KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:26 2014 Check: 00 .. Name: ENSP00000370473/1-297 Len: 299 Check: 5261 Weight: 1.00 Name: ENSBTAP00000047769/1-291 Len: 299 Check: 8288 Weight: 1.00 Name: BACU012580/1-163 Len: 299 Check: 7733 Weight: 1.00 Name: ENSTTRP00000001890/1-236 Len: 299 Check: 5955 Weight: 1.00 Name: bmy_21273T0/1-163 Len: 299 Check: 7929 Weight: 1.00 // 1 50 ENSP00000370473/1-297 MQRARPTLWA AALTLLVLLR GPPVARAGAS SAGLGPVVRC EPCDARALAQ ENSBTAP00000047769/1-291 MLRARPALWA AALTALTLLR GPPAARAGAG TMGAGPVVRC EPCDARAVAQ BACU012580/1-163 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001890/1-236 ---------- ---------- ---------- ---------- ---------- bmy_21273T0/1-163 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000370473/1-297 CAPPPAV--C AELVREPGCG CCLTCALSEG QPCGIYTERC GSGLRCQPSP ENSBTAP00000047769/1-291 CAPPPPSPPC AELVREPGCG CCLTCALREG QPCGVYTERC GSGLRCQPPP BACU012580/1-163 ---------- ---------- ---------- LPCAF----- ---------- ENSTTRP00000001890/1-236 ---------- --LVREPGCG CCLTCALR-G QPCGVYTERC GSGLRCQPPP bmy_21273T0/1-163 ---------- ---------- ---------M SPRG------ ---------- 101 150 ENSP00000370473/1-297 DEARPLQALL DGRGLCVNAS AVSRLRAYLL PAPPAPGEPP APGNASESEE ENSBTAP00000047769/1-291 GDPRPLQALL DGRGLCANAS AVGRLRPYLL PSA------- -SGNGSESEE BACU012580/1-163 ---------- ---------- ---------- ---------- -QGNGSESEE ENSTTRP00000001890/1-236 GEPRPLQALL DGRGICANAS AAGRLRAYLL PATPAPGELP TPGNGSESEE bmy_21273T0/1-163 ---------- ---------- ---------- ---------- -SGNGSESEE 151 200 ENSP00000370473/1-297 DRSAGSVESP SVSSTHRVSD PKFHPLHSKI IIIKKGHAKD SQRYKVDYES ENSBTAP00000047769/1-291 DHSMGSTENQ AGPSTHRVPV SKFHPIHTKM DVIKKGHAKD SQRYKVDYES BACU012580/1-163 DHSMGSTENQ ALSGTHRVPD SKFHPVHTKM DVIKKGHAKD SQRYKVDYES ENSTTRP00000001890/1-236 GHSVGSTENQ ALTSTHRVPD SKFHPVHTKM DVIKKGHAKD SQRYKVDYES bmy_21273T0/1-163 DHSMGSTENQ ALTGTHRVPD SKFHPVHTKM DVIKKGHAKD SQRYKVDYES 201 250 ENSP00000370473/1-297 QSTDTQNFSS ESKRETEYGP CRREMEDTLN HLKFLNVLSP RGVHIPNCDK ENSBTAP00000047769/1-291 QSTDTQNFSS ESKRETEYGP CRREMEDTLN HLKFLNMLSP RGIHIPNCDK BACU012580/1-163 QSTDTQNFSS ESKRETEYGP CRREMEDTLN HLKFLNMLSP RGIHIPNCDK ENSTTRP00000001890/1-236 QSTDTQNFSS ESKRETEYGP CRREMEDTLN HLKFLNMLSP RGIHIPNCDK bmy_21273T0/1-163 QSTDTQNFSS ESKRETEYGP CRREMEDTLN HLKFLNMLSP RGIHIPNCDK 251 300 ENSP00000370473/1-297 KGFYKKKQCR PSKGRKRGFC WCVDKYGQPL PGYTTKGKED VHCYSMQSK ENSBTAP00000047769/1-291 KGFYKKKQCR PSKGRKRGFC WCVDKYGQPL PGFDVKGKGD VHCYSMESK BACU012580/1-163 KGFYKKKQCR PSKGRKRGFC WCVDKYGQPL PGFDVKGKGD VHCYSMESK ENSTTRP00000001890/1-236 KGFYKKKQCR PSKGRKRGFC WCVDKYGQPL PGFDVKGKGD VHCYSMESK bmy_21273T0/1-163 KGFYKKKQCR PSKGRKRGFC WCVDKYGQPL PGFDVKGKGD VHCYSMESK