KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:26 2014 Check: 00 .. Name: ENSP00000053867/1-593 Len: 608 Check: 9486 Weight: 1.00 Name: ENSBTAP00000047776/1-587 Len: 608 Check: 8368 Weight: 1.00 Name: ENSTTRP00000009978/1-588 Len: 608 Check: 4501 Weight: 1.00 Name: bmy_11391T0/1-601 Len: 608 Check: 1354 Weight: 1.00 Name: BACU008428/1-587 Len: 608 Check: 6834 Weight: 1.00 // 1 50 ENSP00000053867/1-593 MWTLVSWVAL TAGLVAGTRC PDGQFCPVAC CLDPGGASYS CCRPLLDKWP ENSBTAP00000047776/1-587 MWTLVSWVAL VTGLVVGKQC PDGQLCPVAC CLDPNGATYS CCNPVQDQRP ENSTTRP00000009978/1-588 MWTLVSWVAL VTGLVAGTQC PDGQLCPVAC CLDLRGATYS CCNPVPDKWP bmy_11391T0/1-601 MWTLVSWVAL VTGLVAGTQC PDGQLCPVAC CLDLRGATYS CCNPVPDKWP BACU008428/1-587 MWTLVSWVAL VTGLVAGTQC PDGQLCPVAC CLDLRGATYS CCNPVPDKWP 51 100 ENSP00000053867/1-593 TTLSRHLGGP CQVDAHCSAG HSCIFTVSGT SSCCPFPE-- ---------- ENSBTAP00000047776/1-587 SVLSQRLGRP CQADGHCAPG YSCILTVSGT SSCCPFPE-- ---------- ENSTTRP00000009978/1-588 TALSRHLGTP CRTDAHCSPG YSCILTVSGT SSCCPFPE-- ---------- bmy_11391T0/1-601 TALSRHLGTP CQTDAHCSPG YSCILTISGT SSCCPFPEGN GPSQRRRLCV BACU008428/1-587 TVLSRHLGTP CQTDAHCSPG YSCILTISGT SSCCPFPE-- ---------- 101 150 ENSP00000053867/1-593 --AVACGDGH HCCPRGFHCS ADGRSCFQRS GNNSVGAIQC PDSQFECPDF ENSBTAP00000047776/1-587 --AVSCGDGR HCCPRGFHCN ADGRSCFQRS DTKPLDAVQC PDKQFQCPNS ENSTTRP00000009978/1-588 --AVSCGDGH HCCPQGFHCS ADGRSCFQRS DTKPLGAVQC PDRQFECPNS bmy_11391T0/1-601 PQAVSCGDGH HCCPQGFHCS ADGRSCFQRS DTKPLGAVQC PDRQFECPNS BACU008428/1-587 --AVSCGDGH HCCPQGFHCS ADGRSCFQRS DTKPLGAVQC PDRQFECPNS 151 200 ENSP00000053867/1-593 STCCVMVDGS WGCCPMPQAS CCEDRVHCCP HGAFCDLVHT RCITPTGTHP ENSBTAP00000047776/1-587 STCCTMPDGS WGCCPMPQAS CCEDKIHCCP HGTSCDLARG RCLSATGTHP ENSTTRP00000009978/1-588 STCCSMPDGS WGCCPMPQAS CCEDKVHCCP HGTSCDLARG LCLTAAGTHP bmy_11391T0/1-601 STCCTMPDGS WGCCPMPQAS CCEDKVHCCP RGTSCDLAHG LCLTATGTHP BACU008428/1-587 STCCTMPDGS WGCCPMPQAS CCEDKVHCCP RGTSCDLAHG LCLTATGTHP 201 250 ENSP00000053867/1-593 LAKKLPAQRT NRAVALSSSV MCPDARSRCP DGSTCCELPS GKYGCCPMPN ENSBTAP00000047776/1-587 LAKKMPAHKT KSSVIL---- -CPDGQSQCP DGSTCCKLPT GKYGCCPMPN ENSTTRP00000009978/1-588 LAKKIPAQKT KRPVVL---- -CPDAQSQCP DGSTCCKLPS GKYGCCPMPS bmy_11391T0/1-601 LAKKIPAQKT KRPVVL---- -CPDAQSQCP DGSTCCKLPS GKYGCCPMPS BACU008428/1-587 LAKKIPAQKT KRPVVL---- -CPDAQSQCP DGSTCCKLPS GKYGCCPMPS 251 300 ENSP00000053867/1-593 ATCCSDHLHC CPQDTVCDLI QSKCLSKENA TTDLLTKLPA HTVGDVKCDM ENSBTAP00000047776/1-587 AICCSDHLHC CPQNTVCDLT QSKCLSKENA -TDLLTKLPA HTVQDVKCDM ENSTTRP00000009978/1-588 AVCCSDHLHC CPQDTVCDLI QSKCLSKENA -TDLLIKLPA HTVQEVKCDM bmy_11391T0/1-601 AICCSDHLHC CPQDTVCDLI QSKCLSKENA -TDLLTKLPA HTVQEVKCDM BACU008428/1-587 AICCSDHLHC CPQDTVCDLI QSKCLSKENA -TDLLTKLPA HTVQEVKCDM 301 350 ENSP00000053867/1-593 EVSCPDGYTC CRLQSGAWGC CPFTQAVCCE DHIHCCPAGF TCDTQKGTCE ENSBTAP00000047776/1-587 EVSCPDDYTC CRLQSGAWGC CPFVQAVCCE DHVHCCPSGF RCDTEKGVCE ENSTTRP00000009978/1-588 EVSCPDDYTC CRLLSGAWGC CPFAQAVCCE DHVHCCPAGF RCDTEKGTCE bmy_11391T0/1-601 EVSCPDDYTC CRLLSGAWGC CPFAQAVCCE DHVHCCPAGF RCDTEKGTCE BACU008428/1-587 EVSCPDDYTC CRLLSGAWGC CPFAQAVCCE DHVHCCPAGF RCDTEKGTCE 351 400 ENSP00000053867/1-593 QGPHQVPWME KAPAHLSLPD PQALKRDVPC DNVSSCPSSD TCCQLTSGEW ENSBTAP00000047776/1-587 QGTRQVPWMK KAPAHLSLLD LGAVEGDVPC DNVTSCPSST TCCRLKSGEW ENSTTRP00000009978/1-588 QGARRVPWMR KAPAHVSLLD SRAVENDVPC DIVTSCPSSN TCCRLTSGEW bmy_11391T0/1-601 QGARWVPWMR KAPAHVSLPD PRAVENDVPC DNVTNCSSSN TCCRLTSGEW BACU008428/1-587 QGARRVPWMR KAPAHVSLPD PRAVENDIPC DNVTSCPSSN TCCRLTSGEW 401 450 ENSP00000053867/1-593 GCCPIPEAVC CSDHQHCCPQ GYTCVAEGQC QRGSEIVAGL EKMPARRASL ENSBTAP00000047776/1-587 ACCPAPEAVC CSDHQHCCPK GYTCVARRHC KRGKQVVTGL DKVPAHRASP ENSTTRP00000009978/1-588 GCCPAPEAVC CSDHQHCCPQ GYTCLAGGHC KRGNKVVTGL AKLPARRASL bmy_11391T0/1-601 GCCPIPEAVC CSDHQHCCPQ GYTCVAGGXC KRGNEVVTGL DKVPARQASL BACU008428/1-587 GCCPIPEAVC CSDHQHCCPQ GYTCVAGGHC RRGNEVVTGL DKVPARQASL 451 500 ENSP00000053867/1-593 SHPRDIGCDQ HTSCPVGQTC CPSLGGSWAC CQLPHAVCCE DRQHCCPAGY ENSBTAP00000047776/1-587 SHPRDMGCDQ HTSCPVGQTC CPSLRGAWAC CKLPHAVCCE DRQHCCPAGY ENSTTRP00000009978/1-588 SHSRDMGCDQ HTSCPVGQTC CPSLSGGWAC CQLPHAVCCE DRQHCCPAGY bmy_11391T0/1-601 SHSRDMGCDQ HTSCPVGQTC CPSLSRGWAC CQLPHAVCCE DRQHCCPAGY BACU008428/1-587 SHSRDMGCDQ HTSCPVGQTC CPSLSRGWAC CQLPHAVCCE DRQHCCPAGY 501 550 ENSP00000053867/1-593 TCNVKARSCE KEVVSAQPAT FLARSPHVGV KDVECGEGHF CHDNQTCCRD ENSBTAP00000047776/1-587 TCNVKARSCE KEVDPVHPAV RLASGPPVGM GNVECGARHF CHDNQTCCPD ENSTTRP00000009978/1-588 TCNVKARSCE KEVDSARPAA HLDHGRHVGV GNVDCGEGHF CHDNQTCCRD bmy_11391T0/1-601 TCNVKARSCE KEADSARPAA HLDRGRHVGV GNVDCGEGHF CHDNQTCCRD BACU008428/1-587 TCNVKARSCE KEADSARPAA HLDRGRHVGV GNVDCGEGHF CHDNQTCCRD 551 600 ENSP00000053867/1-593 NRQGWACCPY RQGVCCADRR HCCPAGFRCA ARGTKCLRRE APRWDAPLRD ENSBTAP00000047776/1-587 SQGGWACCPY RKGTCCGDKH HCCPSGFRCA ARGTKCLRRE ALRWDAPWRD ENSTTRP00000009978/1-588 SRGGWACCPY RQGTCCADRR HCCPSGFRCG AKGTKCLLRE ALRWDAPQRN bmy_11391T0/1-601 SRGGWACCPY RQGTCCADRR HCCPSGFRCG TKGTKCLLRE ALRWDAPQRD BACU008428/1-587 SRGGWACCPY RQGTCCADRR HCCPSGFRCG TKGTKCLLRE ALRWDAPQRD 601 650 ENSP00000053867/1-593 PALRQLL- ENSBTAP00000047776/1-587 PTPRQLL- ENSTTRP00000009978/1-588 PAPRQLLG bmy_11391T0/1-601 PAPRQLL- BACU008428/1-587 PAPRQLL-