KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:31 2014 Check: 00 .. Name: ENSP00000398688/1-1242 Len: 1261 Check: 3040 Weight: 1.00 Name: ENSBTAP00000047929/1-1255 Len: 1261 Check: 8901 Weight: 1.00 Name: ENSTTRP00000010662/1-1007 Len: 1261 Check: 8414 Weight: 1.00 Name: bmy_10425T0/1-999 Len: 1261 Check: 7380 Weight: 1.00 Name: BACU016574/1-1203 Len: 1261 Check: 4805 Weight: 1.00 // 1 50 ENSP00000398688/1-1242 MPGLYCPSSW TPLPLTDSWV RACANGPCLS VRARLTYRNP QPQPVDGVFV ENSBTAP00000047929/1-1255 MPGLYCPSSW TPLPLTDSWV RACANGPCLS LRARLTYHNP QPQPVDGVFV ENSTTRP00000010662/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_10425T0/1-999 MPGLYCPSSW TPLPLTDSWV RACANGPCLS LRARLTYHNP QPQPVDGVFV BACU016574/1-1203 MPGLYCPSSW TPLPLTDSWV RACANGPCLS LRARLTYHNP QPQPVD---- 51 100 ENSP00000398688/1-1242 YPLAEAEVVS GFEAEAAGRR VSFQLQSRRR SQAACCRALG PGLGTPTPRR ENSBTAP00000047929/1-1255 YPLAEAEVVS GFEAEAAGRR VSFQLQSRRR SQAACCSALG PALGASTPRR ENSTTRP00000010662/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_10425T0/1-999 YPLAEAEVVS GFEAEAAGRR VSFQLQNRRR SQAACCRAVG PALGASTPRR BACU016574/1-1203 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000398688/1-1242 CAQGHLVLDL AQARSTLVLP TGIIAAAGTM TVTLHSSREL PSRPDGVLHV ENSBTAP00000047929/1-1255 CAQGHLVLDL AQARSTLVLP TGLIAAAGTM TVTLRSSREL PSRPDGVLHV ENSTTRP00000010662/1-1007 ---------- -EAR------ ---------- ---------- ---------- bmy_10425T0/1-999 CAQGHLVLDL AQARSTLVLP TGLIAAAGTM TVTLRSSREL PSRPDGVLRV BACU016574/1-1203 ---GHLVLDL AQARSTLVLP TGLIAAAGTM TVTLRSSREL PSRPDGVLRV 151 200 ENSP00000398688/1-1242 ALPTVLTPLA PPGPPGPPRP PGLCDDSPTS CFGVGSLQEE GLAWEELAAP ENSBTAP00000047929/1-1255 ALPSVLTPLA PPGPPGPPRP PGLCDDSPTS CFGVSSPQGE GPAWEESAAP ENSTTRP00000010662/1-1007 ---------- ---PASSPRT VGL------S SWGLET---- GTSLTEL--- bmy_10425T0/1-999 ALPSVLTPLA PPGPLGPPRP PGLCDDSPTS CFGMGSPEGD GPAWEEPAAP BACU016574/1-1203 ALPSVLTPLA PPGPLGPPRP PGLCDDSPTS CFGMGSPEGD GPAWEEPAAP 201 250 ENSP00000398688/1-1242 RDVFSGPARC PAPYTFSFEM LVTGPCLLAG LESPSHALRA DAPPHASSAA ENSBTAP00000047929/1-1255 RDVFLGPARC PAPYTFSFEM LVTGPCLLAG LESPSHALRA DAPPHASSAA ENSTTRP00000010662/1-1007 ---------C P--------- ------LLP- ---------- ---------- bmy_10425T0/1-999 RDVFSGPARC PAPYTFSFEM LVTGPCLLA- ---------- ---------- BACU016574/1-1203 RDVFSGPARC PAPYTFSFEM LVTGPCLLAG LESPSHALRA DAPPHASSAA 251 300 ENSP00000398688/1-1242 TICVTLAEGH HCDRALEILL HPSEPHQPHL MLEGGSLSSA EYEARVRARR ENSBTAP00000047929/1-1255 TICVTLAEGH RCDRALEILL HPSEPHQPHL MLEAGSLSSA EYEARVRARR ENSTTRP00000010662/1-1007 ---------- ---------- ---EPHQPHL MLEAGSLSSA EYEAQVRARR bmy_10425T0/1-999 ---------- ---------- ---EPHQPHL MLEAGSLSSA EYEAQVRARR BACU016574/1-1203 TICVTLAEGH HCDRALEILL HPSEPHQPHL MLEAGSLSSA EYEAQVRARR 301 350 ENSP00000398688/1-1242 DFQRLQRRDS DGDRQVWFLQ RRFHKDILLN PVLALSFCPD LSSKPGHLGT ENSBTAP00000047929/1-1255 DFQRLLRRDS DGDRQVCFLQ RRFHKDILLN PVLVLSFCPD LSSKPGHLGT ENSTTRP00000010662/1-1007 DFQRLQRRDS EGDRQVWFLQ RRFHKDILLN PVLVLSFCPD LSSKPGHLGT bmy_10425T0/1-999 DFQRLQRRDS EGDRQVWFLQ RRFHKDILLN PVLVLSFCPD LSSKPGHLGT BACU016574/1-1203 DFQRLQRRDS EGDRQVWFLQ RRFHKDILLT PVLVLSFCPD LSSKPGHLGT 351 400 ENSP00000398688/1-1242 ATRELLFLLD SSSVAHK--- --DAIVLAVK SLPPQTLINL AVFGTLVQPL ENSBTAP00000047929/1-1255 ATRELLFLLD GSSVAHK--- --DAIVLAVK SLPPQTLINL AMFGISVQPL ENSTTRP00000010662/1-1007 ATRELLFLLD GSSMAHK--- --DAIVLAVK SLPPQTLINL AMFGTLVQPL bmy_10425T0/1-999 ATRELLFLLD GSSMAHKACG STDAIVLAVK SLPPQTLINL ATFGTLVQPL BACU016574/1-1203 ATRELLFLLD GSSMAHKACG STDAIVLAVK SLPPQTLINL ATFGTLVQPL 401 450 ENSP00000398688/1-1242 FPESRPCSDD AVQLICESIE TLQVPSGPPD VLAALDWAVG QPQHRAYPRQ ENSBTAP00000047929/1-1255 FPESRPCSDE AVQLICESVE MLQAVDGTPD VWAALDWALG QPQQRAHPRQ ENSTTRP00000010662/1-1007 FPESRPCNDE AVKLICESVE MLQAAGGPPD VRSALAWALG QPQHRAHPRQ bmy_10425T0/1-999 FPESRPCSDE AVQLICESIE MLQAAGGPPD VKSALDWALG QPQHRAHPRQ BACU016574/1-1203 FPESRPCSDE AVQLICESME MLQAAGGPPD VRSALDWALG QPQHRAHPRQ 451 500 ENSP00000398688/1-1242 LFLLTAASPM AATTHRTLEL MRWHRGTA-R CFSFGLGPTC HQLLQGLSAL ENSBTAP00000047929/1-1255 LFLLTAASPM AAVTHQTLEL MRWHRGAA-R CFSFGLGRAC RQLLQGLSAV ENSTTRP00000010662/1-1007 LFLLTAASPM AAATHHTLEL MRWHRGAASR CFSFGLGPAC RQLLQGLSAL bmy_10425T0/1-999 LFLLTAASPM AAATHQTLEL MRWHRAAA-R CFSFGLGPAC RQLLQGLSAL BACU016574/1-1203 LFLLTAASPM AAETHQTLEL MRWHRAAA-R CFSFGLGPAC RQLLQDLSAL 501 550 ENSP00000398688/1-1242 SRGQAYFLRP GQRLQPMLVQ ALRKALEPAL SDISVDWFVP DTVEALLTPR ENSBTAP00000047929/1-1255 SRGQAYFLRP GERLQPMLVQ ALRKALEPAL SDISVDWFVP DAVEALLTPR ENSTTRP00000010662/1-1007 SRGQAYFLRP GERLQPMLVQ TLRKALE-AL SDISVDWFVP DAVEALLTPR bmy_10425T0/1-999 SRGQAYFLRP GERLQPMLVQ ALRKALEPAL SDISVDWFVP DAVEALLTPR BACU016574/1-1203 SRGQAYFLRP GERLQPMLMQ ALRKALEPAL SDISVDWFVP DAVEALLTPR 551 600 ENSP00000398688/1-1242 EIPALYPGDQ LLGYCSLFRV DGFRSRPPGG QEPGWQSSGG SVFPSPEEAP ENSBTAP00000047929/1-1255 EIPALYPGDQ LLGYCSLFRV DSFRSQPPGG QEPGWQSLGG SVFPSPEEAP ENSTTRP00000010662/1-1007 EIPALYPGDQ LLGYCSLFRV DGFRSRPLGG QEPGWQSLGS SVFPSPEEAP bmy_10425T0/1-999 EIPALYPGDQ LLGYCSLFRV DGFRSRPQG- ---------- ---------- BACU016574/1-1203 EIPALYPGDQ LLGYCSLFRV DGFRSRPQGG QEPGWQSLGS SVFPSPEEAP 601 650 ENSP00000398688/1-1242 SAASPGTEPT GTSEPLGTGT VSAELSSPWA ARDSEQSTDA LTDPVTDPGP ENSBTAP00000047929/1-1255 SATSPGTEPT GTSEPLGTGT VSAELSSPWV AGDSERSTDA LTDPVTDPGP ENSTTRP00000010662/1-1007 SATSPGTEPT GTSEPLGTGT VSAELSSPWA AGDSDRSTDA LTDPVTDPGP bmy_10425T0/1-999 ---------- ---------- ---------- ---------- ---------- BACU016574/1-1203 SATSPGTEPT GTSEPLGTGT VSAELSSPWA AGDSDRSADA LTDPVTDPGP 651 700 ENSP00000398688/1-1242 NP-SDTAIWR RIFQSSYIRE QYVLTHCSAS PEPGPGSTGS SESPGSQGPG ENSBTAP00000047929/1-1255 NPSSDTAIWH RIFQSSYIRE QYVLTHCSAS PEPGPGSTGS SASPVSQGPG ENSTTRP00000010662/1-1007 NPSSDTAIWR RIFQSSYIRE QYVLTHCSAS PEPGPGSTGS SESPVSQGPG bmy_10425T0/1-999 ---------- ---------- ---------- ---------- ---------- BACU016574/1-1203 NPSSDAAIWR RIFQSSYIRE QYVLTHCSAS PEPGPGSTGS SESPASQGPG 701 750 ENSP00000398688/1-1242 SPEGSAPLEP PSQQGCRSLA WGEPAGSRSC PLPAPTPAPF KVGALSTEVL ENSBTAP00000047929/1-1255 SPEGNTPLDP PSQQGCRSLA WGESASSRSC PLPPSPLAPV KTGALSAEVL ENSTTRP00000010662/1-1007 SPEGSAPLDP PSQQGCRSLA WGESAGSHSC PLPPPPLAPV KTGALSAEVL bmy_10425T0/1-999 ---------- ---------- ---------- ---------- -TGALSAEVL BACU016574/1-1203 SPEGSAPLDP PSQQGCRSLA WGESAGSHSC PLPPPPPAPV KTGALSAEVL 751 800 ENSP00000398688/1-1242 GRQHRAALAG RSLSSPPGRA NQVPGRPRKP SLGAILDGPS PEPGQQLGQG ENSBTAP00000047929/1-1255 GRRRRVALAG RSLSSPQGRV NPVPGCPRHP SLGVAPDGPG PEPGQQLGRG ENSTTRP00000010662/1-1007 GRRHRAALTG RSLSSPPGRV NSVPGHLRHP SLGVAPDGPG PEPGQLLGQG bmy_10425T0/1-999 GRRRRAALTG RSLSSPPGRV NSVPGHLRHP SLGVAPDGPG PEPGQLLGQG BACU016574/1-1203 GRRRRAALTG RSLSSPPGQV NSVPGHLRHP SLGVAPDGPG PEPGQLLGQG 801 850 ENSP00000398688/1-1242 LDDSGNLLSP APMDWDMLME PPFLFTAVPP SGELAPPAV- -PPQAPRCHV ENSBTAP00000047929/1-1255 LDDSGNLLSP APMDWDMLME PPFLFTAVPL SGELAPPAVA QPPQAPRCHV ENSTTRP00000010662/1-1007 LDDSGNLLSP APMDWDMLME PPFLFTAVPP SGELAPPAIP LPPQPPRCHV bmy_10425T0/1-999 LDDSGSLLSP APMDWDMLME PPFLFTAVPP SGELAPPAIP LPPQPPRCHV BACU016574/1-1203 LDDSGSLLSP APMDWDMLME PPFLFTAVPP SGELAPPAML LPPQPPRCHV 851 900 ENSP00000398688/1-1242 VIRGLCGEQP MCWEVGVGLE TLWGPGD-GS QPPSPPVREA AWDQALHRLT ENSBTAP00000047929/1-1255 VIRALCGEQP MCWEVGVGLE TLWGPQDDGS LPPSPPERDN AWDQALHRLT ENSTTRP00000010662/1-1007 VIRALCGEQP MSWEVGVGLE MLWGPRDAGS LPPSPPESGN AWDQALHRLT bmy_10425T0/1-999 VIRALCGEQP MSWEVGVGLE MLWGPRDAGS LPPSPPEREN AWDQALHRLT BACU016574/1-1203 VIRALCGEQP MSWEVGVGLE MLWGPRDAGS LPPSPPERGS AWDQALHRLT 901 950 ENSP00000398688/1-1242 AASVVRDNEQ LALRGGAETT ADRGHARRCW LRALQTSKVS SAPSCFTCPV ENSBTAP00000047929/1-1255 AASVVRDNEQ LALRRGGETR ADRGHARRSW LRALQTSKVS SAPSCFTCPV ENSTTRP00000010662/1-1007 AASVVRDNEQ LALRGRGETR ADRGHARRPW LRALQTSKVS SAPSCFTCPV bmy_10425T0/1-999 AASVVRDNEQ LALRGRGETR ADRGHARRSW LRALQTSKVS SAPSCFTCPV BACU016574/1-1203 AASVVRDNEQ LALRGRGETR ADRGHARRSW LRALQTSKVS SAPSCFTCPV 951 1000 ENSP00000398688/1-1242 AVDATTREVL PGALQVCSSE PAEPPGTPPA SHSHLDAAPL PTVVYSKGLQ ENSBTAP00000047929/1-1255 AVDATTREVL PSALQVQSSE PAEPAGTPPI SQSHVDAAPF PTVVHSKGLK ENSTTRP00000010662/1-1007 AVDATTREVL PSALQVHSSE LAEPPGTPPA SQGHLDAAPL PTAVHSKGLK bmy_10425T0/1-999 AVDATTREVL PSALQVQSS- ---------- ---------- ---------- BACU016574/1-1203 AVDATTREVL PSALQVQSSE PAEPPGTPPA SQGHLDAAPL PTVVHSKGLK 1001 1050 ENSP00000398688/1-1242 RGSPAGAWDS DQNGNSKRAL GDPATPTEGP RRPPPRPPCR LSMGRR---- ENSBTAP00000047929/1-1255 EDSLAGGWDP DQTGNSSSAL GDHAAPIGGS HRPLPRPPSR ISLGRWKSRG ENSTTRP00000010662/1-1007 GGSLAGGWEP DQIGNSSSAL GDRAAPIGGP HRLPPEPPSR LSLGRR---- bmy_10425T0/1-999 ---------- ---------- ----APIRGP HRLPPEPPSR LSLGHRKARG BACU016574/1-1203 GGSLAGGWEP DQIGNSSSAL GDHAASIGGP HRLPPEPPSR LSLGRRKARG 1051 1100 ENSP00000398688/1-1242 ---HKLCSPD PGQAN--NSE GSDHDYLPLV RLQEAPGSFR LDAPFCAAVR ENSBTAP00000047929/1-1255 PDSHRPCSPN TGQVNDSNSE GSGHDYLPLV RLQEAPGSFR LDALFCAAVR ENSTTRP00000010662/1-1007 ---HRLCSPN TGQASDSNSE GSNHDYLPLV RLQEAPGSFR LDAPFCTAVR bmy_10425T0/1-999 PDSHRLCSPN TGHASDSNSE GSNHDYLPLV RLQEAPGSFR LDAPFCAAVH BACU016574/1-1203 PDSHRLCSPN TGQASDSNSE GSNHDYLPLV RLQEAPGSFR LDAPFCAAVH 1101 1150 ENSP00000398688/1-1242 ISQERLCRAS PFAVHRASLS PTSASLPWAL LGPGVGQGDS ATASCSPSPS ENSBTAP00000047929/1-1255 ISQERLCRAS PFAAHRASLS PTSASSPWAL LAPSVGQGSS ATASCSPSPS ENSTTRP00000010662/1-1007 ISRERLCRAS PFAAHRTSLS PTSASSPWAL LGHGAGQGDS ATASCSPSPS bmy_10425T0/1-999 ISRERLCRAS PFAAHRASLS PTSASSPWAL LGHGAGKGDS ATASCSPSPS BACU016574/1-1203 ISRERLCRAS PFAAHRASLS PTSASSPWAL LGHGAGQGDS ATASCSPSPS 1151 1200 ENSP00000398688/1-1242 SGSEGPGQVD SGRGSDTEAS EGAEGLGGTD LRGRTWATAV ALAWLEHRCA ENSBTAP00000047929/1-1255 SGSEGPGQVD SGRGSDTEAS EGLEGPGGAD LRGRTWATAV ALAWLEHRCA ENSTTRP00000010662/1-1007 SGSEGPGQVD SGRGSDTEAS EGAEGPGGAD LRGRTWATAV ALAWLEHRCA bmy_10425T0/1-999 SGSEGLGQVD SGRGSDTEAS EGAEGPGGAD LRGRTWATAV ALAWLEHRCA BACU016574/1-1203 SGSEGLGQVD SGRGSDTEAS EGAEGPGGAD LRGRTWATAV ALAWLEHRCA 1201 1250 ENSP00000398688/1-1242 AAFDEWELTA AKADCWLRAQ HLPDGLDLAA LKAAARGLFL LLRHWDQNLQ ENSBTAP00000047929/1-1255 GAFGEWELAA AKADCWLRAQ HLPDGLDLAN LKAAARGLFL LLRHWDQNLQ ENSTTRP00000010662/1-1007 AAFGEWELAA AKADCWLQAQ HLPDGLDLAN LKAAARGLFL LLRHWDQNLQ bmy_10425T0/1-999 AAFGEWELAA AKADCWLRAQ HLPDGLDLAN LKAAARGLFL LLRHWDQNLQ BACU016574/1-1203 AAFGEWELAA AKADCWLRAQ HLPDGLDLAN LKAAARGLFL LLRHWDQNLQ 1251 1300 ENSP00000398688/1-1242 LHLLCYSPAN V ENSBTAP00000047929/1-1255 LHLLCYSPAN M ENSTTRP00000010662/1-1007 LHLLCYSPAN M bmy_10425T0/1-999 LHLLCYSPAN M BACU016574/1-1203 LHLLCYSPAN M