KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:23 2014 Check: 00 .. Name: ENSP00000369436/1-361 Len: 943 Check: 5985 Weight: 1.00 Name: ENSTTRP00000001256/1-363 Len: 943 Check: 4891 Weight: 1.00 Name: ENSBTAP00000047681/1-371 Len: 943 Check: 6540 Weight: 1.00 Name: bmy_20961T0/1-550 Len: 943 Check: 2234 Weight: 1.00 Name: BACU001775/1-752 Len: 943 Check: 6890 Weight: 1.00 // 1 50 ENSP00000369436/1-361 MAQP------ ------GDPR RLCRL----- ---------- ---------- ENSTTRP00000001256/1-363 MAAP------ ------ADPR RLCRL----- ---------- ---------- ENSBTAP00000047681/1-371 MAAP------ ------ADPR SLCRL----- ---------- ---------- bmy_20961T0/1-550 MAAP------ ------ADPR RLCRL----- ---------- ---------- BACU001775/1-752 MTRPRSKQQS RRKGNAGCPQ RRPRLRDSHT AEQRRAPAXX XXXXXXXXXX 51 100 ENSP00000369436/1-361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001256/1-363 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047681/1-371 ---------- ---------- ---------- ---------- ---------- bmy_20961T0/1-550 ---------- ---------- ---------- ---------- ---------- BACU001775/1-752 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 101 150 ENSP00000369436/1-361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001256/1-363 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047681/1-371 ---------- ---------- ---------- ---------- ---------- bmy_20961T0/1-550 ---------- ---------- ---------- ---------- ---------- BACU001775/1-752 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 151 200 ENSP00000369436/1-361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001256/1-363 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047681/1-371 ---------- ---------- ---------- ---------- ---------- bmy_20961T0/1-550 ---------- ---------- ---------- ---------- ---------- BACU001775/1-752 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 201 250 ENSP00000369436/1-361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001256/1-363 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047681/1-371 ---------- ---------- ---------- ---------- ---------- bmy_20961T0/1-550 ---------- ---------- ---------- ---------- ---------- BACU001775/1-752 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 251 300 ENSP00000369436/1-361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001256/1-363 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047681/1-371 ---------- ---------- ---------- ---------- ---------- bmy_20961T0/1-550 ---------- ---------- ---------- ---------- ---------- BACU001775/1-752 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 301 350 ENSP00000369436/1-361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001256/1-363 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047681/1-371 ---------- ---------- ---------- ---------- ---------- bmy_20961T0/1-550 ---------- ---------- ---------- ---------- ---------- BACU001775/1-752 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 351 400 ENSP00000369436/1-361 ---------- ---------- ---------- ---------- ----VQEGRL ENSTTRP00000001256/1-363 ---------- ---------- ---------- ---------- ----VQEGRL ENSBTAP00000047681/1-371 ---------- ---------- ---------- ---------- ----VQDGRL bmy_20961T0/1-550 ---------- ---------- ---------- ---------- ----VQEGRL BACU001775/1-752 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 401 450 ENSP00000369436/1-361 RALKEELQAA G--GCPGPAG DTLLHCAARH GHRDVLAYLA EAWGMDIEAT ENSTTRP00000001256/1-363 CALREELRAA GRAGCAGPAR DTLLHCAARH GRREILAYLV EAWDLDIEAA ENSBTAP00000047681/1-371 CTLREELQAA GHAGCAGPAG DTLLHCAARH GRRDVLAYLV EAWDLDIEAA bmy_20961T0/1-550 CALREELRAA GRAGCAGLAR DTLLHCAARH GRREILAYLV EAWDLDIEAA BACU001775/1-752 XALREELRAA GRAGCAGPAR DTLLHCAARH GRREILAYLV EAWDLDIEAA 451 500 ENSP00000369436/1-361 NRDYKRPLHE AASMGHRDCV RYLLGRGAAV DCLKKADWTP LMMACTRKNL ENSTTRP00000001256/1-363 NRDYKRPLHE AASMGHRDCV RYLLGRGAAV ECLKKADWTP LMMACTRRNL ENSBTAP00000047681/1-371 NRDYKRPLHE AASMGHRNCV RYLLGRGAAV DCLKKADWTP LMMACTRRNL bmy_20961T0/1-550 NRDYKRPLHE AASMGHRDCV RYLLGRGAAV DCLKKADWTP LMMACTRRNL BACU001775/1-752 NRDYKRPLHE AASMGHRDCV RYLLGRGAAV DCLKKADWTP LMMACTRRNL 501 550 ENSP00000369436/1-361 GVIQELVEHG ANPLLKNKDG WNSFHIASRE GDPLILQYLL TVCPGAWKTE ENSTTRP00000001256/1-363 EVVQDLVEHG ANPLLKNKDG WNSFHIASRE GDPLILQYLL AVCPAAWKTE ENSBTAP00000047681/1-371 EVIRDLVEHG ANPLLKNKDG WNSFHIASRE GDPLILQYLL AVCPSAWRTE bmy_20961T0/1-550 EVVQDLVEHG ANPLLKNKDG WNSFHIASRE GDPLILQYLL AVCPAAWKTE BACU001775/1-752 EVVQDLVEHG ANPLLKNKDG WNSFHIASRE GDPLILQYLL AVCPAAWKTE 551 600 ENSP00000369436/1-361 SKIRRTPLHT AAMHGHLEAV KVLLKRCQYE PDYRDNCGVT ALMDAIQCGH ENSTTRP00000001256/1-363 SKIGRTPLHT AXXXXXXXXX XXXXXXCQYE PDCRDKCGLT PFMDAIQCGH ENSBTAP00000047681/1-371 SKIGRTPLHT AAMHGCLEAV EVLLQRCQYE PDCRDRCGLT PFMDAVQCGH bmy_20961T0/1-550 SKIGRTPLHT AAMHGCSEAV EMLLQRCQYE PDCRDKCGLT PFMDAIQCGH BACU001775/1-752 SKIGRTPLHT AAMHGCSEAV EMLLQRCQYE PDCRDKCGLT PFMDAIQCGH 601 650 ENSP00000369436/1-361 IDVARLLLDE HGACLSAEDS LGAQALHRAA VTGQDEAIRF LVSELGVDVD ENSTTRP00000001256/1-363 IDVARLLLEK HKACVSAEDS LGAQAIHRAA VTGQNEAVQF LVSELGINVD ENSBTAP00000047681/1-371 TDVARLLLKK HKACVSAEDS LGAQAIHRAA VTGQDEAIRF LVSELGVDVD bmy_20961T0/1-550 IDVARLLLEK HK-------- ----AIHRAA VTGQNEAIQF LVSELGINVD BACU001775/1-752 IDVARLLLEK HKACVSAEDS LGAQAIHRAA VTGQDEAIQF LVSELGINVD 651 700 ENSP00000369436/1-361 VRATSTHLTA LHYAAKEGHT STIQTLLSLG ADINSKDEKN RSALHLACAG ENSTTRP00000001256/1-363 VRAASTHLTA LHYAAKXXXX XXXXXXXXXX XXXXXXXXXX XXXLHLACAG ENSBTAP00000047681/1-371 ARAGSTHLTA LHFAAKEGHV STVQTLLSLG ADINSKDERN RSALHLACAG bmy_20961T0/1-550 VRAASTHLTA LHYAAKEGHV STIQTLLSLG ADINAKDERN RSALHLACAG BACU001775/1-752 VGAASTHLTA LHYAAKEGHV STIQTLLSLG ADINAKDERN RSALHLACAG 701 750 ENSP00000369436/1-361 QHLACAKFLL QSGLKDSEDI TGTLAQQLPR RADVLQGSGH SAMT------ ENSTTRP00000001256/1-363 QHAACVKFLL CSGLEDSLDM TGTLAQQLTR SPDVLQCFNH SATA------ ENSBTAP00000047681/1-371 QHAACVQFLL SSGLQDSPDV TGTLAQHLTR SPNVLQCFNH STMAEGISRD bmy_20961T0/1-550 QHAACVKFLL CSGLGDSLDM TGALAQQLTR SPDVLQCFNH STTAEGVSRG BACU001775/1-752 QHAACVKFLL CSGLGDSPDM TGALAQQLTR SPDVLQCFNH SATAEGVSRG 751 800 ENSP00000369436/1-361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001256/1-363 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047681/1-371 RQ-------- ---------- ---------- ---------- ---------- bmy_20961T0/1-550 KHPSQSVKKG FASITSKTQS PRSVSSGKNS SHALTPVLSI MPGWANSRNV BACU001775/1-752 KQ-------- ---------- ---------- ---------- ---------- 801 850 ENSP00000369436/1-361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001256/1-363 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047681/1-371 ---------- ---------- ---------- ---------- ---------- bmy_20961T0/1-550 QFSVIPRWCW LIFIPNNQIN VLVETRLGPL NHTLSPSAPP PAAVTVSCCS BACU001775/1-752 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000369436/1-361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001256/1-363 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000047681/1-371 ---------- ---------- ---------- ---------- ---------- bmy_20961T0/1-550 RDVFVSLPLG LRMACYVHPY LQVCSHPSCA SALHTRRDDG LSVYAWFSST BACU001775/1-752 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000369436/1-361 ---------- ---------- ---------- ---------- --- ENSTTRP00000001256/1-363 ---------- ---------- ---------- ---------- --- ENSBTAP00000047681/1-371 ---------- ---------- ---------- ---------- --- bmy_20961T0/1-550 RLSIENAPVA WTGLLDAAAK ATREPERAVM IVTFIVAKIV VMI BACU001775/1-752 ---------- ---------- ---------- ---------- ---