KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:25 2014 Check: 00 .. Name: ENSP00000326671/1-602 Len: 697 Check: 1148 Weight: 1.00 Name: ENSBTAP00000047702/1-568 Len: 697 Check: 3058 Weight: 1.00 Name: ENSTTRP00000007283/1-571 Len: 697 Check: 8156 Weight: 1.00 Name: bmy_19850T0/1-575 Len: 697 Check: 1932 Weight: 1.00 Name: BACU005248/1-598 Len: 697 Check: 9891 Weight: 1.00 // 1 50 ENSP00000326671/1-602 MDSLQDTVAL DHGGCCPALS RLVPRGFGTE MWTLFALSGP LFLFQVLTFM ENSBTAP00000047702/1-568 MDSPQDTVPQ GRRSRCPALR RLVPVGFGAE ARTLFVLSGP LFLFQMLNFM ENSTTRP00000007283/1-571 MDGPQDMVPP GRGSRCPALR RLVPVGFGAE ARTLVVLSGP LFLFQMLNFM bmy_19850T0/1-575 MDGPQDMVPP GRGSRCPALR RLVPVGFGAE ARTLFVLSGP L----MLNFM BACU005248/1-598 MDGPRDVVPP GRGSRCPALR RLVPVGFGAE ARTLFVLSGP LFLFQMLNFM 51 100 ENSP00000326671/1-602 IYIVSTVFCG HLGKVELASV TLAVAFVNVC GVSVGVGLSS ACDTLMSQSF ENSBTAP00000047702/1-568 VYVVSTVFCG HLGTVELAAV TLSVAFVNVC GVSIGFGLSS ACDTLMSQSF ENSTTRP00000007283/1-571 TYVVSSVFCG HLGKVELAAV TLSVAFVNVC GVSIGFGLSS ACDTLMSQSF bmy_19850T0/1-575 TYVVSTVFCG HLGKVELAAV TLSVAFVNVC GVSIGFGLSS ACDTLMSQSF BACU005248/1-598 TYVVSTVFCG HLGKVELAAV TLSVAFVNVC GVSIGFGLSS ACDTLMSQSF 101 150 ENSP00000326671/1-602 GSPNKKHVGV ILQRGALVLL LCCLPCWALF LNTQHILLLF RQDPDVSRL- ENSBTAP00000047702/1-568 GSPNKKHVGI ILQRGVLVLL LCCLPCWALF LNTQLILLLC RQDPAVSRL- ENSTTRP00000007283/1-571 GSPNRKHVGV ILQRGALILL LCCFPCWALF LNTQHILLLC RQDPAVSRL- bmy_19850T0/1-575 GSPDRKHVGV ILQRGALVLL LCCLPCWALF LNTQPILLLC RQDPAVSRYP BACU005248/1-598 GSPNRKHVGV ILQRGALALL LCCLPCWALF LNTQHILLLC RQDPAVSRL- 151 200 ENSP00000326671/1-602 ---------T QDYVMIFIP- ---------- -GL------- ---------- ENSBTAP00000047702/1-568 ---------A QEYVQVYIP- ---------- -GL------- ---------- ENSTTRP00000007283/1-571 ---------A QEYVHVYIP- ---------- -AL------- ---------- bmy_19850T0/1-575 GRGGPWRSPP PGPALLWVPR RRERGPRGDV AGLVWSFSRA ACCSSRGQQG BACU005248/1-598 ---------A QEYVHAYIP- ---------- -AL------- ---------- 201 250 ENSP00000326671/1-602 ---------- ---------- ---PVIFLYN LLAKYLQNQG WLKGQEEESP ENSBTAP00000047702/1-568 ---------- ---------- ---PANFLYS LQAKYLQN-- ---------- ENSTTRP00000007283/1-571 ---------- ---------- ---PANFLYS LLAKYLQNQ- ---------- bmy_19850T0/1-575 ADQRPVLTEE EKTGFAWRLR LCPSANFLYS LLAKYLQN-- ---------- BACU005248/1-598 ---------- ---------- ---PANFLYS LLAKYLQN-- ---------- 251 300 ENSP00000326671/1-602 FQTPGLSILH PSHSHLSRAS FHLFQKITWP QVLSGVVGNC VNGVANYALV ENSBTAP00000047702/1-568 ---------- ---------- ----QGIVWP QVFSGIVGNC VNGLANYILV ENSTTRP00000007283/1-571 ---------- -------QSH PHLLQGIMWP QVLSGVVGNC VNGLANYILV bmy_19850T0/1-575 ---------- ---------- ----QGIMWP QVLSGVVGNC VNGLANYILV BACU005248/1-598 ---------- ---------- ----QGIVWP QVLSGVVGNC VNGLANYILV 301 350 ENSP00000326671/1-602 SVLNLGVRGS AYANIISQFA QTVFLLLYIV LKKLHLETWA GWSSQCLQDW ENSBTAP00000047702/1-568 SVLGQGVRGS AFANTVSQFS QAVFLLFYIV LKKLHLETWA GWSWECLQDW ENSTTRP00000007283/1-571 SVLGLGVRGS ACANTVSQFT QAVFLLLCVV KKKLHLDTWA GWSSQCLQGW bmy_19850T0/1-575 SVLGLGVRGS ACANTVSQFT QAVFLLLCIV KKKLHLDTWA GWSSQCLQGW BACU005248/1-598 SVLGLGVRGS ACANTVSQFT QAVFLLLCIV KKKLHLDTWA GWSSQCLQDW 351 400 ENSP00000326671/1-602 GPFFSLAVPS MLMICVEWWA YEIGSFLMGL LSVVDLSAQA VIYEVATVTY ENSBTAP00000047702/1-568 GPFFRLAIPS MLMLCIEWWA YEIGSFLVGL LSVLDLSAQA VIYEVATVIY ENSTTRP00000007283/1-571 GPFFRLAVPS MLMTCIEWWA YEIGSFLMGR LSVLDLSAQA IIYEVATVVY bmy_19850T0/1-575 GPFFRLAVPS MLMTCIEWWA YEIGSFLMGL LSVLDLSAQA IIYEVATVVY BACU005248/1-598 GPFFRLAVPS MLMTCIEWWA YEIGSFLMGL LSVLDLSAQA VIYEVATVVY 401 450 ENSP00000326671/1-602 MIPLGLSIGV CVRVGMALGA ADTVQAKRSA VSGVLSIVGI SLVLGTLISI ENSBTAP00000047702/1-568 MIPMGLSIAV CVRVGTALGA ADTVQAKRSA ISGTLCTVGT SLVVGILLSL ENSTTRP00000007283/1-571 MIPMGLSIAV CFRVGTALGA ADTVQAKRSA VS-TLCTVGT SLVVGTLLSL bmy_19850T0/1-575 MIPMGLSIAV CFRVGTALGA ADTVQAKRSA VSGTLCTVGT SLVVGTVLSL BACU005248/1-598 MIPMGLSIAV CFRVGTALGA ADTVQAKRSA VSGTLCMVGT SLAVGTVLSL 451 500 ENSP00000326671/1-602 LKNQLGHIFT NDEDVIALVS QVLPVYSVFH VFEAICCVYG GVLRGTGKQA ENSBTAP00000047702/1-568 LRNKLGHIFT NDEEVVALVN KVLPLYIFFQ LFDALCCLYA GVLRGTGRQA ENSTTRP00000007283/1-571 LRSKLGHIFT NDXXXXXXXX XXXXXXXXXX XFEAVCCLYG GVLRGTGRQA bmy_19850T0/1-575 LRNKLGHIFT TDEEVVALVS KVLPLYIVFH LFEAVCCLYG GVLRGTGRQA BACU005248/1-598 LRNKLGHIFT NDEEVVALVS KVLPLYIVFH LFEAVCCLYG GVLRGTGRQA 501 550 ENSP00000326671/1-602 FGAAVNAITY YIIGLPLGIL LTFVVRMRIM GLWLGMLACV FLATAAFVAY ENSBTAP00000047702/1-568 FGAVVNAVMY YAIGLPLGVV LTFLVGMGIM GLWLGMLVCV MLATAAFVTY ENSTTRP00000007283/1-571 FGAVVNAVTY YVIGLPLGVV LTFVVGLGIT GLWLGMLACV CLAAAAFVTY bmy_19850T0/1-575 FGAVVNAVAY YVVGLPLGAV LTFVVGLGIT GLWLGMLACV FLAAAAFVTS BACU005248/1-598 FGAVVNAVAY YVVGLPLGAV LTFVVGLGIT GLWLGMLACV FLAAAAFVTS 551 600 ENSP00000326671/1-602 TARLDWKLAA EEAK----KH SGRQ------ -----QQQRA ESTAT----- ENSBTAP00000047702/1-568 TARMDWKRAA EEAQ----KH AGLP------ ---------- PLGSTDSMAL ENSTTRP00000007283/1-571 TACMDWKRAA EEVQ----KR VGLP------ ---------R PLRAQ----- bmy_19850T0/1-575 TAWMDWKRAA EEVSAAPPKR QGAPCARTAG VIETVRRQRR PIQVP----- BACU005248/1-598 TAWMDWKRAA EEVSAAPPTR QGALWARTAG VMETVRRQRR PIQVQKRVGL 601 650 ENSP00000326671/1-602 ---------- --RPGPEKAV LSSVATGSSP GITLTTYSRS ECHVDFFRTP ENSBTAP00000047702/1-568 GP-------- --RPGPEKAV VSSVATGSSP GVILTTYLRP GGQPDLHRTP ENSTTRP00000007283/1-571 PP-------- --RPGHERAV VSSVAMGSHP GVTLTMYSRP EAHLDLFGTP bmy_19850T0/1-575 ---------- ---------- ---------- ---------Q ETTPDAQRKP BACU005248/1-598 PPQAAESAAP SLRPGPERAV VSSVATGSYP GVTLTMYSRP EAHLDLFGTP 651 700 ENSP00000326671/1-602 EEAHALSAPT SRLSVKQLVI RRGAALGAAS ATLMVGLTVR ILATRH- ENSBTAP00000047702/1-568 EAVHVLPTPA GRLSAKQLAL RRGAALGVAV GSLIVGLILR VLTARP- ENSTTRP00000007283/1-571 EAAQPLPAPP GRLSAKQLAI RRGAALGAAT GTLVVGLVIR VLTARP- bmy_19850T0/1-575 QQ------PD CR-------- ---------- ---------- ----RPN BACU005248/1-598 EAAQPLPAPP GRLSAKQLAI RRGAALGAAT GTLVVGLVIR VLTARP-