KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:27 2014 Check: 00 .. Name: ENSP00000418875/1-385 Len: 471 Check: 5710 Weight: 1.00 Name: ENSBTAP00000047813/1-432 Len: 471 Check: 4719 Weight: 1.00 Name: bmy_05628T0/1-420 Len: 471 Check: 4268 Weight: 1.00 Name: BACU002445/1-339 Len: 471 Check: 6344 Weight: 1.00 Name: ENSTTRP00000016399/1-358 Len: 471 Check: 1280 Weight: 1.00 // 1 50 ENSP00000418875/1-385 MGR--WCQTV ARG------- ---------- ---------Q RPRTSAPS-- ENSBTAP00000047813/1-432 MEF--WCELP AGRRGP---- ---------- ---------P RPGTSTLALA bmy_05628T0/1-420 MGVLSWSFSC SRRRFPGIYT STSYFTDWIK KQISDMRFVS RARPDFLSLV BACU002445/1-339 MEF--WCGAP AGRHSP---- ---------- ---------P RPRTSALA-- ENSTTRP00000016399/1-358 ---------- ---------- ---------- ---------- -PRTSVLS-- 51 100 ENSP00000418875/1-385 -RAGALLLLL L--------- ---------- ----LLRSAG CWGA------ ENSBTAP00000047813/1-432 LASAGLLLLL LRPLGRPAPA HPPTPSDLAS TSDSLPPSTG CLGA------ bmy_05628T0/1-420 FLTGYILLVS LGSL------ ---------- ----WLLPTG RHGVPGGQRR BACU002445/1-339 -HAGLLLMLL LLLL------ ---------- ----LLQPSG CLGA------ ENSTTRP00000016399/1-358 -HAGLLLMLL L--------- ---------- ----LLRPAG CLGA------ 101 150 ENSP00000418875/1-385 GEAPGALSTA DPADQ--SVQ CVPKATCPSS RPRLLWQTPT TQ-------- ENSBTAP00000047813/1-432 GDTLGALSTD VPADL--DAP CAPSATCPSG RRRF----PR QNLSVMGSLT bmy_05628T0/1-420 GQKPGSPEHQ QARHRAAGTP GAPSRGTTGG RRADGAGNAR AH-------- BACU002445/1-339 GEVPGALSTD APADL--GAP CAPSATCPSG GRRF----PR QA-------- ENSTTRP00000016399/1-358 GKVPGALSTD APADL--DAP CAPSATCPSG GRRF----PR QA-------- 151 200 ENSP00000418875/1-385 ---------T LPSTTMETQF PVSEGKVDPY RS-------C GFSYEQDPTL ENSBTAP00000047813/1-432 LRTPQHSAVH AAVPSLVLAF TAAGDGLLTL ISQSTSPFAC GFSYERDPTL bmy_05628T0/1-420 ---------H TAEAAAGCQW GAPSWGEPRE RP-------C GFSYEWDPTL BACU002445/1-339 ---------A TSQPPRTLQY SASKADEDEF LP------PC GFSYERDPTL ENSTTRP00000016399/1-358 ---------A TSQPPRTLQY SASKADEDEF LS------PC GFSYERDTTL 201 250 ENSP00000418875/1-385 RDPEAVARRW PWMVSVRANG THICAGTIIA SQWVLTVAHC LIWRDVIYSV ENSBTAP00000047813/1-432 RDPESMARRW PWMVSVRANG THICAGTLIA SEWVLTAAHC TTESDVTYSV bmy_05628T0/1-420 RDPEAMARWW PWMVSVRTNG THICAGTLIA SEWVLTVAHC MIQSDVTYSV BACU002445/1-339 RDPEAMARWW PWMVSVRANG THICAGTLIA SEWVLTVAHC MIQSDVTYSV ENSTTRP00000016399/1-358 RDPEAMARR- PWMVSVRANG T--CAGTLIA SEWVLTVAHC MIQSDVTYSV 251 300 ENSP00000418875/1-385 RVGSPWIDQM TQTASDVPVL QVIMHSRYRA QRFWSWVGQA NDIGLLKLKQ ENSBTAP00000047813/1-432 RAGSPWIDRI TKTSIDILAK EVIVHSRYRA SRYWSWVGRA NDIALLNLDR bmy_05628T0/1-420 QVGSPWVDQI SKSTVDVLAQ QVIVNSHYXS HRYWSWVGRA NDIALLKLER BACU002445/1-339 RVGSPWVDQI SNSTVDILAQ QVIVNSHYRS HRYWSWVGRA NDIALLKLER ENSTTRP00000016399/1-358 WVGSPWVDQI SKSTVDVLAQ HVIVNSHYRS HRYWSRVGRA NDMALLKLER 301 350 ENSP00000418875/1-385 ELKYSNYVRP ICLPGTDYVL KDHSRCTVTG WGLSKADGMW PQFRTIQEKE ENSBTAP00000047813/1-432 PMQYSKYVWP ICLPGLDYSV KDYSLCTVTG WGLPRVDGQW PQFRTIQEKE bmy_05628T0/1-420 PLKYNKYVWP ICLPGLDYTL KDHALCTVTG WGLPRVDDVW PQFRTIQEKE BACU002445/1-339 PLKYN----- ---------- ---------- ---------- ---KTIQEKE ENSTTRP00000016399/1-358 PLNYNKYVWP ICLPGLDSAL KDHALCTVTG WGLPRVDGVW PQFRTIQDKE 351 400 ENSP00000418875/1-385 VIILNNKECD NFYHNFTKIP TLVQIIKSQM MCAEDTHREK FCYELTGEPL ENSBTAP00000047813/1-432 VTILNSTECD SLYRRFSKIP SLIQIINSQM ICAKDVDREK FCYEISGEPL bmy_05628T0/1-420 VTILNSTECE SVYHRFSKIP SLIQIINSQM IYAKDINRNS FAI---GEPL BACU002445/1-339 VTILNSTECE SVYHRFSKIP SLIQIINSQM ICAKDI---- ---EISGEPL ENSTTRP00000016399/1-358 VTILNSTECE SLYHRFSKI- -LIQIINSQM ISAKDVN-EQ FCYEISGEPL 401 450 ENSP00000418875/1-385 VCSMEGTWYL VGLVSWGAGC QKSEAPPIYL QVSSYQHWIW DCLNGQALAL ENSBTAP00000047813/1-432 ACPVQNIWHL VGVVSWGPGC KKSEAPPIYI HISSYQQWIW DRISGQ--TL bmy_05628T0/1-420 TCPVESIWYL VGMVSWGPGC KKSKALPIYL HISSYQQ--W KRLNGQ--TL BACU002445/1-339 ACPVESIWYL VGMVSWGPGC KKSKALPIYL YISSYQQ--W EHLNGQ--TL ENSTTRP00000016399/1-358 ACPVESIWYL VGMVSWGPGC KKSKALPIYL HIS-FCQ--W ERLNGQ--TL 451 500 ENSP00000418875/1-385 PAPSRTLLLA LPLPLSLLAA L ENSBTAP00000047813/1-432 PAPSRALLLA LLMLLSFLAA L bmy_05628T0/1-420 PAPSRALLLA LLLPLNLLAV L BACU002445/1-339 PAPSRALLLA LLLPLNLLAV L ENSTTRP00000016399/1-358 PAPSRALLLA LLLPLNLLAV L