KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:23 2014 Check: 00 .. Name: ENSTTRP00000003590/1-482 Len: 501 Check: 4316 Weight: 1.00 Name: ENSP00000247003/1-483 Len: 501 Check: 1903 Weight: 1.00 Name: ENSBTAP00000047676/1-392 Len: 501 Check: 5567 Weight: 1.00 Name: bmy_02645T0/1-467 Len: 501 Check: 7794 Weight: 1.00 Name: BACU016641/1-483 Len: 501 Check: 777 Weight: 1.00 // 1 50 ENSTTRP00000003590/1-482 MAGFAELGLS S-LLEQCRQL GLKQSTPVQL GCIPAILEGR DCLGCAKTGS ENSP00000247003/1-483 MAGFAELGLS SWLVEQCRQL GLKQPTPVQL GCIPAILEGR DCLGCAKTGS ENSBTAP00000047676/1-392 MAGFAELGLS SWLVEQCRQM GLKQPTPVQL GCIPAILEGR DCLGCAKTGS bmy_02645T0/1-467 MAGFAELGLS SWLVEQCRQL GLKQPTPVQL GCIPAILEG- ---------- BACU016641/1-483 MAGFAELGLS SWLVEQCRQL GLKQPTPVQL GCIPAILEGR DCLGCAKTGS 51 100 ENSTTRP00000003590/1-482 GKTAAFVLPI LQKLSEDPYG IFCLVLTPTR ELAYQIAEQF RVLGKPLGLK ENSP00000247003/1-483 GKTAAFVLPI LQKLSEDPYG IFCLVLTPTR ELAYQIAEQF RVLGKPLGLK ENSBTAP00000047676/1-392 GKTAAFVLPI LQKLSEDPYG IFCLVLTPTR ELAYQIAEQF RVLGKPLGLK bmy_02645T0/1-467 ---------- ---------- ---WPLHAHR ELAYQIAEQF RVLGKPLGLK BACU016641/1-483 GKTAAFVLPI LQKLSEDPYG IFCLVLTPTR ELAYQIAEQF RVLGKPLGLK 101 150 ENSTTRP00000003590/1-482 DCIIVGGMDM VAQALELSRK PHVVIATPGR LADHLRSSNT FSIKKIRFL- ENSP00000247003/1-483 DCIIVGGMDM VAQALELSRK PHVVIATPGR LADHLRSSNT FSIKKIRFL- ENSBTAP00000047676/1-392 DCIIVG---- ---------- ---------- ---------- ---------- bmy_02645T0/1-467 DCIIVGGMDM VAQALELSRK PHVVIATPGR LADHLRSSNT FSIKKIRFLD BACU016641/1-483 DCIIVGGMDM VAQALELSRK PHVVIATPGR LADHLRSSNT FSIKKIRFL- 151 200 ENSTTRP00000003590/1-482 ---------- -------VMD EADRLLEQGC TDFTVDLETI LAAVPARRQT ENSP00000247003/1-483 ---------- -------VMD EADRLLEQGC TDFTVDLEAI LAAVPARRQT ENSBTAP00000047676/1-392 ---------- ---------- ---------- ---------- ---------- bmy_02645T0/1-467 SDSALTPDPY PLLLALQVMD EADRLLEQGC TDFTVDLETI LAAVPARRQT BACU016641/1-483 ---------- -------VMD EADRLLEQGC TDFTVDLETI LAAVPARRQT 201 250 ENSTTRP00000003590/1-482 LLFSATLTDT LRELQGLATN QPFFWEAQAP VRTVEQLDQR YLLVPEKVKD ENSP00000247003/1-483 LLFSATLTDT LRELQGLATN QPFFWEAQAP VSTVEQLDQR YLLVPEKVKD ENSBTAP00000047676/1-392 ---------- -----GLATN QPFFWEAQAP VRTVEQLDQR YLLVPEKVKD bmy_02645T0/1-467 LLFSATLTDT LRELQGLATN QPFFWEAQAP VRTVEQLDQR YLLVPEKVKD BACU016641/1-483 LLFSATLTDT LRELQGLATN QPFFWEAQAP VRTVEQLDQR YLLVPEKVKD 251 300 ENSTTRP00000003590/1-482 AYLVHLIQNF QDEHEDWSII IFTNTCKTCQ ILCMMLRKFN FPTVALHSMM ENSP00000247003/1-483 AYLVHLIQRF QDEHEDWSII IFTNTCKTCQ ILCMMLRKFS FPTVALHSMM ENSBTAP00000047676/1-392 AYLVHLIQNF QDEHEDWSII IFTNTCKTCQ ILCMMLRKFN FPTVALHSMM bmy_02645T0/1-467 AYLVHLIQNF QDEHEDWSII IFTNTCKTCQ ILCMMLRKFN FPTVALHSMM BACU016641/1-483 AYLVHLIQNF QDEHEDWSII IFTNTCKTCQ ILCMMLRKFN FPTVALHSMM 301 350 ENSTTRP00000003590/1-482 KQKERFAALS KFKSSIYRIL IATDVASRGL DIPTVQVVIN HNTPGLPKIY ENSP00000247003/1-483 KQKERFAALA KFKSSIYRIL IATDVASRGL DIPTVQVVIN HNTPGLPKIY ENSBTAP00000047676/1-392 KQKERFAALA KFKSSIYRIL IATDVASRGL DIPTVQVVIN HNTPGLPKIY bmy_02645T0/1-467 KQKERFAALA KFKSSIYRIL IATDVASRGL DIPTVQVVIN HNTPGLPKIY BACU016641/1-483 KQKERFAALA KFKSSIYRIL IATDVASRGL DIPTVQVVIN HNTPGLPKIY 351 400 ENSTTRP00000003590/1-482 IHRVGRTARA GRQGQAITLV TQYDIHLVHA IEEQIXXXXX XXXXXXXXXX ENSP00000247003/1-483 IHRVGRTARA GRQGQAITLV TQYDIHLVHA IEEQIKKKLE EFSVEEAEVL ENSBTAP00000047676/1-392 IHRVGRTARA GRQGQAITLV TQYDIHLVHA IEEQIKKKLE EFPVEEAQVL bmy_02645T0/1-467 IHRVGRTARA GRQGQAITLV TQYDIHLVHA IEEQIKKKLE EFSVEEAEVL BACU016641/1-483 IHRVGRTARA GRQGQAITLV TQYDIHLVHA IEEQIKKKLE EFSVEEAEVL 401 450 ENSTTRP00000003590/1-482 XXXXXXXXXX XXXXXXXXXA NFDEKKEINK RKQMILRGKD PDLEAKRKAE ENSP00000247003/1-483 QILTQVNVVR RECEIKLEAA HFDEKKEINK RKQLILEGKD PDLEAKRKAE ENSBTAP00000047676/1-392 QILTQVNVVR RECEIKLEAA NFDEKKEINK RKQMILEGKD PDLEAKRKAE bmy_02645T0/1-467 QILTQVNVVR RECEIKLEAA NFDEKKEINK RKQMILEGKD PDLEAKRKAE BACU016641/1-483 QILTQVNVVR RECEIKLEAA NFDEKKEINK RKQMILEGKD PDLEAKRKAE 451 500 ENSTTRP00000003590/1-482 LAKIKQKNRR FKEKVEQALQ RQKASGAGHR GCPSRAQPEA CLSPAPAQGP ENSP00000247003/1-483 LAKIKQKNRR FKEKVEETLK RQKAGRAGHK GRPPRTPSGS HSGPVPSQGL ENSBTAP00000047676/1-392 LAKIKQKNRR FKEKVEQTLQ RQKASRTDRR GRPPRARPEA SLSLVPAQGP bmy_02645T0/1-467 LAKIKQKNRR FKEKVEQALQ RQKASGAGRR GCPSRAQPEA CLSPAPAQGV BACU016641/1-483 LAKIKQKNRR FKEKVEQALQ RQKASGAGRR GCPSRAQPEA CLSPAPAQGP 501 550 ENSTTRP00000003590/1-482 A ENSP00000247003/1-483 V ENSBTAP00000047676/1-392 A bmy_02645T0/1-467 A BACU016641/1-483 A