARC VTRPICPPGM VTKLQG---- ---------- BACU002968/1-1053 CECRPGMFCA TSATNSCARC VTHPVCPPGM VTKLQGTAER DTTYEPPPPG ENSTTRP00000003297/1-589 CECRPGMFCA TSASNSCARC VIRPICPPGM VTKLQGTAER DTTYEPPPPG 801 850 ENSP00000263932/1-595 TQPDCNPTPE NGEAPASTSP TQSLLVDSQA SKT------- ----LPIPTS ENSBTAP00000047653/1-567 SPPDCSTSPE DREAPASPTP SLVSLADSLT GKD------- ----TPGSTS bmy_12767T0/1-734 ---------- -----KHPTP SLISLADSLT GKEHGGDVTH VRGRASISTS BACU002968/1-1053 THSNCSTNAE DSGVPASPTP SLISLADSLT GKEHGGDVTH VRGRASISTS ENSTTRP00000003297/1-589 THSNCSTNAE DSGVPASPTP SLISLADSLT GKT------- ----SPISTS 851 900 ENSP00000263932/1-595 APVALSSTGK PVLDA----- ---------- ---------- ---GPVLFWV ENSBTAP00000047653/1-567 APISFSSTGK PALVS----- ---------- ---------- ---GPVLFWV bmy_12767T0/1-734 TPISFSSTGK PTLVSGPRLT AMMQSSGATS ARAGESAGRL CVPGPVLFWV BACU002968/1-1053 TPISFSSTGK PTLVSGPRLT AMMQTSGATS ARAGESAGRL CVPGPVLFWV ENSTTRP00000003297/1-589 TPISFSSTGK PTLVS----- ---------- ---------- ---GPVLFWV 901 950 ENSP00000263932/1-595 ILVLVVVVGS SAFLLCHRRA CRKRIRQKLH LCYPVQTSQP KLELV----- ENSBTAP00000047653/1-567 ILMLVVVVSF SSFVLCHRRA CRKWIGQKLH LCYPVQTFRP TLEPV----- bmy_12767T0/1-734 ILTLVVVVSF GSFLLCHRRG CRKWMGQKLH LCYPVQTFQP KLEPM----- BACU002968/1-1053 ILTLVVVVSF GSFLLCHRRG CRKWMGQKLH LCYPVQTFQP KLEPVGCLPP ENSTTRP00000003297/1-589 ILTLVVVVSF GSFLLFHRRG CRKWMGQKLH LCYPVQTFQP KLEPV----- 951 1000 ENSP00000263932/1-595 ---------- DSRPRRSS-- ---------- ------TQLR SGASVTEPVA ENSBTAP00000047653/1-567 ---------- DSKPGRNP-- ---------- ------IQLT KSVSVADPGN bmy_12767T0/1-734 ---------- DSRPGRNP-- ---------- ------T-LI RSVSVAEPGS BACU002968/1-1053 SAHPGAQRST QTVPPRSPGP VESLAVARFL TWAPEHSLLI RRVSVAEPGS ENSTTRP00000003297/1-589 ---------- DSRPGRNL-- ---------- ------TQLI GRVSVAEPGL 1001 1050 ENSP00000263932/1-595 EERGLMSQPL METCHSVGAA YLESLPLQDA SPAGGPSSPR DLPEPRVSTE ENSBTAP00000047653/1-567 EEQGLLSRPA METC------ -LESLRLLEA SPVSSPPSPT DLPEPRGTME bmy_12767T0/1-734 EEQGLMSPPA VETCPN---- -LESLQLLEA SPASSPSTPM DLPEPRGTTE BACU002968/1-1053 EEQGLMSPPA VETCPN---- -LESLQLLEA SPASSPSTPM DLPEPRGTTE ENSTTRP00000003297/1-589 EEQGLTSPPA VETCPN---- -LESLQLLEA SPASSPSTSV DLPEPRGTAE 1051 1100 ENSP00000263932/1-595 HTNNKIEKIY IMKADTVIVG TVKAELPEGR GLAGPAEPEL EEELEADHTP ENSBTAP00000047653/1-567 HTNNRIENIY IMKADTVIVG TVKAEVPEGQ GPVGPAGPEL EEELETDYAS bmy_12767T0/1-734 HTNNRIENIY IMKADTVIVG TVKAKVPEGQ GPVGPAGPEF EEDLEVDRAP BACU002968/1-1053 HTNNRIENIY IMKADTVIVG TVKAKVPEGQ GPVGPAGPEF EEDLEVDHAP ENSTTRP00000003297/1-589 HTNNRIENIY IMKADTVIVG TVKAKVPEGQ GPVGPAGSEF EEDLEVDHAP 1101 1150 ENSP00000263932/1-595 HYPEQETEPP LGSCSDVMLS VEEEGKEDPL PTAASGK ENSBTAP00000047653/1-567 HYPEQETEPP LGSCGDVMFS VEEEGKEDPL PTTVSDK bmy_12767T0/1-734 HYPEQETEPL TGSCGDVMFS VEEEGKEDPL PTTASGK BACU002968/1-1053 HYPEQETEPL TGSCGGVMFS VEEEGKEDPL PTTASGK ENSTTRP00000003297/1-589 HYPEQETEPL AGSCGDVMFS VEEEGKEDPL PTTASGK