KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:22 2014 Check: 00 .. Name: ENSBTAP00000047662/1-616 Len: 783 Check: 6932 Weight: 1.00 Name: ENSTTRP00000013706/1-762 Len: 783 Check: 9182 Weight: 1.00 Name: ENSP00000306678/1-765 Len: 783 Check: 2033 Weight: 1.00 Name: bmy_20246T0/1-731 Len: 783 Check: 7141 Weight: 1.00 Name: BACU004011/1-735 Len: 783 Check: 522 Weight: 1.00 // 1 50 ENSBTAP00000047662/1-616 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013706/1-762 RAADPMAAGV EQRLGGLPVF TRDDFEGTWR PVASGGFSQV FQARHKRWRT ENSP00000306678/1-765 ----MAADPT ELRLGSLPVF TRDDFEGDWR LVASGGFSQV FQARHRRWRT bmy_20246T0/1-731 -----MAAGV EQRLGGLPVF TRDDFEGTWR PVASGGFSQV FQARHKRWRT BACU004011/1-735 -----MAAGV EQRLGGLPVF TRDDFEGTWR PVASGGFSQV FQARHKRWRT 51 100 ENSBTAP00000047662/1-616 ---------- ---------- -LIEEAAKME KIKFQHVVSI CGVCRQPLGV ENSTTRP00000013706/1-762 EYAIKCSRCL QPDTISSDVN CLIEEAIKM- -IKFQYIVSI YGVCEQPLG- ENSP00000306678/1-765 EYAIKCAPCL PPDAASSDVN YLIEEAAKMK KIKFQHIVSI YGVCKQPLGI bmy_20246T0/1-731 EYAIKCSRCL QPDTTSSDVN CLIEEATKME KIKFQHIVSI YGVCEQPLGI BACU004011/1-735 EYAIKCSRCL QPDTTSSDVN CLIEEATKME KIKFQHIVSI YGVCEQPLGI 101 150 ENSBTAP00000047662/1-616 VMEFMANDSL EKMLPTHSLG WQLKVHTIRE TSLAVNFLRS IKPPLLHLDL ENSTTRP00000013706/1-762 VMEFMANGSL EKMLPTHSLC WQLKFRIIHE TGLAMNFLHS MNPPLLHLDL ENSP00000306678/1-765 VMEFMANGSL EKVLSTHSLC WKLRFRIIHE TSLAMNFLHS IKPPLLHLDL bmy_20246T0/1-731 VMEFMANGSL EKMLPTQSLC WQLKFRIIHE TGLAMNFLHS INPPQFHLDL BACU004011/1-735 VMEFMANGSL EKMLPTHSLC WQLKFRIIHE TGLAMNFLHS INPPLFHLDL 151 200 ENSBTAP00000047662/1-616 KPGNILLDSC LHIKVSDFGL SKRMEQSTQM QSIKRSALQG TLSYTLPPPT ENSTTRP00000013706/1-762 KPGNILLDSH MHVKVSDFGL SKWMEQSAWM QYIKRSALQG TLSY-IPP-- ENSP00000306678/1-765 KPGNILLDSN MHVKISDFGL SKWMEQSTRM QYIERSALRG MLSY-IPP-- bmy_20246T0/1-731 KPGNILLDSH MHVKVSDFGL SRWMEQLTRM QYIKRSALHG TLSY-IPP-- BACU004011/1-735 KPGNILLDSH MHVKVSDFGL SRWMEQLTRM QYIKRSALQG TLSY-IPP-- 201 250 ENSBTAP00000047662/1-616 KMFLESNKGP GPKYDVYSFG IMIWEMLTQK KPYPDS---- -----FNIMT ENSTTRP00000013706/1-762 EMFPESNKGP GPKYDVYSFG IVIWEILTQK KPYSG----- -----FNMMT ENSP00000306678/1-765 EMFLESNKAP GPKYDVYSFA IVIWELLTQK KPYSG----- -----FNMMM bmy_20246T0/1-731 EMFLESNKGP GPKYDVYSFG IVIWEILTQK KPYSAPAQPG PPLADFNMMT BACU004011/1-735 EMFLESNKGP GPKYNVYSFG IVIWQILTQK KPYSG----- -----FNMMT 251 300 ENSBTAP00000047662/1-616 IIIQVATGRR PSLQPVSDEW SAESQQMVDL MRRCWDQEPK KKPAFQELTS ENSTTRP00000013706/1-762 IMVRVAAGLR PSLQPVSDEW PAEAQHMVDL MRRCWDQDPK KRPCFPDITV ENSP00000306678/1-765 IIIRVAAGMR PSLQPVSDQW PSEAQQMVDL MKRCWDQDPK KRPCFLDITI bmy_20246T0/1-731 IMVRVAAGLR PSLQPVSDEW PAEAQQMVDV MRRCWDQDPK KRPCFPDIAV BACU004011/1-735 IMVRVAAGLR PSLQPVSDEW PAEAQQMVDL MRRCWDQDPK KRPCFPDIAV 301 350 ENSBTAP00000047662/1-616 LQRQTCCFRC SRVRWPTVRA RPWPGKRPAQ RAGPGEVR-- ---------M ENSTTRP00000013706/1-762 ETDTLLSLLQ SPVADPESEA LARKVSCTAC LRRPREVSEE ISQELTDX-X ENSP00000306678/1-765 ETDILLSLLQ SRVAVPESKA LARKVSCKLS LRQPGEVNED ISQELMDS-D bmy_20246T0/1-731 ETDMLLSLLQ SPVADPESEA LARKMSCTVC LCRRGEVSEE ISQELTDS-- BACU004011/1-735 ETDMLLSLLQ SPVVDPESEA LARKVSCTAC LCRPREVSEE ISQELTDSAD 351 400 ENSBTAP00000047662/1-616 CPGGASSLAG TEDAGAAKAL GHSFLGRASP AQGLPLDTAG GGHERGGVSW ENSTTRP00000013706/1-762 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000306678/1-765 SGNYLKRALQ LSDRKNLVPR DEELCIYENK VTPLHFLVAQ GSVEQVRLLL bmy_20246T0/1-731 ---------- --DSESLVLS DEQLRIRENK VTPLHFLVAQ GRLERVRLLL BACU004011/1-735 SGDYLKRVLP LLDSESLVLS DEQLRIRENK VTPLHFLVAQ GCLERVRLLL 401 450 ENSBTAP00000047662/1-616 RKEI----VA FNSNTPLGKA GRNGS----- --LSASGGVR IMER--HHKF ENSTTRP00000013706/1-762 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000306678/1-765 AHEVDVDCQT ASGYTPLLIA AQDQQPDLCA LLLAHGADAN RVDEDGWAPL bmy_20246T0/1-731 AQEVHVDCQT ACGYTPLLVA TQDQHPDLCA LLLKHGADAN LVDEDGWAPL BACU004011/1-735 AQEVHVDCQT ACGYTPLLVA TQDQHPDLCA LLLKHGANAN LADEDGWAPL 451 500 ENSBTAP00000047662/1-616 IFSSDSGDYL KRVLRLSDSE SLVPSDEQ-- -PLHLAAQIN PENVARLLVS ENSTTRP00000013706/1-762 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXHLAVQNN FENVARLLVS ENSP00000306678/1-765 HFAAQNGDDG TARLLLDHGA CVDAQEREGW TPLHLAAQNN FENVARLLVS bmy_20246T0/1-731 HFAAQNGDDR TARLLLDHGA RVDAQEHEGW TPLHLAXQNN FENVARLLVS BACU004011/1-735 HFAAQNGDDR TARLLLDHGA RVDAQEHEGW TPLHLAVQNN FENVARLLVS 501 550 ENSBTAP00000047662/1-616 HQADPNLREA EGKTPLHVAT YFGHVSLVKL PTAQGAELDA WQRNLRRPLH ENSTTRP00000013706/1-762 CQADPNL-EA EGKTPLHVA- YFGHVSLVKL LTGQG-KLDA RQRNLRTPLH ENSP00000306678/1-765 RQADPNLHEA EGKTPLHVAA YFGHVSLVKL LTSQGAELDA QQRNLRTPLH bmy_20246T0/1-731 RQADPNLQEA EGKTPLHVAA YFGHVSLVKL LTGQGAKLDA RQRNLRTPLH BACU004011/1-735 RQADPNLQEA EGKTPLHVAA YFGHVSLVKL LTGQGAKLDA RQRNLRTPLH 551 600 ENSBTAP00000047662/1-616 LAVERGKVRA TQHLLKSGAA PDALDQSGYS PLSTVPARGK YVICKMLLRY ENSTTRP00000013706/1-762 LAVERGKVRA IQHLLKSGAA ADALDQRGYS PLHIATARGK HLVGKMLLRY ENSP00000306678/1-765 LAVERGKVRA IQHLLKSGAV PDALDQSGYG PLHTAAARGK YLICKMLLRY bmy_20246T0/1-731 LAVERGKVRA IQHLLKSGAA ADALDQRGYS PLHIATTRGK YLIGKMLLRY BACU004011/1-735 LVVERGKVRA IQHLLKSGAA ADALDQRGYS PLHIATTRGK HLIGKMLLRY 601 650 ENSBTAP00000047662/1-616 GASLELLTQQ GWTPLHLAAY KGHLEIIHLL AESQ------ ---------- ENSTTRP00000013706/1-762 GASLELPTHQ GWTPLHLAAY KGHLEIIHLL AESHADVGAP GGMNWTPLHL ENSP00000306678/1-765 GASLELPTHQ GWTPLHLAAY KGHLEIIHLL AESHANMGAL GAVNWTPLHL bmy_20246T0/1-731 GASLELPTHQ GWTPLHLAAY KGHLEIIHLL AESHADVGAP GGMNWTPLHL BACU004011/1-735 GASLELPTHQ GWTPLHLAAY KGHLEIIHLL AESHADVGAP GGMNWTPLHL 651 700 ENSBTAP00000047662/1-616 ---------- ----KCGADP SAAEQSGWTP LHLAVQRGSF LSVIHLLEHR ENSTTRP00000013706/1-762 AARHGAEVVV SALLQCGADP NAPEQSGWTP LHLAVQRGAF LSVINLLEHH ENSP00000306678/1-765 AARHGEEAVV SALLQCGADP NAAEQSGWTP LHLAVQRSTF LSVINLLEHH bmy_20246T0/1-731 AARHGAEVVV SALLQCGADP NAPEQSGWTP LHLAVQRGAF LSVINLLEHR BACU004011/1-735 AAHHGAEVVV SALLQCGADP NAPEQSGWTP LHLAVQRGAF LSVINLLEHR 701 750 ENSBTAP00000047662/1-616 VDVHACNKVG WTPACLAALK GNMAILKVLV KAGAQLDIQD GVSCTPLQLA ENSTTRP00000013706/1-762 ADVHARNKVG WTPAHLAALK GNMAILRVLV KAGAQLDTQD GVGCTPLQLA ENSP00000306678/1-765 ANVHARNKVG WTPAHLAALK GNTAILKVLV EAGAQLDVQD GVSCTPLQLA bmy_20246T0/1-731 ADVHARNKVG WTPAHLAALK GNMAILRVLV KAGAQLDTQD GVGCTPLQLA BACU004011/1-735 ADVHAHNKVG WTPAHLAALK GNMAILRVLV KAGAQLDTQD GVGCTPLQLA 751 800 ENSBTAP00000047662/1-616 LQS------- ---------- ---------- --- ENSTTRP00000013706/1-762 LWS-KQGTVA FLEGKEPSLA ILAGAEPGAQ TEV ENSP00000306678/1-765 LRSRKQGIMS FLEGKEPSVA TLGGSKPGAE MEI bmy_20246T0/1-731 LWS------- ---------- ---------- --- BACU004011/1-735 LWS------- ---------- ---------- ---