KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:25 2014 Check: 00 .. Name: ENSP00000382030/1-1159 Len: 1178 Check: 1855 Weight: 1.00 Name: ENSBTAP00000047693/1-1084 Len: 1178 Check: 1243 Weight: 1.00 Name: bmy_12526T0/1-1104 Len: 1178 Check: 4003 Weight: 1.00 Name: BACU010270/1-1086 Len: 1178 Check: 168 Weight: 1.00 Name: ENSTTRP00000016339/1-1114 Len: 1178 Check: 8942 Weight: 1.00 // 1 50 ENSP00000382030/1-1159 MSLPQPTPRM AELRKPTSSL TPPEDPDSQP PSSKRLCLEE PGGVFKAGWR ENSBTAP00000047693/1-1084 MSLTQRAPQV SELGEPASPL PPADDPDSLP PRSKRPRLEE TGGVSEVEWR bmy_12526T0/1-1104 MSFTQRAPQF VELGEPASPL PPPDDPDSPP PRSKRPRFEE PGGVSEAGWR BACU010270/1-1086 MSFTQRAPQV VELGEPASPL PPPDDPDSPP PRSKRPRLEE PGGVSEAGWG ENSTTRP00000016339/1-1114 MSFTQRAPQV VELGESASPL PPPDDPDSPP PRSKRPRLEE PGGVSEAGWR 51 100 ENSP00000382030/1-1159 LPLVPRLSEA EKVWELSPRP FKGLLVSTNA IFDNSTDSCV EKSVSGKQIC ENSBTAP00000047693/1-1084 LPLVPCLSEV EKVWELSLRP LTALMISTEE IFGNATGSCV KKSVSGKQIY bmy_12526T0/1-1104 LPLVPRLSEA EKVWESSARP FKALLVSAKE IFDNSTDSRV EKSVGEKQMC BACU010270/1-1086 LPLVPRLSEA EKVWESSARP FKALLVSAKE IFDNSTDSRV EKSVGERQMC ENSTTRP00000016339/1-1114 LPLVPRLSEV EKAWESSARP FKALLVSAKE IFDNSTDSRV EKSVGEKQMC 101 150 ENSP00000382030/1-1159 NLKCSNLKFQ MSSCLQSPPS QSPDSDLRAS GRS-EAGLHD REAFSVHRSN ENSBTAP00000047693/1-1084 NPEGQNSKFE MNSCLRSLPS QNFVSGVKTS RTSCEPGLYA REIFSVHCTD bmy_12526T0/1-1104 NLGCQNSRFE MKSCLRSLPS QSFDSGLKAS RTSCEPGLCD RESFSVHCSD BACU010270/1-1086 NLGCRNSRFE MKSCLWSLPS QSFDSGLKAS RTSCEPGLYD REPFGVHCSD ENSTTRP00000016339/1-1114 NLVCQNSGFE MKSCLRSLPS QSFDSGLKAS RTSCEPGLYD RESFGVHCSD 151 200 ENSP00000382030/1-1159 SSKAGVSQLL PSTSIHDIHG IRNENRKQQF VQGRDNVHK- -------ENP ENSBTAP00000047693/1-1084 RFEIETGQ-L SHASVHDVHV IKNEDG-QYL VQERDNSQED NNDIKLTENP bmy_12526T0/1-1104 RSGTEAGQ-L PSASIHDGQA IKNEDGKRSL LQGRDNSQED NTCTKQTENS BACU010270/1-1086 RSATEAGQ-L PNASIHDGQA IKNEDGKRYL LQGRDNSQED NNCTKQTENS ENSTTRP00000016339/1-1114 RSGTEAGQ-L PNASIHDGQA IKNDDGKRYL LQGRDNSQK- -------ENS 201 250 ENSP00000382030/1-1159 FLDVTFYKET KSPFHEIKNR CKANSVVPSN KRENNISSSV LKISKSQNQP ENSBTAP00000047693/1-1084 FLDITFYKDT KSTFHDIKNR CKAGSVMPSN KKENSVPAST LKIPKSQNQR bmy_12526T0/1-1104 FLDVTFYKET KSTFHDIKNR CKADSVMPSN KKENSISAST LKISKSQTQP BACU010270/1-1086 FLDVTFYKET KSTFHDIKNR CKADSVMPSN KKENSISAST LKISKSQTQP ENSTTRP00000016339/1-1114 FLDVTFYKET KSTFHDIKNR CKADSVTPSN KKENSISAST LKISKSQIQP 251 300 ENSP00000382030/1-1159 SLEIAKPSYF RDSGTISVPQ FPMDLNSKMS SVYLKEIAKK KNDKKEAYVR ENSBTAP00000047693/1-1084 GMEIAKPSYF RDKSTTSIPE FPTDLNSKMS SVYLKEIG-K KNDKNEAYVR bmy_12526T0/1-1104 SMEIAKPSYF RDCSTMSIPE FPTDLNSKMS SVYLKEIM-K KNDKNEAYVR BACU010270/1-1086 SMEIGKPSYF RDCSTISIPE FPTDLNSKMS SVYLKEIM-K KNDKNEACVR ENSTTRP00000016339/1-1114 SMEIAEPSYF RDSSTISIPE FPTDLNSKMS SVYLKEIM-K KNDKNEAYVR 301 350 ENSP00000382030/1-1159 DFTNIYWSQN RPDVKKQKLQ NDKKTVEAEN IFSKCYENDY PSLSSQNTC- ENSBTAP00000047693/1-1084 DFTNTHWSQN GPDVKKQKLQ NDKKIVDAEN IFSECYESNH QSVSNQSVCV bmy_12526T0/1-1104 DFTNIHWSQN RPDVKKQKLQ DDKKTVDAEN IFSECYGSNH QSLSNQSVCA BACU010270/1-1086 DFTNIHWSQN RSDVKKQKLQ DDKKTVDAEN IFSECYGSNH QSLSNQSVRA ENSTTRP00000016339/1-1114 DFTNIHWSQN RPDVKKQKLQ DDKKVVDAEN IFSECYGSNH QSLSNQSVCA 351 400 ENSP00000382030/1-1159 KRKDLISSNY CNCSSIQCNV RDSRKNFAI- LENANWEEAE -CLDSYVLTR ENSBTAP00000047693/1-1084 RKKDLISLHY YNHSSIKFDA IDSAKNFTIK LENANCKETE TCLYSYIFTR bmy_12526T0/1-1104 RKKDLISLHY YNHCSIKSDA IDSAKNFTIK LENANWEEAE TCLDSYXSTR BACU010270/1-1086 RKKDLISLHY YNHCSIKSDA MDSAKNLTIK LENANWEEAE TCLDSYISTR ENSTTRP00000016339/1-1114 RKKDLISLHY YNHCSIKSDA IDSAKNFTIK LENANWEEAE TCLDSYISTR 401 450 ENSP00000382030/1-1159 LEKSQNWDCN VRHILRRNRG NCWIINNCKT KCENMKKTEE KWNWLLLLEI ENSBTAP00000047693/1-1084 LEKLQSWDCN IIYILRKNRE NSWTMDSYKV KYENMKKAGE ILNLQQLLEI bmy_12526T0/1-1104 SEKLKSXDCN I--ILRKNRK NCWIMDSYKT KCENMKTTGE ILNLQQSLET BACU010270/1-1086 SEKLKSWDCN I--ILRKNRK NCWIMDSYKT KCENMKTTGE ILNLQPLLET ENSTTRP00000016339/1-1114 SEKSKNWDCN IRHILRKNRK NCWIMDSYKT KCENMK-TGE ILNLQQLLET 451 500 ENSP00000382030/1-1159 DLLSKEDYHC AKVINAYEEQ SKLLVREILG SQTALITTVW LNGKGENDNT ENSBTAP00000047693/1-1084 D-LSKGNYHN MKVMKTHDEK AKPLMTETLG SQKALKQIFC LKDKGEKDNM bmy_12526T0/1-1104 DLLSKENYHN TEVMKTHEGK SEPLMIETLG SQKALIKIFW LKGKGENDNM BACU010270/1-1086 DLLSKENYHN TEVMKTHEGK SEPLMIETLG SQKTLINIFW LKGKGENDNM ENSTTRP00000016339/1-1114 DLLSKENYHN TEVMKTHEEK SKPLMIETLG SQKASIKMFW FKGKGENDNM 501 550 ENSP00000382030/1-1159 LQLRYNTTQK VFHVNNPFES FIIEIFYFHK SISGNKKDNS ILTCCNILKC ENSBTAP00000047693/1-1084 LYFRHYTTQK DFHLSSYFES FITEIFYFHE SISGNQKDNN ILTWYGILKC bmy_12526T0/1-1104 LQLRCYTTQK DFHLSSXFEN FITGIFYFLK SISGNQKDNX ILTWYGILKC BACU010270/1-1086 LQLRCYTTQK DFHLSSIFEN FITGIFYFLK SISGNQKDNN ILTWYGILKC ENSTTRP00000016339/1-1114 LQLRCYTTQK DFHLSSIFEN FITGIFYFLK SISGNQKDNN ILTWYGILKC 551 600 ENSP00000382030/1-1159 KKQIGIIGIQ NLITRNMNTN IKNGILSIYL QDSVSEPLDI LLKTN-IAFL ENSBTAP00000047693/1-1084 KKQ---IDVQ NLITETMNVS INNDISSICL QTNVLDPLNI ILKTS-ITSL bmy_12526T0/1-1104 KNQ---IDVQ NLXTRNMNVN RNNDILSIYL QASVLDLLNI ILKTN-ITSL BACU010270/1-1086 KNQ---IDVQ NLITGNMNVN RNNDILSIYL QTSVLDLLNT ILRTNIITSL ENSTTRP00000016339/1-1114 KNQ---IDVQ NLITRNMNVN RNNDILSIYL QTGVLDLLNI ILKTN-ITSL 601 650 ENSP00000382030/1-1159 LNNFDSLTRI ENDFELEEEC IFKCMLYLKY PKNI-VENHT AYLVKILTSS ENSBTAP00000047693/1-1084 LNDFVSFTVV ENDSKLEEGC IFKWIMYLNY PKNITLESHT VCSVRILTFS bmy_12526T0/1-1104 LNNFDSLTII ENDSKLEEGC IFKWVIYLNY PKNVTV---- ---------- BACU010270/1-1086 LNNFDSLIII GNDSKLEERC IFKWVIYLNY PKNVTV---- ---------- ENSTTRP00000016339/1-1114 LNNSDSLTII ENYSKLEERC IFKWVIYLNY PKNITV---- ---------- 651 700 ENSP00000382030/1-1159 RLLEDNMKPM LKKRKLFRTE QVFEKSKKKL INSFSMTTQN TGFPIFETYE ENSBTAP00000047693/1-1084 RLLDNNMKPK LKKRKLFKSE QIFEEPKKKL TNSFSMTSKN IHFPIFETYE bmy_12526T0/1-1104 ---------- ---------- -------KKL ISSSSMTXKN IHFPIFETYE BACU010270/1-1086 ---------- ---------- -------KKR ISSSSMTIKN IHFPIFETYE ENSTTRP00000016339/1-1114 ---------- ---------- -------KKL ISSSSMTIKN IHFPIFETYE 701 750 ENSP00000382030/1-1159 KIPLLMDFDD MDEISLIREI TCQNMSCPQQ VVNVENWAHY NSSTVKAHGN ENSBTAP00000047693/1-1084 KIPLLMDFDD IDE------- ---------- ---------- ---------- bmy_12526T0/1-1104 KIPLLMDXXD IDENFLTKEI SYKNKSCPER XMSVGNWVHC SPKTVKTHVK BACU010270/1-1086 KIPLLMDFDD IDEIFLTKEI SYKNRSRPER LMSVGNWVHS SPKTVKTHVK ENSTTRP00000016339/1-1114 KIPLLMDFDD IDEIFLTK-I SYKNKSCPER LMSVGNWVHC SPKTVKTHVK 751 800 ENSP00000382030/1-1159 SCPQFIQNNR GYINENFYEV NMHSQDLNME RKQGHNKISN FDCEHIFEDL ENSBTAP00000047693/1-1084 ---------- ---------- ---------- ---EKQKQKS FNFNYIFKDF bmy_12526T0/1-1104 SCPQFIQIQK -YINKKTYEI NMQNQDLYSE GKQKHNKINR FNFKCIFEDF BACU010270/1-1086 SCPQFLQIQK -YINKKTYEI NMQNQDLYSE GKQKHNKINR FNFKCIFEDF ENSTTRP00000016339/1-1114 SCPQFIQIQK -YINKKTYEI NMQNQDLYSE GKQKHNKINR FNFKCIFEDF 801 850 ENSP00000382030/1-1159 CNVRQQAIPA SHNIIHNEET HTTSITQVLN FWNLLSEIEE KKYDLILKEE ENSBTAP00000047693/1-1084 FNTRQQAIQA SHDKKHSEQT NPMTVTQVLG FGNLINEIED KKYDLTLKEE bmy_12526T0/1-1104 FNIRQQAIQA SHNKKHNEQT NLTTITPVLT FGDLISEIEE KKYDLILKEE BACU010270/1-1086 FNIKQQALQA SHDKKHNEQT NLTTITPVLT FGDLISEIEE KKYDLILKEE ENSTTRP00000016339/1-1114 FNIRQQAIQA SHDKKHNEQT NLTTITPVLN FGDLISEIEE KKCDLILKEE 851 900 ENSP00000382030/1-1159 VKVTAESLTN SCQVHKDTKI EKEEKDSFFP MDDMFSVQSV SLISKEVNVE ENSBTAP00000047693/1-1084 GKITTQNLTN FCQGHEDIKT EKEEKNSFYS MDDMFIVQPV SLMTK-LDVE bmy_12526T0/1-1104 VKVTAQNLTN SCQVHEDIKI EKEKKKSFYS TEGIFFVQPV SLMSKKVGVE BACU010270/1-1086 VKVTAQSLTN SCQVHEDIKI EKEEKKSFYS TEGIFFVQPV SLMCKKVGVE ENSTTRP00000016339/1-1114 VKVTAQSLTN SCQVHEDIKI EKEEKKSFYS TEGIFFVQPV SLMNKKVGVE 901 950 ENSP00000382030/1-1159 ENKYVNQNYV TNTNEYESIL PEREIANSKD FHRKNDSALY INHQFETGLS ENSBTAP00000047693/1-1084 ETKYVNQSNV IDRNEYESTF QESELANSKH FHPKNDSSEC FNHQFETHLS bmy_12526T0/1-1104 ETKYVNRNTV ADRNKSENIF QESELANSKH FHPKNDSSEC FNLQFETHLS BACU010270/1-1086 ETKYVNRNNV ADRNESENIF QER------- ---------- ---------- ENSTTRP00000016339/1-1114 ETKYVNRNNV ADRNESENIF QESELANSKH FHPKNDSSEC FNLQFDTHLS 951 1000 ENSP00000382030/1-1159 EGNDECFQDL AAKYLSTEAL TIVKDFEMKR KFDLVLEELR MFHEISRENE ENSBTAP00000047693/1-1084 VGNNECFQDL TAKCLSTDVL TIANNFEMKS KFNLVLEELR MFHEISKENE bmy_12526T0/1-1104 XGNNECFQDL SAKCLSRDAL TIVNDFEMKS KFDLVLEELH MFHEISTENE BACU010270/1-1086 --NNECFQDL SAKCLSRDAL TIVNDFEMKS KFDLVLEELH MFHEISTENE ENSTTRP00000016339/1-1114 VGNNECFQDL S-KCLSRDAL TTVNDFEMKS KFDLVLEELH MFHEISMENE 1001 1050 ENSP00000382030/1-1159 LLSTVETNNG QENYFGE-ND AEKVKMEIEK DLKMVVVNKI RASSSFHDTI ENSBTAP00000047693/1-1084 ILSTVETNNR QENYFVESNA VEEVKMEIKK GLKMGTENKL CSSSLLGDMI bmy_12526T0/1-1104 ILSTVETNNG QENXFVENND VEEVKTEIKK GLKMGTGNKI CSSSLLCDTI BACU010270/1-1086 ILSTVETNNG QENYFVENND VEEVKTEIKK GLKMGTENKI CSSSLLCDTI ENSTTRP00000016339/1-1114 ILSTVETNNG QENYFVENND VVEVKTEIKK GLKMGTENKI CSSSLLCDTI 1051 1100 ENSP00000382030/1-1159 AGPNMGKSHQ SLFKWKTVPN NGEQEVPNES CYPSRSEEEL LYSTSEKD-- ENSBTAP00000047693/1-1084 ASPNMHKKHQ SLFKWKTVPK NGEQEVPND- CCLRTPEEEL LYSTSKED-- bmy_12526T0/1-1104 AGPNMRKKHQ NLFKWKKVPK NGEQEVPNEY CCLRTSEEEL LYSTSKEGQI BACU010270/1-1086 AGPNMRKKHQ NLFKWKKVPK NGEQEVPNEY CCLRTSEEEL LYSTSKEG-- ENSTTRP00000016339/1-1114 AGPNTHEKHQ SLFKWKKVPK NGEQEVPNE- -YLRTSEEEL LYSTSKED-- 1101 1150 ENSP00000382030/1-1159 -CETPLPKRP AFLPDECKEE -FNYLLRGGS HFPHGISRVR PLKTCSRPIR ENSBTAP00000047693/1-1084 -CENPSPERP TSFSDESKEE KFNYLLKAGS SFSYGISRVL PLKTCGRPIR bmy_12526T0/1-1104 YNFGKKEDKV ATFHMEFQEY ---YLLRHAV DQS------- ---------- BACU010270/1-1086 -CEKPSPERP AFFSDEFKEE KFNYLLKGGG NFSCGISRVL PLKTCSRPIR ENSTTRP00000016339/1-1114 -CEKPSPERP AFFSDEFKEE KFNYLLKGGG NFSYGISRLL PLKTCSRPIR 1151 1200 ENSP00000382030/1-1159 IGLSRKARIK QLHPYLKQMC YGNLKENF ENSBTAP00000047693/1-1084 VGLSRKAKLK QLHPYLK--- -------- bmy_12526T0/1-1104 -ELVCQEKLS -LNDFIPICN KYVTRT-- BACU010270/1-1086 IGLSRKAKLK RLHPYLQ--- -------- ENSTTRP00000016339/1-1114 IGLSRKAKLK QLHPYLQICD KNLEEGIG